RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 LYPD5Q6UWN5 251 aa11.12□□□□□ -0.63
SDC4-201ENST00000372733 DEFB135Q30KP9 77 aa11.12□□□□□ -0.63
SDC4-201ENST00000372733 Q6ZQT0 140 aa11.11□□□□□ -0.63
SDC4-201ENST00000372733 DPH3Q96FX2 82 aa11.11□□□□□ -0.63
SDC4-201ENST00000372733 RPS28P62857 69 aaKnown RBP11.11□□□□□ -0.63
SDC4-201ENST00000372733 SMIM9A6NGZ8 99 aa11.1□□□□□ -0.63
SDC4-201ENST00000372733 LAMTOR3Q9UHA4 124 aa11.1□□□□□ -0.63
SDC4-201ENST00000372733 VWFP04275 2813 aa11.1□□□□□ -0.63
SDC4-201ENST00000372733 LYRM9A8MSI8 78 aa11.1□□□□□ -0.63
SDC4-201ENST00000372733 ZNF561-AS1K7EIQ3 104 aa11.1□□□□□ -0.63
SDC4-201ENST00000372733 OXTP01178 125 aa11.1□□□□□ -0.63
SDC4-201ENST00000372733 RBM3P98179 157 aaKnown RBP11.1□□□□□ -0.63
SDC4-201ENST00000372733 FASNP49327 2511 aaKnown RBP11.09□□□□□ -0.63
SDC4-201ENST00000372733 PDZD2O15018 2839 aa11.07□□□□□ -0.64
SDC4-201ENST00000372733 CYSRT1A8MQ03 144 aa11.07□□□□□ -0.64
SDC4-201ENST00000372733 Q6ZQY7 126 aa11.07□□□□□ -0.64
SDC4-201ENST00000372733 CELA1Q9UNI1 258 aa11.07□□□□□ -0.64
SDC4-201ENST00000372733 DAD1P61803 113 aa11.07□□□□□ -0.64
SDC4-201ENST00000372733 LOC110117498A0A087WWA1 95 aa11.06□□□□□ -0.64
SDC4-201ENST00000372733 TRBV10-3A0A0K0K1G6 114 aa11.06□□□□□ -0.64
SDC4-201ENST00000372733 IGLV6-57P01721 117 aa11.06□□□□□ -0.64
SDC4-201ENST00000372733 HTN3P15516 51 aa11.06□□□□□ -0.64
SDC4-201ENST00000372733 C20orf197Q8N268 126 aa11.05□□□□□ -0.64
SDC4-201ENST00000372733 UNC79Q9P2D8 2635 aa11.04□□□□□ -0.64
SDC4-201ENST00000372733 XAGE1AQ9HD64 81 aa11.04□□□□□ -0.64
SDC4-201ENST00000372733 KLK12Q9UKR0 248 aa11.04□□□□□ -0.64
SDC4-201ENST00000372733 A0A0J9YWU9 116 aa11.04□□□□□ -0.64
SDC4-201ENST00000372733 IGHV4-30-4P0DP06 118 aa11.04□□□□□ -0.64
SDC4-201ENST00000372733 HAMPP81172 84 aa11.04□□□□□ -0.64
SDC4-201ENST00000372733 LINC01547P58512 204 aaPredicted RBP11.03□□□□□ -0.64
SDC4-201ENST00000372733 Q6ZVQ6 151 aa11.03□□□□□ -0.64
SDC4-201ENST00000372733 HIVEP2P31629 2446 aa11.01□□□□□ -0.65
SDC4-201ENST00000372733 C6orf48Q9UBA6 75 aa11.01□□□□□ -0.65
SDC4-201ENST00000372733 LELP1Q5T871 98 aa11□□□□□ -0.65
SDC4-201ENST00000372733 SMR3AQ99954 134 aa11□□□□□ -0.65
SDC4-201ENST00000372733 KMT2BQ9UMN6 2715 aaPredicted RBP11□□□□□ -0.65
SDC4-201ENST00000372733 MUC7Q8TAX7 377 aa10.99□□□□□ -0.65
SDC4-201ENST00000372733 DIRC1Q969H9 104 aa10.99□□□□□ -0.65
SDC4-201ENST00000372733 Q8NAQ8 132 aa10.99□□□□□ -0.65
SDC4-201ENST00000372733 PRR34Q9NV39 138 aa10.99□□□□□ -0.65
SDC4-201ENST00000372733 C5orf47Q569G3 176 aa10.98□□□□□ -0.65
SDC4-201ENST00000372733 TRAV10A0A0B4J240 114 aa10.98□□□□□ -0.65
SDC4-201ENST00000372733 C9orf66Q5T8R8 295 aa10.97□□□□□ -0.65
SDC4-201ENST00000372733 SCXQ7RTU7 201 aa10.97□□□□□ -0.65
SDC4-201ENST00000372733 APOC4P55056 127 aa10.96□□□□□ -0.65
SDC4-201ENST00000372733 TRAV7A0A075B6U4 112 aa10.96□□□□□ -0.66
SDC4-201ENST00000372733 NDUFC2-KCTD14E9PQ53 114 aa10.96□□□□□ -0.66
SDC4-201ENST00000372733 ZNF73O43830 326 aaPredicted RBP10.96□□□□□ -0.66
SDC4-201ENST00000372733 GVQW2A0A096LPI5 108 aaPredicted RBP10.95□□□□□ -0.66
SDC4-201ENST00000372733 COX7BP24311 80 aa10.94□□□□□ -0.66
SDC4-201ENST00000372733 HIGD2BQ4VC39 106 aa10.94□□□□□ -0.66
SDC4-201ENST00000372733 FAM236DA0A1B0GTK5 79 aa10.93□□□□□ -0.66
SDC4-201ENST00000372733 FAM236CP0DP71 79 aa10.93□□□□□ -0.66
SDC4-201ENST00000372733 PDE6GP18545 87 aa10.93□□□□□ -0.66
SDC4-201ENST00000372733 TRBV7-4A0A0J9YYF1 115 aa10.93□□□□□ -0.66
SDC4-201ENST00000372733 SPART-AS1P0CW21 52 aa10.93□□□□□ -0.66
SDC4-201ENST00000372733 C4orf26Q17RF5 130 aa10.93□□□□□ -0.66
SDC4-201ENST00000372733 H7BZZ5 65 aa10.92□□□□□ -0.66
SDC4-201ENST00000372733 Q5XG85 94 aa10.92□□□□□ -0.66
SDC4-201ENST00000372733 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.92□□□□□ -0.66
SDC4-201ENST00000372733 MIFP14174 115 aa10.92□□□□□ -0.66
SDC4-201ENST00000372733 ELOF1P60002 83 aaKnown RBP10.92□□□□□ -0.66
SDC4-201ENST00000372733 J3QKU1 62 aa10.91□□□□□ -0.66
SDC4-201ENST00000372733 CXCL6P80162 114 aa10.91□□□□□ -0.66
SDC4-201ENST00000372733 SNURFQ9Y675 71 aa10.91□□□□□ -0.66
SDC4-201ENST00000372733 TENM1Q9UKZ4 2725 aa10.9□□□□□ -0.66
SDC4-201ENST00000372733 HIVEP1P15822 2718 aa10.9□□□□□ -0.66
SDC4-201ENST00000372733 H3BQ85 93 aa10.9□□□□□ -0.66
SDC4-201ENST00000372733 BCE1O60756 84 aa10.9□□□□□ -0.66
SDC4-201ENST00000372733 VPREB1P12018 145 aa10.9□□□□□ -0.66
SDC4-201ENST00000372733 RMI2Q96E14 147 aa10.89□□□□□ -0.67
SDC4-201ENST00000372733 CAMK2N2Q96S95 79 aa10.89□□□□□ -0.67
SDC4-201ENST00000372733 HRCT1Q6UXD1 115 aa10.88□□□□□ -0.67
SDC4-201ENST00000372733 WFDC10BQ8IUB3 73 aa10.88□□□□□ -0.67
SDC4-201ENST00000372733 KLKP1Q107X0 134 aa10.87□□□□□ -0.67
SDC4-201ENST00000372733 Q6ZRU5 148 aa10.86□□□□□ -0.67
SDC4-201ENST00000372733 TM2D3Q9BRN9 247 aa10.86□□□□□ -0.67
SDC4-201ENST00000372733 TRBV7-6A0A0J9YX20 115 aa10.86□□□□□ -0.67
SDC4-201ENST00000372733 OTOGQ6ZRI0 2925 aa10.85□□□□□ -0.67
SDC4-201ENST00000372733 M0R378 163 aa10.84□□□□□ -0.67
SDC4-201ENST00000372733 LINC00528Q8N1L1 170 aa10.84□□□□□ -0.67
SDC4-201ENST00000372733 F8WEM9 126 aa10.83□□□□□ -0.68
SDC4-201ENST00000372733 EGFEM1PQ0D2K5 195 aa10.83□□□□□ -0.68
SDC4-201ENST00000372733 Q8N9L7 120 aa10.83□□□□□ -0.68
SDC4-201ENST00000372733 KRTAP26-1Q6PEX3 210 aa10.83□□□□□ -0.68
SDC4-201ENST00000372733 C15orf56Q8N910 161 aa10.83□□□□□ -0.68
SDC4-201ENST00000372733 SERP1Q9Y6X1 66 aa10.82□□□□□ -0.68
SDC4-201ENST00000372733 TRRAPQ9Y4A5 3859 aa10.81□□□□□ -0.68
SDC4-201ENST00000372733 EPM2AB3EWF7 344 aa10.8□□□□□ -0.68
SDC4-201ENST00000372733 NREPQ16612 68 aa10.79□□□□□ -0.68
SDC4-201ENST00000372733 KPRPQ5T749 579 aaPredicted RBP10.79□□□□□ -0.68
SDC4-201ENST00000372733 Q6ZRP5 223 aa10.78□□□□□ -0.68
SDC4-201ENST00000372733 RETNQ9HD89 108 aa10.78□□□□□ -0.68
SDC4-201ENST00000372733 ATRQ13535 2644 aa10.78□□□□□ -0.68
SDC4-201ENST00000372733 FLNBO75369 2602 aaKnown RBP10.77□□□□□ -0.69
SDC4-201ENST00000372733 BPY2O14599 106 aa10.77□□□□□ -0.69
SDC4-201ENST00000372733 INAFM1C9JVW0 142 aa10.76□□□□□ -0.69
SDC4-201ENST00000372733 C3orf84H3BNL1 204 aa10.76□□□□□ -0.69
SDC4-201ENST00000372733 PKD1L1Q8TDX9 2849 aa10.75□□□□□ -0.69
SDC4-201ENST00000372733 IGKV4-1P06312 121 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms