RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 LINC00158P58513 81 aa10.93□□□□□ -0.66
CLN3-202ENST00000355477 RPL24P83731 157 aaKnown RBP10.93□□□□□ -0.66
CLN3-202ENST00000355477 TMEM238C9JI98 176 aa10.91□□□□□ -0.66
CLN3-202ENST00000355477 RPL13AP40429 203 aaKnown RBP10.91□□□□□ -0.66
CLN3-202ENST00000355477 SMIM13P0DJ93 91 aa10.9□□□□□ -0.66
CLN3-202ENST00000355477 UBE2AP49459 152 aa10.9□□□□□ -0.66
CLN3-202ENST00000355477 A0A087X002 238 aa10.89□□□□□ -0.67
CLN3-202ENST00000355477 FABP4P15090 132 aa10.89□□□□□ -0.67
CLN3-202ENST00000355477 TMEM126AQ9H061 195 aa10.88□□□□□ -0.67
CLN3-202ENST00000355477 ANAPC11Q9NYG5 84 aa10.88□□□□□ -0.67
CLN3-202ENST00000355477 M0R378 163 aa10.87□□□□□ -0.67
CLN3-202ENST00000355477 TSPEAR-AS2P59090 65 aa10.87□□□□□ -0.67
CLN3-202ENST00000355477 PMCHL2Q9BQD1 86 aa10.87□□□□□ -0.67
CLN3-202ENST00000355477 NDUFA12Q9UI09 145 aa10.87□□□□□ -0.67
CLN3-202ENST00000355477 HSPB8Q9UJY1 196 aa10.87□□□□□ -0.67
CLN3-202ENST00000355477 LPAP08519 4548 aa10.87□□□□□ -0.67
CLN3-202ENST00000355477 HERV-K104P63124 156 aa10.86□□□□□ -0.67
CLN3-202ENST00000355477 PRLHP81277 87 aa10.86□□□□□ -0.67
CLN3-202ENST00000355477 MEIG1Q5JSS6 88 aa10.86□□□□□ -0.67
CLN3-202ENST00000355477 ATP6V1G1O75348 118 aa10.85□□□□□ -0.67
CLN3-202ENST00000355477 FAM19A1Q7Z5A9 133 aa10.85□□□□□ -0.67
CLN3-202ENST00000355477 MIR7-3HGQ8N6C7 128 aa10.85□□□□□ -0.67
CLN3-202ENST00000355477 LEPROTO15243 131 aa10.84□□□□□ -0.67
CLN3-202ENST00000355477 CRYGAP11844 174 aa10.84□□□□□ -0.67
CLN3-202ENST00000355477 PLNP26678 52 aa10.84□□□□□ -0.67
CLN3-202ENST00000355477 MYMXA0A1B0GTQ4 84 aa10.83□□□□□ -0.68
CLN3-202ENST00000355477 DPM2O94777 84 aa10.83□□□□□ -0.68
CLN3-202ENST00000355477 BOD1L2Q8IYS8 172 aa10.83□□□□□ -0.68
CLN3-202ENST00000355477 KRTAP13-2Q52LG2 175 aa10.82□□□□□ -0.68
CLN3-202ENST00000355477 TYMSOSQ8TAI1 123 aa10.81□□□□□ -0.68
CLN3-202ENST00000355477 PLEKHB2Q96CS7 222 aa10.81□□□□□ -0.68
CLN3-202ENST00000355477 LINC00587B1AMM8 73 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 HIST1H2BKO60814 126 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 IGKCP01834 107 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 HIST1H2BJP06899 126 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 HIST1H2BOP23527 126 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 HIST1H2BBP33778 126 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 HIST1H2BDP58876 126 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 HIST1H2BCP62807 126 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 HIST2H2BEQ16778 126 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.8□□□□□ -0.68
CLN3-202ENST00000355477 HIST1H2BHQ93079 126 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 HIST1H2BNQ99877 126 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 HIST1H2BMQ99879 126 aa10.8□□□□□ -0.68
CLN3-202ENST00000355477 J3QQQ9 107 aa10.79□□□□□ -0.68
CLN3-202ENST00000355477 NCR3O14931 201 aa10.79□□□□□ -0.68
CLN3-202ENST00000355477 TSPAN13O95857 204 aa10.79□□□□□ -0.68
CLN3-202ENST00000355477 DAND5Q8N907 189 aa10.79□□□□□ -0.68
CLN3-202ENST00000355477 MAP1LC3CQ9BXW4 147 aa10.79□□□□□ -0.68
CLN3-202ENST00000355477 FAM229BQ4G0N7 80 aa10.78□□□□□ -0.68
CLN3-202ENST00000355477 RNF213Q63HN8 5207 aa10.77□□□□□ -0.68
CLN3-202ENST00000355477 HERVK_113P61574 105 aa10.77□□□□□ -0.69
CLN3-202ENST00000355477 IGKV2D-26A0A0A0MRZ7 120 aa10.75□□□□□ -0.69
CLN3-202ENST00000355477 LOC107984156A0A0G2JMH3 177 aa10.75□□□□□ -0.69
CLN3-202ENST00000355477 ARL17AQ8IVW1 177 aa10.75□□□□□ -0.69
CLN3-202ENST00000355477 HIGD2AQ9BW72 106 aa10.75□□□□□ -0.69
CLN3-202ENST00000355477 KCNQ1DNQ9H478 68 aa10.75□□□□□ -0.69
CLN3-202ENST00000355477 SYS1-DBNDD2H3BUS1 97 aa10.74□□□□□ -0.69
CLN3-202ENST00000355477 PRYO14603 147 aa10.74□□□□□ -0.69
CLN3-202ENST00000355477 LGALS3P17931 250 aaKnown RBP10.74□□□□□ -0.69
CLN3-202ENST00000355477 NMUP48645 174 aa10.74□□□□□ -0.69
CLN3-202ENST00000355477 PRR4Q16378 134 aa10.74□□□□□ -0.69
CLN3-202ENST00000355477 TRBV10-3A0A0K0K1G6 114 aa10.73□□□□□ -0.69
CLN3-202ENST00000355477 SPRR1AP35321 89 aa10.73□□□□□ -0.69
CLN3-202ENST00000355477 KRTAP4-16G5E9R7 235 aaPredicted RBP10.72□□□□□ -0.69
CLN3-202ENST00000355477 E9PLD3 99 aa10.71□□□□□ -0.69
CLN3-202ENST00000355477 LINC00337Q8N6G1 96 aa10.71□□□□□ -0.69
CLN3-202ENST00000355477 ADAMTSL4-AS1Q5T5F5 129 aa10.7□□□□□ -0.7
CLN3-202ENST00000355477 A0A0J9YXY3 114 aa10.69□□□□□ -0.7
CLN3-202ENST00000355477 EIF4EBP3O60516 100 aaPredicted RBP10.69□□□□□ -0.7
CLN3-202ENST00000355477 LINC01545Q5VT33 79 aa10.69□□□□□ -0.7
CLN3-202ENST00000355477 C3orf22Q8N5N4 141 aa10.69□□□□□ -0.7
CLN3-202ENST00000355477 SPRR4Q96PI1 79 aa10.69□□□□□ -0.7
CLN3-202ENST00000355477 SOSTDC1Q6X4U4 206 aa10.68□□□□□ -0.7
CLN3-202ENST00000355477 LINC00304Q8N9R0 145 aa10.68□□□□□ -0.7
CLN3-202ENST00000355477 TRBV10-2A0A0K0K1G8 114 aa10.67□□□□□ -0.7
CLN3-202ENST00000355477 SMCR5Q8TEV8 140 aa10.67□□□□□ -0.7
CLN3-202ENST00000355477 ETDCA0A1B0GVM5 59 aa10.66□□□□□ -0.7
CLN3-202ENST00000355477 DDTP30046 118 aa10.66□□□□□ -0.7
CLN3-202ENST00000355477 NPC2P61916 151 aa10.66□□□□□ -0.7
CLN3-202ENST00000355477 PET117Q6UWS5 81 aa10.66□□□□□ -0.7
CLN3-202ENST00000355477 MIEN1Q9BRT3 115 aa10.66□□□□□ -0.7
CLN3-202ENST00000355477 SPANXB1Q9NS25 103 aaPredicted RBP10.65□□□□□ -0.7
CLN3-202ENST00000355477 B5MCH6 92 aa10.64□□□□□ -0.71
CLN3-202ENST00000355477 NDUFC2O95298 119 aa10.64□□□□□ -0.71
CLN3-202ENST00000355477 C3orf79P0CE67 100 aa10.64□□□□□ -0.71
CLN3-202ENST00000355477 COA6Q5JTJ3 125 aaKnown RBP10.64□□□□□ -0.71
CLN3-202ENST00000355477 IGLV6-57P01721 117 aa10.63□□□□□ -0.71
CLN3-202ENST00000355477 ZNF706Q9Y5V0 76 aaPredicted RBP10.63□□□□□ -0.71
CLN3-202ENST00000355477 S100A12P80511 92 aa10.62□□□□□ -0.71
CLN3-202ENST00000355477 LITAFQ99732 161 aa10.62□□□□□ -0.71
CLN3-202ENST00000355477 RETNLBQ9BQ08 111 aa10.62□□□□□ -0.71
CLN3-202ENST00000355477 PPDPFQ9H3Y8 114 aa10.62□□□□□ -0.71
CLN3-202ENST00000355477 ERC2-IT1O76042 136 aa10.61□□□□□ -0.71
CLN3-202ENST00000355477 KRTDAPP60985 99 aa10.6□□□□□ -0.71
CLN3-202ENST00000355477 S100A7L2Q5SY68 101 aa10.6□□□□□ -0.71
CLN3-202ENST00000355477 Q9BRP9 147 aa10.6□□□□□ -0.71
CLN3-202ENST00000355477 TTTY13Q9BZ97 58 aa10.6□□□□□ -0.71
CLN3-202ENST00000355477 LINC00308Q8TCZ7 52 aa10.58□□□□□ -0.72
CLN3-202ENST00000355477 ZNF815PA8K554 130 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms