RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 RPL24P83731 157 aaKnown RBP7.82□□□□□ -1.16
VPS29-201ENST00000360579 ERASQ7Z444 233 aa7.82□□□□□ -1.16
VPS29-201ENST00000360579 TOMM6Q96B49 74 aa7.82□□□□□ -1.16
VPS29-201ENST00000360579 A0A1B0GVG6 124 aa7.81□□□□□ -1.16
VPS29-201ENST00000360579 KRTAP9-7A8MTY7 169 aa7.81□□□□□ -1.16
VPS29-201ENST00000360579 VPREB1P12018 145 aa7.81□□□□□ -1.16
VPS29-201ENST00000360579 HIGD2AQ9BW72 106 aa7.81□□□□□ -1.16
VPS29-201ENST00000360579 KRTAP4-1Q9BYQ7 146 aa7.81□□□□□ -1.16
VPS29-201ENST00000360579 ZNF706Q9Y5V0 76 aaPredicted RBP7.81□□□□□ -1.16
VPS29-201ENST00000360579 SPRR4Q96PI1 79 aa7.8□□□□□ -1.16
VPS29-201ENST00000360579 SCGB3A1Q96QR1 104 aa7.8□□□□□ -1.16
VPS29-201ENST00000360579 NDUFA12Q9UI09 145 aa7.8□□□□□ -1.16
VPS29-201ENST00000360579 LINC01549A6NIU2 74 aa7.79□□□□□ -1.16
VPS29-201ENST00000360579 SPINK1P00995 79 aa7.79□□□□□ -1.16
VPS29-201ENST00000360579 SPINK8P0C7L1 97 aa7.79□□□□□ -1.16
VPS29-201ENST00000360579 PFN2P35080 140 aa7.79□□□□□ -1.16
VPS29-201ENST00000360579 H3BRM9 83 aa7.78□□□□□ -1.16
VPS29-201ENST00000360579 LINC00310P59036 64 aa7.78□□□□□ -1.16
VPS29-201ENST00000360579 DAND5Q8N907 189 aa7.78□□□□□ -1.16
VPS29-201ENST00000360579 Q8NBF4 154 aa7.78□□□□□ -1.16
VPS29-201ENST00000360579 SND1-IT1Q9HBX3 110 aa7.78□□□□□ -1.16
VPS29-201ENST00000360579 COX17Q14061 63 aa7.77□□□□□ -1.17
VPS29-201ENST00000360579 KRTAP4-11Q9BYQ6 195 aa7.77□□□□□ -1.17
VPS29-201ENST00000360579 FAM19A2Q8N3H0 131 aa7.76□□□□□ -1.17
VPS29-201ENST00000360579 CST9LQ9H4G1 147 aa7.76□□□□□ -1.17
VPS29-201ENST00000360579 RAB14P61106 215 aa7.75□□□□□ -1.17
VPS29-201ENST00000360579 ERG28Q9UKR5 140 aa7.75□□□□□ -1.17
VPS29-201ENST00000360579 ADCYAP1P18509 176 aa7.74□□□□□ -1.17
VPS29-201ENST00000360579 PMVKQ15126 192 aa7.74□□□□□ -1.17
VPS29-201ENST00000360579 ANAPC16Q96DE5 110 aa7.74□□□□□ -1.17
VPS29-201ENST00000360579 MT-ND4LP03901 98 aa7.73□□□□□ -1.17
VPS29-201ENST00000360579 CFC1BP0CG36 223 aa7.73□□□□□ -1.17
VPS29-201ENST00000360579 RPS29P62273 56 aaKnown RBP7.73□□□□□ -1.17
VPS29-201ENST00000360579 IGLV5-39A0A0G2JS06 123 aa7.72□□□□□ -1.17
VPS29-201ENST00000360579 SFTA2Q6UW10 78 aa7.72□□□□□ -1.17
VPS29-201ENST00000360579 Q8NDZ9 215 aa7.7□□□□□ -1.18
VPS29-201ENST00000360579 SLC25A20O43772 301 aa7.69□□□□□ -1.18
VPS29-201ENST00000360579 IGLC3P0DOY3 106 aa7.69□□□□□ -1.18
VPS29-201ENST00000360579 hCG_2014768A0A024R1R8 64 aa7.68□□□□□ -1.18
VPS29-201ENST00000360579 LINC01546A6NGU7 62 aa7.68□□□□□ -1.18
VPS29-201ENST00000360579 PRYO14603 147 aa7.68□□□□□ -1.18
VPS29-201ENST00000360579 LINC00483Q53H64 154 aa7.68□□□□□ -1.18
VPS29-201ENST00000360579 Q8N377 158 aa7.68□□□□□ -1.18
VPS29-201ENST00000360579 ZNF625Q96I27 306 aaPredicted RBP7.68□□□□□ -1.18
VPS29-201ENST00000360579 KIAA1644Q3SXP7 199 aa7.67□□□□□ -1.18
VPS29-201ENST00000360579 SSBP3-AS1Q7Z2R9 100 aa7.67□□□□□ -1.18
VPS29-201ENST00000360579 SMCR5Q8TEV8 140 aa7.67□□□□□ -1.18
VPS29-201ENST00000360579 ZNF22P17026 224 aaPredicted RBP7.66□□□□□ -1.18
VPS29-201ENST00000360579 MT1HP80294 61 aa7.66□□□□□ -1.18
VPS29-201ENST00000360579 ETDCA0A1B0GVM5 59 aa7.65□□□□□ -1.18
VPS29-201ENST00000360579 SPRR1AP35321 89 aa7.65□□□□□ -1.18
VPS29-201ENST00000360579 LINC00158P58513 81 aa7.64□□□□□ -1.19
VPS29-201ENST00000360579 MOBPQ13875 183 aa7.64□□□□□ -1.19
VPS29-201ENST00000360579 KRTAP19-2Q3LHN2 52 aa7.64□□□□□ -1.19
VPS29-201ENST00000360579 GAGE2AQ6NT46 116 aa7.64□□□□□ -1.19
VPS29-201ENST00000360579 KCNQ1DNQ9H478 68 aa7.64□□□□□ -1.19
VPS29-201ENST00000360579 SMCO4Q9NRQ5 59 aa7.64□□□□□ -1.19
VPS29-201ENST00000360579 IGLV9-49A0A0B4J1Y8 123 aa7.63□□□□□ -1.19
VPS29-201ENST00000360579 NDUFA6P56556 154 aa7.63□□□□□ -1.19
VPS29-201ENST00000360579 FA2HQ7L5A8 372 aa7.63□□□□□ -1.19
VPS29-201ENST00000360579 S100A12P80511 92 aa7.62□□□□□ -1.19
VPS29-201ENST00000360579 KRTAP4-16G5E9R7 235 aaPredicted RBP7.61□□□□□ -1.19
VPS29-201ENST00000360579 TRAV9-1A0A075B6T8 112 aa7.6□□□□□ -1.19
VPS29-201ENST00000360579 ATP6V1G1O75348 118 aa7.6□□□□□ -1.19
VPS29-201ENST00000360579 ANKRD39Q53RE8 183 aa7.6□□□□□ -1.19
VPS29-201ENST00000360579 BOD1L2Q8IYS8 172 aa7.6□□□□□ -1.19
VPS29-201ENST00000360579 IGLV8-61A0A075B6I0 122 aa7.59□□□□□ -1.19
VPS29-201ENST00000360579 TMEM170BQ5T4T1 132 aa7.59□□□□□ -1.19
VPS29-201ENST00000360579 A0A0U1RRA0 63 aa7.58□□□□□ -1.2
VPS29-201ENST00000360579 NCR3O14931 201 aa7.58□□□□□ -1.2
VPS29-201ENST00000360579 KRTAP10-6P60371 365 aaPredicted RBP7.58□□□□□ -1.2
VPS29-201ENST00000360579 C11orf86A6NJI1 115 aa7.57□□□□□ -1.2
VPS29-201ENST00000360579 PCOTHQ58A44 107 aa7.57□□□□□ -1.2
VPS29-201ENST00000360579 TRBV10-3A0A0K0K1G6 114 aa7.56□□□□□ -1.2
VPS29-201ENST00000360579 B5MCH6 92 aa7.56□□□□□ -1.2
VPS29-201ENST00000360579 SMIM13P0DJ93 91 aa7.55□□□□□ -1.2
VPS29-201ENST00000360579 COX19Q49B96 90 aa7.55□□□□□ -1.2
VPS29-201ENST00000360579 LCE5AQ5TCM9 118 aa7.55□□□□□ -1.2
VPS29-201ENST00000360579 BAGE3Q86Y29 109 aa7.55□□□□□ -1.2
VPS29-201ENST00000360579 A0A096LNJ9 63 aa7.54□□□□□ -1.2
VPS29-201ENST00000360579 LINC00587B1AMM8 73 aa7.54□□□□□ -1.2
VPS29-201ENST00000360579 M0R2T5 61 aa7.54□□□□□ -1.2
VPS29-201ENST00000360579 ERC2-IT1O76042 136 aa7.54□□□□□ -1.2
VPS29-201ENST00000360579 HBDP02042 147 aa7.54□□□□□ -1.2
VPS29-201ENST00000360579 S100PP25815 95 aa7.54□□□□□ -1.2
VPS29-201ENST00000360579 MEIG1Q5JSS6 88 aa7.54□□□□□ -1.2
VPS29-201ENST00000360579 C9orf153Q5TBE3 101 aa7.54□□□□□ -1.2
VPS29-201ENST00000360579 MIR7-3HGQ8N6C7 128 aa7.54□□□□□ -1.2
VPS29-201ENST00000360579 KRTAP9-3Q9BYQ3 159 aa7.54□□□□□ -1.2
VPS29-201ENST00000360579 HERV-K104P63124 156 aa7.52□□□□□ -1.21
VPS29-201ENST00000360579 FABP9Q0Z7S8 132 aa7.52□□□□□ -1.21
VPS29-201ENST00000360579 Q6ZRX8 168 aa7.52□□□□□ -1.21
VPS29-201ENST00000360579 LIMD2Q9BT23 127 aa7.52□□□□□ -1.21
VPS29-201ENST00000360579 Q9BRP9 147 aa7.51□□□□□ -1.21
VPS29-201ENST00000360579 MAP1LC3CQ9BXW4 147 aa7.51□□□□□ -1.21
VPS29-201ENST00000360579 TMEM223A0PJW6 202 aa7.5□□□□□ -1.21
VPS29-201ENST00000360579 LINC00614P0C842 121 aa7.5□□□□□ -1.21
VPS29-201ENST00000360579 DDTP30046 118 aa7.5□□□□□ -1.21
VPS29-201ENST00000360579 JOSD1Q15040 202 aaPredicted RBP7.5□□□□□ -1.21
VPS29-201ENST00000360579 CHTOPQ9Y3Y2 248 aaKnown RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms