RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 F8WDY8 70 aa10.84□□□□□ -0.67
PTPRF-201ENST00000359947 Q8N3U1 123 aa10.84□□□□□ -0.67
PTPRF-201ENST00000359947 UTRNP46939 3433 aa10.83□□□□□ -0.68
PTPRF-201ENST00000359947 RTL8CO15255 209 aa10.83□□□□□ -0.68
PTPRF-201ENST00000359947 PHF5AQ7RTV0 110 aaKnown RBP10.83□□□□□ -0.68
PTPRF-201ENST00000359947 C11orf72Q8NBR9 251 aa10.83□□□□□ -0.68
PTPRF-201ENST00000359947 J3QL48 77 aa10.82□□□□□ -0.68
PTPRF-201ENST00000359947 KIAA0087Q14695 138 aa10.8□□□□□ -0.68
PTPRF-201ENST00000359947 LINC00167Q96N53 147 aa10.8□□□□□ -0.68
PTPRF-201ENST00000359947 C7orf65Q6ZTY9 151 aa10.78□□□□□ -0.68
PTPRF-201ENST00000359947 LINC00310P59036 64 aa10.78□□□□□ -0.68
PTPRF-201ENST00000359947 NBDYA0A0U1RRE5 68 aa10.77□□□□□ -0.69
PTPRF-201ENST00000359947 TYMSOSQ8TAI1 123 aa10.77□□□□□ -0.69
PTPRF-201ENST00000359947 Q9UF83 564 aa10.77□□□□□ -0.69
PTPRF-201ENST00000359947 COL4A2P08572 1712 aa10.77□□□□□ -0.69
PTPRF-201ENST00000359947 WWC2-AS2Q96NR7 200 aa10.76□□□□□ -0.69
PTPRF-201ENST00000359947 C6orf48Q9UBA6 75 aa10.76□□□□□ -0.69
PTPRF-201ENST00000359947 TRBV7-7A0A0K0K1E9 115 aa10.75□□□□□ -0.69
PTPRF-201ENST00000359947 CRYGAP11844 174 aa10.75□□□□□ -0.69
PTPRF-201ENST00000359947 LINC00588Q9Y4M8 146 aa10.74□□□□□ -0.69
PTPRF-201ENST00000359947 COX8CQ7Z4L0 72 aa10.73□□□□□ -0.69
PTPRF-201ENST00000359947 A0A096LNJ9 63 aa10.72□□□□□ -0.69
PTPRF-201ENST00000359947 hDV103S1A0JD37 113 aa10.72□□□□□ -0.69
PTPRF-201ENST00000359947 LINC01561Q8N1V8 128 aa10.72□□□□□ -0.69
PTPRF-201ENST00000359947 KIF25-AS1Q9Y6Z4 181 aa10.7□□□□□ -0.7
PTPRF-201ENST00000359947 Q6ZRP5 223 aa10.69□□□□□ -0.7
PTPRF-201ENST00000359947 C1orf64Q8NEQ6 169 aa10.68□□□□□ -0.7
PTPRF-201ENST00000359947 IGHV3OR16-9A0A0B4J2B5 98 aa10.68□□□□□ -0.7
PTPRF-201ENST00000359947 LINC00846Q9NV44 126 aa10.67□□□□□ -0.7
PTPRF-201ENST00000359947 EPM2AB3EWF7 344 aa10.67□□□□□ -0.7
PTPRF-201ENST00000359947 Q8NAQ8 132 aa10.66□□□□□ -0.7
PTPRF-201ENST00000359947 PCSK5Q92824 1860 aa10.66□□□□□ -0.7
PTPRF-201ENST00000359947 PLA2G1BP04054 148 aaKnown RBP10.65□□□□□ -0.7
PTPRF-201ENST00000359947 RPL37AP61513 92 aaKnown RBP10.65□□□□□ -0.7
PTPRF-201ENST00000359947 SMIM29Q86T20 159 aa10.65□□□□□ -0.7
PTPRF-201ENST00000359947 Q96NJ1 140 aa10.63□□□□□ -0.71
PTPRF-201ENST00000359947 ST20-AS1Q8NBB2 130 aa10.62□□□□□ -0.71
PTPRF-201ENST00000359947 DNAH12Q6ZR08 3092 aa10.62□□□□□ -0.71
PTPRF-201ENST00000359947 LINC00313P59037 77 aa10.62□□□□□ -0.71
PTPRF-201ENST00000359947 SPATA3Q8NHX4 192 aa10.62□□□□□ -0.71
PTPRF-201ENST00000359947 FAM168BA1KXE4 195 aa10.62□□□□□ -0.71
PTPRF-201ENST00000359947 H3BNG1 76 aa10.61□□□□□ -0.71
PTPRF-201ENST00000359947 FAM19A4Q96LR4 140 aa10.61□□□□□ -0.71
PTPRF-201ENST00000359947 TMEM254Q8TBM7 123 aa10.61□□□□□ -0.71
PTPRF-201ENST00000359947 USP24Q9UPU5 2620 aa10.6□□□□□ -0.71
PTPRF-201ENST00000359947 KRTAP10-11P60412 298 aa10.6□□□□□ -0.71
PTPRF-201ENST00000359947 SMR3BP02814 79 aaPredicted RBP10.6□□□□□ -0.71
PTPRF-201ENST00000359947 IGLV5-39A0A0G2JS06 123 aa10.6□□□□□ -0.71
PTPRF-201ENST00000359947 DNAH10OSP0CZ25 163 aa10.59□□□□□ -0.71
PTPRF-201ENST00000359947 COX6B2Q6YFQ2 88 aa10.58□□□□□ -0.72
PTPRF-201ENST00000359947 LINC00476Q8WZB0 136 aa10.58□□□□□ -0.72
PTPRF-201ENST00000359947 ATP11AUNQ6ZP68 121 aa10.58□□□□□ -0.72
PTPRF-201ENST00000359947 K7EIL1 84 aa10.57□□□□□ -0.72
PTPRF-201ENST00000359947 Q8NBF4 154 aa10.56□□□□□ -0.72
PTPRF-201ENST00000359947 IGLV8-61A0A075B6I0 122 aa10.56□□□□□ -0.72
PTPRF-201ENST00000359947 EPG5Q9HCE0 2579 aa10.56□□□□□ -0.72
PTPRF-201ENST00000359947 Q6ZRX8 168 aa10.55□□□□□ -0.72
PTPRF-201ENST00000359947 SPAG11AQ6PDA7 123 aa10.54□□□□□ -0.72
PTPRF-201ENST00000359947 FLNBO75369 2602 aaKnown RBP10.54□□□□□ -0.72
PTPRF-201ENST00000359947 SERTAD4-AS1Q5TG53 156 aa10.54□□□□□ -0.72
PTPRF-201ENST00000359947 A0A1B0GU69 56 aa10.54□□□□□ -0.72
PTPRF-201ENST00000359947 ELOF1P60002 83 aaKnown RBP10.53□□□□□ -0.72
PTPRF-201ENST00000359947 BPTFQ12830 3046 aa10.53□□□□□ -0.72
PTPRF-201ENST00000359947 BCE1O60756 84 aa10.53□□□□□ -0.72
PTPRF-201ENST00000359947 CXCL6P80162 114 aa10.52□□□□□ -0.73
PTPRF-201ENST00000359947 PRRC2CQ9Y520 2896 aaKnown RBP10.51□□□□□ -0.73
PTPRF-201ENST00000359947 FAM218AQ96MZ4 157 aa10.51□□□□□ -0.73
PTPRF-201ENST00000359947 C9orf92A6NGG3 77 aa10.49□□□□□ -0.73
PTPRF-201ENST00000359947 GVQW2A0A096LPI5 108 aaPredicted RBP10.49□□□□□ -0.73
PTPRF-201ENST00000359947 ACYP2P14621 99 aa10.49□□□□□ -0.73
PTPRF-201ENST00000359947 TP53AIP1Q9HCN2 124 aa10.47□□□□□ -0.73
PTPRF-201ENST00000359947 CDIP1Q9H305 208 aa10.47□□□□□ -0.73
PTPRF-201ENST00000359947 HECTD1Q9ULT8 2610 aa10.46□□□□□ -0.73
PTPRF-201ENST00000359947 KRTAP10-3P60369 221 aa10.45□□□□□ -0.74
PTPRF-201ENST00000359947 C4orf26Q17RF5 130 aa10.43□□□□□ -0.74
PTPRF-201ENST00000359947 MGAM2Q2M2H8 2515 aa10.43□□□□□ -0.74
PTPRF-201ENST00000359947 LINC01546A6NGU7 62 aa10.43□□□□□ -0.74
PTPRF-201ENST00000359947 IGLV5-45A0A087WSX0 123 aa10.42□□□□□ -0.74
PTPRF-201ENST00000359947 PRO0628Q9UI54 55 aa10.41□□□□□ -0.74
PTPRF-201ENST00000359947 SPINT4Q6UDR6 99 aa10.41□□□□□ -0.74
PTPRF-201ENST00000359947 CEP350Q5VT06 3117 aa10.41□□□□□ -0.74
PTPRF-201ENST00000359947 ANAPC11Q9NYG5 84 aa10.39□□□□□ -0.75
PTPRF-201ENST00000359947 Q6ZQT0 140 aa10.39□□□□□ -0.75
PTPRF-201ENST00000359947 LINC00304Q8N9R0 145 aa10.38□□□□□ -0.75
PTPRF-201ENST00000359947 CSNK1G2-AS1Q8NCQ2 148 aa10.38□□□□□ -0.75
PTPRF-201ENST00000359947 TM2D3Q9BRN9 247 aa10.37□□□□□ -0.75
PTPRF-201ENST00000359947 C5orf42Q9H799 3197 aa10.37□□□□□ -0.75
PTPRF-201ENST00000359947 DSCR10P59022 87 aa10.37□□□□□ -0.75
PTPRF-201ENST00000359947 OBSCN-AS1Q96MR7 158 aa10.37□□□□□ -0.75
PTPRF-201ENST00000359947 TRAV22A0A0B4J277 110 aa10.35□□□□□ -0.75
PTPRF-201ENST00000359947 VPREB1P12018 145 aa10.35□□□□□ -0.75
PTPRF-201ENST00000359947 A0A087WTM6 91 aa10.34□□□□□ -0.75
PTPRF-201ENST00000359947 C19orf73Q9NVV2 129 aa10.33□□□□□ -0.76
PTPRF-201ENST00000359947 A0A0G2JQZ4 141 aa10.32□□□□□ -0.76
PTPRF-201ENST00000359947 A0A1W2PNN7 141 aa10.32□□□□□ -0.76
PTPRF-201ENST00000359947 IGLV1-50A0A075B6I6 118 aa10.32□□□□□ -0.76
PTPRF-201ENST00000359947 C8orf87E5RJ46 101 aa10.3□□□□□ -0.76
PTPRF-201ENST00000359947 TRBV7-4A0A0J9YYF1 115 aa10.3□□□□□ -0.76
PTPRF-201ENST00000359947 C15orf56Q8N910 161 aa10.29□□□□□ -0.76
PTPRF-201ENST00000359947 K7EQZ3 153 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms