RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 NCR3O14931 201 aa8.79□□□□□ -1
HMGB1-202ENST00000339872 CARD19Q96LW7 228 aa8.79□□□□□ -1
HMGB1-202ENST00000339872 NDUFC2-KCTD14E9PQ53 114 aa8.79□□□□□ -1
HMGB1-202ENST00000339872 WFDC2Q14508 124 aa8.79□□□□□ -1
HMGB1-202ENST00000339872 SMIM11BQ8TCY0 68 aa8.79□□□□□ -1
HMGB1-202ENST00000339872 RPL28P46779 137 aaKnown RBP8.78□□□□□ -1
HMGB1-202ENST00000339872 PSCAO43653 123 aa8.77□□□□□ -1
HMGB1-202ENST00000339872 STARD9Q9P2P6 4700 aa8.77□□□□□ -1.01
HMGB1-202ENST00000339872 GAGE2EQ4V326 116 aa8.77□□□□□ -1.01
HMGB1-202ENST00000339872 TTC32Q5I0X7 151 aa8.77□□□□□ -1.01
HMGB1-202ENST00000339872 GAGE2DQ9UEU5 116 aa8.77□□□□□ -1.01
HMGB1-202ENST00000339872 PLECQ15149 4684 aaKnown RBP8.77□□□□□ -1.01
HMGB1-202ENST00000339872 NBDYA0A0U1RRE5 68 aa8.76□□□□□ -1.01
HMGB1-202ENST00000339872 C9JAW5 83 aa8.76□□□□□ -1.01
HMGB1-202ENST00000339872 SLPIP03973 132 aa8.76□□□□□ -1.01
HMGB1-202ENST00000339872 LST1O00453 97 aa8.76□□□□□ -1.01
HMGB1-202ENST00000339872 LINC01620Q4KN68 170 aa8.76□□□□□ -1.01
HMGB1-202ENST00000339872 Q6ZRP5 223 aa8.76□□□□□ -1.01
HMGB1-202ENST00000339872 TENM2Q9NT68 2774 aa8.76□□□□□ -1.01
HMGB1-202ENST00000339872 SMCPP49901 116 aaPredicted RBP8.75□□□□□ -1.01
HMGB1-202ENST00000339872 FBN3Q75N90 2809 aa8.75□□□□□ -1.01
HMGB1-202ENST00000339872 TMEM126AQ9H061 195 aa8.75□□□□□ -1.01
HMGB1-202ENST00000339872 RPL18AQ02543 176 aaKnown RBP8.74□□□□□ -1.01
HMGB1-202ENST00000339872 S100A7L2Q5SY68 101 aa8.74□□□□□ -1.01
HMGB1-202ENST00000339872 SLC25A20O43772 301 aa8.73□□□□□ -1.01
HMGB1-202ENST00000339872 RNF151Q2KHN1 245 aa8.73□□□□□ -1.01
HMGB1-202ENST00000339872 ETDBQ3ZM63 59 aa8.73□□□□□ -1.01
HMGB1-202ENST00000339872 FAM218AQ96MZ4 157 aa8.72□□□□□ -1.01
HMGB1-202ENST00000339872 TRBV10-2A0A0K0K1G8 114 aa8.71□□□□□ -1.01
HMGB1-202ENST00000339872 OCIAD2Q56VL3 154 aa8.71□□□□□ -1.01
HMGB1-202ENST00000339872 M0R2N4 97 aa8.71□□□□□ -1.02
HMGB1-202ENST00000339872 TLX1NBP0CAT3 122 aa8.71□□□□□ -1.02
HMGB1-202ENST00000339872 VPREB1P12018 145 aa8.71□□□□□ -1.02
HMGB1-202ENST00000339872 C9orf129Q5T035 196 aaKnown RBP8.7□□□□□ -1.02
HMGB1-202ENST00000339872 H0YGX0 51 aa8.69□□□□□ -1.02
HMGB1-202ENST00000339872 IGLV6-57P01721 117 aa8.69□□□□□ -1.02
HMGB1-202ENST00000339872 DNAH10Q8IVF4 4471 aa8.69□□□□□ -1.02
HMGB1-202ENST00000339872 ANKRD29Q8N6D5 301 aa8.69□□□□□ -1.02
HMGB1-202ENST00000339872 TRBV10-3A0A0K0K1G6 114 aa8.68□□□□□ -1.02
HMGB1-202ENST00000339872 TRACP01848 142 aa8.68□□□□□ -1.02
HMGB1-202ENST00000339872 A0A087WYN8 130 aa8.68□□□□□ -1.02
HMGB1-202ENST00000339872 C14orf177Q52M58 125 aa8.68□□□□□ -1.02
HMGB1-202ENST00000339872 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.67□□□□□ -1.02
HMGB1-202ENST00000339872 GAGE2BQ13066 116 aa8.67□□□□□ -1.02
HMGB1-202ENST00000339872 C6orf99Q4VX62 202 aa8.67□□□□□ -1.02
HMGB1-202ENST00000339872 Q6ZRN7 208 aaPredicted RBP8.67□□□□□ -1.02
HMGB1-202ENST00000339872 WWC2-AS2Q96NR7 200 aa8.67□□□□□ -1.02
HMGB1-202ENST00000339872 LOC107984640A0A0U1RRK4 108 aa8.66□□□□□ -1.02
HMGB1-202ENST00000339872 K7ERU9 68 aa8.66□□□□□ -1.02
HMGB1-202ENST00000339872 TEN1Q86WV5 123 aa8.66□□□□□ -1.02
HMGB1-202ENST00000339872 H3BT86 120 aa8.66□□□□□ -1.02
HMGB1-202ENST00000339872 M0QXV9 152 aa8.66□□□□□ -1.02
HMGB1-202ENST00000339872 M0R378 163 aa8.66□□□□□ -1.02
HMGB1-202ENST00000339872 CNBPP62633 177 aaKnown RBP8.66□□□□□ -1.02
HMGB1-202ENST00000339872 SERTAD4-AS1Q5TG53 156 aa8.65□□□□□ -1.02
HMGB1-202ENST00000339872 VPS13DQ5THJ4 4388 aa8.65□□□□□ -1.02
HMGB1-202ENST00000339872 TRAV23DV6A0A075B6W5 121 aa8.65□□□□□ -1.03
HMGB1-202ENST00000339872 LRCOL1A6NCL2 159 aa8.65□□□□□ -1.03
HMGB1-202ENST00000339872 DNAL4O96015 105 aa8.65□□□□□ -1.03
HMGB1-202ENST00000339872 NKAPP1Q8N9T2 125 aa8.65□□□□□ -1.03
HMGB1-202ENST00000339872 FAM168BA1KXE4 195 aa8.63□□□□□ -1.03
HMGB1-202ENST00000339872 LINC01600Q96MT4 127 aa8.63□□□□□ -1.03
HMGB1-202ENST00000339872 TGP01266 2768 aa8.63□□□□□ -1.03
HMGB1-202ENST00000339872 LY6G6CO95867 125 aa8.63□□□□□ -1.03
HMGB1-202ENST00000339872 Q6ZR54 194 aa8.62□□□□□ -1.03
HMGB1-202ENST00000339872 PLA2G2DQ9UNK4 145 aa8.62□□□□□ -1.03
HMGB1-202ENST00000339872 DIRC1Q969H9 104 aa8.62□□□□□ -1.03
HMGB1-202ENST00000339872 ZNF73O43830 326 aaPredicted RBP8.61□□□□□ -1.03
HMGB1-202ENST00000339872 PPDPFLQ8WWR9 84 aa8.61□□□□□ -1.03
HMGB1-202ENST00000339872 BAALC-AS2P0C853 105 aa8.6□□□□□ -1.03
HMGB1-202ENST00000339872 C7orf33Q8WU49 177 aa8.6□□□□□ -1.03
HMGB1-202ENST00000339872 A0A096LNI7 61 aa8.6□□□□□ -1.03
HMGB1-202ENST00000339872 FAM19A5Q7Z5A7 132 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-202ENST00000339872 IGKV2-24A0A0C4DH68 120 aa8.59□□□□□ -1.03
HMGB1-202ENST00000339872 J3QR89 54 aa8.59□□□□□ -1.03
HMGB1-202ENST00000339872 IGLV5-37A0A075B6J1 123 aa8.59□□□□□ -1.03
HMGB1-202ENST00000339872 TEX49A0A1B0GTD5 131 aa8.59□□□□□ -1.03
HMGB1-202ENST00000339872 A0A1B0GX51 115 aa8.59□□□□□ -1.03
HMGB1-202ENST00000339872 C16orf90A8MZG2 172 aa8.59□□□□□ -1.03
HMGB1-202ENST00000339872 Q8N814 137 aa8.59□□□□□ -1.03
HMGB1-202ENST00000339872 CBY1Q9Y3M2 126 aa8.59□□□□□ -1.03
HMGB1-202ENST00000339872 LINC00575Q6W349 94 aa8.58□□□□□ -1.04
HMGB1-202ENST00000339872 KRTAP7-1Q8IUC3 87 aa8.58□□□□□ -1.04
HMGB1-202ENST00000339872 LINC00476Q8WZB0 136 aa8.58□□□□□ -1.04
HMGB1-202ENST00000339872 A0A087WTM6 91 aa8.57□□□□□ -1.04
HMGB1-202ENST00000339872 SNCGO76070 127 aa8.57□□□□□ -1.04
HMGB1-202ENST00000339872 COX7BP24311 80 aa8.57□□□□□ -1.04
HMGB1-202ENST00000339872 C9orf163Q8N9P6 203 aa8.57□□□□□ -1.04
HMGB1-202ENST00000339872 C22orf24Q9Y442 160 aa8.57□□□□□ -1.04
HMGB1-202ENST00000339872 RPL37AP8A6NKH3 93 aa8.56□□□□□ -1.04
HMGB1-202ENST00000339872 ORMDL1Q9P0S3 153 aa8.56□□□□□ -1.04
HMGB1-202ENST00000339872 KMT2AQ03164 3969 aa8.56□□□□□ -1.04
HMGB1-202ENST00000339872 hADV29S1A0JD25 119 aa8.55□□□□□ -1.04
HMGB1-202ENST00000339872 ELOF1P60002 83 aaKnown RBP8.55□□□□□ -1.04
HMGB1-202ENST00000339872 C1orf134Q5TEV5 83 aa8.55□□□□□ -1.04
HMGB1-202ENST00000339872 LINC00167Q96N53 147 aa8.55□□□□□ -1.04
HMGB1-202ENST00000339872 C3orf84H3BNL1 204 aa8.55□□□□□ -1.04
HMGB1-202ENST00000339872 MRPL55Q7Z7F7 128 aaKnown RBP8.55□□□□□ -1.04
HMGB1-202ENST00000339872 KCNQ1DNQ9H478 68 aa8.55□□□□□ -1.04
HMGB1-202ENST00000339872 TRBV7-6A0A0J9YX20 115 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms