RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 PMAIP1Q13794 54 aa12.44□□□□□ -0.42
COL18A1-202ENST00000355480 CRYGAP11844 174 aa12.44□□□□□ -0.42
COL18A1-202ENST00000355480 LINC00315P59091 139 aa12.44□□□□□ -0.42
COL18A1-202ENST00000355480 hDV103S1A0JD37 113 aa12.43□□□□□ -0.42
COL18A1-202ENST00000355480 H3BNG1 76 aa12.43□□□□□ -0.42
COL18A1-202ENST00000355480 CXCL6P80162 114 aa12.42□□□□□ -0.42
COL18A1-202ENST00000355480 SPATA3Q8NHX4 192 aa12.41□□□□□ -0.42
COL18A1-202ENST00000355480 C7orf65Q6ZTY9 151 aa12.4□□□□□ -0.42
COL18A1-202ENST00000355480 USP9YO00507 2555 aaPredicted RBP12.4□□□□□ -0.42
COL18A1-202ENST00000355480 FAM229AH3BQW9 127 aa12.39□□□□□ -0.43
COL18A1-202ENST00000355480 SMIM29Q86T20 159 aa12.39□□□□□ -0.43
COL18A1-202ENST00000355480 PHF5AQ7RTV0 110 aaKnown RBP12.39□□□□□ -0.43
COL18A1-202ENST00000355480 LINC01546A6NGU7 62 aa12.39□□□□□ -0.43
COL18A1-202ENST00000355480 RTL8CO15255 209 aa12.39□□□□□ -0.43
COL18A1-202ENST00000355480 NBDYA0A0U1RRE5 68 aa12.37□□□□□ -0.43
COL18A1-202ENST00000355480 PKD1L2Q7Z442 2459 aa12.36□□□□□ -0.43
COL18A1-202ENST00000355480 Q9UF83 564 aa12.36□□□□□ -0.43
COL18A1-202ENST00000355480 C16orf90A8MZG2 172 aa12.34□□□□□ -0.43
COL18A1-202ENST00000355480 CHTF8P0CG12 524 aa12.33□□□□□ -0.44
COL18A1-202ENST00000355480 IGLV5-45A0A087WSX0 123 aa12.33□□□□□ -0.44
COL18A1-202ENST00000355480 ELOF1P60002 83 aaKnown RBP12.33□□□□□ -0.44
COL18A1-202ENST00000355480 LINC00588Q9Y4M8 146 aa12.32□□□□□ -0.44
COL18A1-202ENST00000355480 Q6ZRP5 223 aa12.32□□□□□ -0.44
COL18A1-202ENST00000355480 Q8NAQ8 132 aa12.32□□□□□ -0.44
COL18A1-202ENST00000355480 TP53AIP1Q9HCN2 124 aa12.31□□□□□ -0.44
COL18A1-202ENST00000355480 TYMSOSQ8TAI1 123 aa12.31□□□□□ -0.44
COL18A1-202ENST00000355480 EPM2AB3EWF7 344 aa12.3□□□□□ -0.44
COL18A1-202ENST00000355480 Q6ZRX8 168 aa12.3□□□□□ -0.44
COL18A1-202ENST00000355480 Q8NBF4 154 aa12.29□□□□□ -0.44
COL18A1-202ENST00000355480 LINC00476Q8WZB0 136 aa12.29□□□□□ -0.44
COL18A1-202ENST00000355480 FAM218AQ96MZ4 157 aa12.27□□□□□ -0.44
COL18A1-202ENST00000355480 COL4A2P08572 1712 aa12.27□□□□□ -0.44
COL18A1-202ENST00000355480 SPTBN4Q9H254 2564 aa12.26□□□□□ -0.45
COL18A1-202ENST00000355480 MTORP42345 2549 aa12.26□□□□□ -0.45
COL18A1-202ENST00000355480 PTPRBP23467 1997 aa12.25□□□□□ -0.45
COL18A1-202ENST00000355480 A0A1B0GU69 56 aa12.25□□□□□ -0.45
COL18A1-202ENST00000355480 WWC2-AS2Q96NR7 200 aa12.25□□□□□ -0.45
COL18A1-202ENST00000355480 ST20-AS1Q8NBB2 130 aa12.24□□□□□ -0.45
COL18A1-202ENST00000355480 ACYP2P14621 99 aa12.24□□□□□ -0.45
COL18A1-202ENST00000355480 LINC00313P59037 77 aa12.24□□□□□ -0.45
COL18A1-202ENST00000355480 CDIP1Q9H305 208 aa12.24□□□□□ -0.45
COL18A1-202ENST00000355480 GVQW2A0A096LPI5 108 aaPredicted RBP12.22□□□□□ -0.45
COL18A1-202ENST00000355480 A0A1B0GW54 56 aa12.22□□□□□ -0.45
COL18A1-202ENST00000355480 FASNP49327 2511 aaKnown RBP12.2□□□□□ -0.46
COL18A1-202ENST00000355480 BCE1O60756 84 aa12.2□□□□□ -0.46
COL18A1-202ENST00000355480 Q6ZQT0 140 aa12.2□□□□□ -0.46
COL18A1-202ENST00000355480 COL27A1Q8IZC6 1860 aaPredicted RBP12.18□□□□□ -0.46
COL18A1-202ENST00000355480 DNAH10OSP0CZ25 163 aa12.16□□□□□ -0.46
COL18A1-202ENST00000355480 SMCPP49901 116 aaPredicted RBP12.16□□□□□ -0.46
COL18A1-202ENST00000355480 RPL37AP61513 92 aaKnown RBP12.16□□□□□ -0.46
COL18A1-202ENST00000355480 PLA2G1BP04054 148 aaKnown RBP12.16□□□□□ -0.46
COL18A1-202ENST00000355480 Q96NJ1 140 aa12.16□□□□□ -0.46
COL18A1-202ENST00000355480 LOC110117498A0A087WWA1 95 aa12.15□□□□□ -0.46
COL18A1-202ENST00000355480 J3QL48 77 aa12.14□□□□□ -0.47
COL18A1-202ENST00000355480 FAM168BA1KXE4 195 aa12.13□□□□□ -0.47
COL18A1-202ENST00000355480 ATP11AUNQ6ZP68 121 aa12.13□□□□□ -0.47
COL18A1-202ENST00000355480 TRAV22A0A0B4J277 110 aa12.13□□□□□ -0.47
COL18A1-202ENST00000355480 SPAG11AQ6PDA7 123 aa12.13□□□□□ -0.47
COL18A1-202ENST00000355480 POLQO75417 2590 aa12.12□□□□□ -0.47
COL18A1-202ENST00000355480 CENPFP49454 3210 aa12.1□□□□□ -0.47
COL18A1-202ENST00000355480 H3BPC8 53 aa12.1□□□□□ -0.47
COL18A1-202ENST00000355480 VPREB1P12018 145 aa12.09□□□□□ -0.47
COL18A1-202ENST00000355480 ANKRD17O75179 2603 aaKnown RBP12.09□□□□□ -0.47
COL18A1-202ENST00000355480 ACANP16112 2415 aa12.09□□□□□ -0.47
COL18A1-202ENST00000355480 GOLGB1Q14789 3259 aaKnown RBP12.08□□□□□ -0.47
COL18A1-202ENST00000355480 F8P00451 2351 aa12.08□□□□□ -0.48
COL18A1-202ENST00000355480 KLK9Q2XQG4 91 aa12.06□□□□□ -0.48
COL18A1-202ENST00000355480 SERTAD4-AS1Q5TG53 156 aa12.06□□□□□ -0.48
COL18A1-202ENST00000355480 PRO0461Q9UI25 63 aa12.06□□□□□ -0.48
COL18A1-202ENST00000355480 TRBV7-4A0A0J9YYF1 115 aa12.05□□□□□ -0.48
COL18A1-202ENST00000355480 IGLV6-57P01721 117 aa12.05□□□□□ -0.48
COL18A1-202ENST00000355480 K7EIL1 84 aa12.05□□□□□ -0.48
COL18A1-202ENST00000355480 KRTAP10-11P60412 298 aa12.04□□□□□ -0.48
COL18A1-202ENST00000355480 IGLV8-61A0A075B6I0 122 aa12.04□□□□□ -0.48
COL18A1-202ENST00000355480 CSNK1G2-AS1Q8NCQ2 148 aa12.03□□□□□ -0.48
COL18A1-202ENST00000355480 TM2D3Q9BRN9 247 aa12.03□□□□□ -0.48
COL18A1-202ENST00000355480 C8orf87E5RJ46 101 aa12.02□□□□□ -0.49
COL18A1-202ENST00000355480 IGLV1-50A0A075B6I6 118 aa12.02□□□□□ -0.49
COL18A1-202ENST00000355480 A8MWP4 228 aa12.01□□□□□ -0.49
COL18A1-202ENST00000355480 LITAFQ99732 161 aa12.01□□□□□ -0.49
COL18A1-202ENST00000355480 LOC101927531A0A1B0GV80 90 aa11.99□□□□□ -0.49
COL18A1-202ENST00000355480 MRPL34Q9BQ48 92 aaKnown RBP11.98□□□□□ -0.49
COL18A1-202ENST00000355480 COX6B2Q6YFQ2 88 aa11.97□□□□□ -0.49
COL18A1-202ENST00000355480 K7EQZ3 153 aa11.96□□□□□ -0.49
COL18A1-202ENST00000355480 KCNQ1DNQ9H478 68 aa11.96□□□□□ -0.49
COL18A1-202ENST00000355480 C19orf73Q9NVV2 129 aa11.95□□□□□ -0.5
COL18A1-202ENST00000355480 LINC00304Q8N9R0 145 aa11.92□□□□□ -0.5
COL18A1-202ENST00000355480 PRO0628Q9UI54 55 aa11.91□□□□□ -0.5
COL18A1-202ENST00000355480 C15orf56Q8N910 161 aa11.91□□□□□ -0.5
COL18A1-202ENST00000355480 DSCR10P59022 87 aa11.91□□□□□ -0.5
COL18A1-202ENST00000355480 LINC00528Q8N1L1 170 aa11.9□□□□□ -0.5
COL18A1-202ENST00000355480 IGFL1Q6UW32 110 aa11.9□□□□□ -0.5
COL18A1-202ENST00000355480 KRTAP10-3P60369 221 aa11.9□□□□□ -0.51
COL18A1-202ENST00000355480 PRR34Q9NV39 138 aa11.9□□□□□ -0.51
COL18A1-202ENST00000355480 ZNF861PO60384 105 aa11.89□□□□□ -0.51
COL18A1-202ENST00000355480 A0A087WTM6 91 aa11.88□□□□□ -0.51
COL18A1-202ENST00000355480 SMR3BP02814 79 aaPredicted RBP11.88□□□□□ -0.51
COL18A1-202ENST00000355480 PCSK5Q92824 1860 aa11.88□□□□□ -0.51
COL18A1-202ENST00000355480 A0A096LNT2 108 aa11.87□□□□□ -0.51
COL18A1-202ENST00000355480 C4orf26Q17RF5 130 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms