RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 BCE1O60756 84 aa6.79□□□□□ -1.32
USP54-201ENST00000339859 LINC00643Q86TS7 51 aa6.78□□□□□ -1.32
USP54-201ENST00000339859 A0A087WYN8 130 aa6.78□□□□□ -1.32
USP54-201ENST00000339859 C2CD3Q4AC94 2353 aa6.78□□□□□ -1.32
USP54-201ENST00000339859 CRYGAP11844 174 aa6.78□□□□□ -1.32
USP54-201ENST00000339859 LINC00337Q8N6G1 96 aa6.78□□□□□ -1.32
USP54-201ENST00000339859 ZNF575Q86XF7 245 aa6.78□□□□□ -1.32
USP54-201ENST00000339859 ATOX1O00244 68 aa6.77□□□□□ -1.33
USP54-201ENST00000339859 CHTF8P0CG12 524 aa6.77□□□□□ -1.33
USP54-201ENST00000339859 B5MCH6 92 aa6.75□□□□□ -1.33
USP54-201ENST00000339859 TYMSOSQ8TAI1 123 aa6.75□□□□□ -1.33
USP54-201ENST00000339859 HELZ2Q9BYK8 2649 aaKnown RBP6.75□□□□□ -1.33
USP54-201ENST00000339859 J3KT08 172 aa6.75□□□□□ -1.33
USP54-201ENST00000339859 SCXQ7RTU7 201 aa6.75□□□□□ -1.33
USP54-201ENST00000339859 C15orf56Q8N910 161 aa6.75□□□□□ -1.33
USP54-201ENST00000339859 BPTFQ12830 3046 aa6.74□□□□□ -1.33
USP54-201ENST00000339859 EPM2AB3EWF7 344 aa6.74□□□□□ -1.33
USP54-201ENST00000339859 CASC2Q6XLA1 102 aa6.74□□□□□ -1.33
USP54-201ENST00000339859 Q8NBF4 154 aa6.74□□□□□ -1.33
USP54-201ENST00000339859 PCP4P48539 62 aa6.73□□□□□ -1.33
USP54-201ENST00000339859 ELOF1P60002 83 aaKnown RBP6.73□□□□□ -1.33
USP54-201ENST00000339859 MOBPQ13875 183 aa6.73□□□□□ -1.33
USP54-201ENST00000339859 Q6ZRX8 168 aa6.73□□□□□ -1.33
USP54-201ENST00000339859 MTORP42345 2549 aa6.73□□□□□ -1.33
USP54-201ENST00000339859 C9orf163Q8N9P6 203 aa6.72□□□□□ -1.33
USP54-201ENST00000339859 CNBPP62633 177 aaKnown RBP6.72□□□□□ -1.33
USP54-201ENST00000339859 TLX1NBP0CAT3 122 aa6.71□□□□□ -1.33
USP54-201ENST00000339859 IGHV6-1A0A0B4J1U7 121 aa6.7□□□□□ -1.34
USP54-201ENST00000339859 FAM236AA0A1B0GUQ0 79 aa6.7□□□□□ -1.34
USP54-201ENST00000339859 FAM236BA0A1B0GV22 79 aa6.7□□□□□ -1.34
USP54-201ENST00000339859 WFDC13Q8IUB5 93 aa6.7□□□□□ -1.34
USP54-201ENST00000339859 FAM168BA1KXE4 195 aa6.69□□□□□ -1.34
USP54-201ENST00000339859 KIAA0087Q14695 138 aa6.69□□□□□ -1.34
USP54-201ENST00000339859 VPREB1P12018 145 aa6.69□□□□□ -1.34
USP54-201ENST00000339859 PLA2G2DQ9UNK4 145 aa6.69□□□□□ -1.34
USP54-201ENST00000339859 A0A087WSZ3 146 aa6.69□□□□□ -1.34
USP54-201ENST00000339859 SDIM1Q6ZPB5 146 aa6.69□□□□□ -1.34
USP54-201ENST00000339859 IGLV1-50A0A075B6I6 118 aa6.68□□□□□ -1.34
USP54-201ENST00000339859 AKAP13Q12802 2813 aa6.68□□□□□ -1.34
USP54-201ENST00000339859 SPACA4Q8TDM5 124 aa6.68□□□□□ -1.34
USP54-201ENST00000339859 SEC61GP60059 68 aa6.67□□□□□ -1.34
USP54-201ENST00000339859 SERTAD4-AS1Q5TG53 156 aa6.67□□□□□ -1.34
USP54-201ENST00000339859 MUC4Q99102 2169 aa6.67□□□□□ -1.34
USP54-201ENST00000339859 LCE6AA0A183 80 aa6.66□□□□□ -1.34
USP54-201ENST00000339859 TNP2Q05952 138 aa6.66□□□□□ -1.34
USP54-201ENST00000339859 LINC00528Q8N1L1 170 aa6.65□□□□□ -1.34
USP54-201ENST00000339859 SMR3BP02814 79 aaPredicted RBP6.65□□□□□ -1.34
USP54-201ENST00000339859 SOSTDC1Q6X4U4 206 aa6.65□□□□□ -1.34
USP54-201ENST00000339859 FLNAP21333 2647 aaKnown RBP6.65□□□□□ -1.35
USP54-201ENST00000339859 IGLV6-57P01721 117 aa6.64□□□□□ -1.35
USP54-201ENST00000339859 CDH23Q9H251 3354 aa6.64□□□□□ -1.35
USP54-201ENST00000339859 ZNF861PO60384 105 aa6.64□□□□□ -1.35
USP54-201ENST00000339859 FAM236DA0A1B0GTK5 79 aa6.64□□□□□ -1.35
USP54-201ENST00000339859 FAM236CP0DP71 79 aa6.64□□□□□ -1.35
USP54-201ENST00000339859 ITPR3Q14573 2671 aa6.63□□□□□ -1.35
USP54-201ENST00000339859 KCNQ1DNQ9H478 68 aa6.63□□□□□ -1.35
USP54-201ENST00000339859 SPAG11AQ6PDA7 123 aa6.63□□□□□ -1.35
USP54-201ENST00000339859 FLNBO75369 2602 aaKnown RBP6.63□□□□□ -1.35
USP54-201ENST00000339859 C9orf129Q5T035 196 aaKnown RBP6.63□□□□□ -1.35
USP54-201ENST00000339859 A0A1B0GW54 56 aa6.62□□□□□ -1.35
USP54-201ENST00000339859 IGLV7-43P04211 117 aa6.62□□□□□ -1.35
USP54-201ENST00000339859 TMEM258P61165 79 aa6.6□□□□□ -1.35
USP54-201ENST00000339859 LINC00304Q8N9R0 145 aa6.6□□□□□ -1.35
USP54-201ENST00000339859 ST20-AS1Q8NBB2 130 aa6.6□□□□□ -1.35
USP54-201ENST00000339859 FAM240AA0A1B0GVK7 77 aa6.59□□□□□ -1.35
USP54-201ENST00000339859 PRR4Q16378 134 aa6.58□□□□□ -1.36
USP54-201ENST00000339859 LITAFQ99732 161 aa6.58□□□□□ -1.36
USP54-201ENST00000339859 CFAP46Q8IYW2 2715 aa6.58□□□□□ -1.36
USP54-201ENST00000339859 PRUNE2Q8WUY3 3088 aa6.58□□□□□ -1.36
USP54-201ENST00000339859 IMUPQ9GZP8 106 aa6.58□□□□□ -1.36
USP54-201ENST00000339859 Q6ZVQ6 151 aa6.58□□□□□ -1.36
USP54-201ENST00000339859 IGSF10Q6WRI0 2623 aa6.58□□□□□ -1.36
USP54-201ENST00000339859 SPTSSBQ8NFR3 76 aa6.57□□□□□ -1.36
USP54-201ENST00000339859 A0A1W2PNN7 141 aa6.57□□□□□ -1.36
USP54-201ENST00000339859 FAM30AQ9NZY2 134 aa6.57□□□□□ -1.36
USP54-201ENST00000339859 SSBP3-AS1Q7Z2R9 100 aa6.56□□□□□ -1.36
USP54-201ENST00000339859 PSORS1C2Q9UIG4 136 aa6.56□□□□□ -1.36
USP54-201ENST00000339859 RETNLBQ9BQ08 111 aa6.56□□□□□ -1.36
USP54-201ENST00000339859 DEFB116Q30KQ4 102 aa6.56□□□□□ -1.36
USP54-201ENST00000339859 IGLV5-37A0A075B6J1 123 aa6.56□□□□□ -1.36
USP54-201ENST00000339859 SZT2Q5T011 3432 aa6.56□□□□□ -1.36
USP54-201ENST00000339859 SETD2Q9BYW2 2564 aaPredicted RBP6.55□□□□□ -1.36
USP54-201ENST00000339859 C3orf22Q8N5N4 141 aa6.55□□□□□ -1.36
USP54-201ENST00000339859 HCG22E2RYF7 251 aa6.54□□□□□ -1.36
USP54-201ENST00000339859 BAHCC1Q9P281 2608 aa6.54□□□□□ -1.36
USP54-201ENST00000339859 LINC01547P58512 204 aaPredicted RBP6.54□□□□□ -1.36
USP54-201ENST00000339859 LINC00313P59037 77 aa6.54□□□□□ -1.36
USP54-201ENST00000339859 Q8N9L7 120 aa6.53□□□□□ -1.36
USP54-201ENST00000339859 FAM218AQ96MZ4 157 aa6.53□□□□□ -1.36
USP54-201ENST00000339859 MT-ATP8P03928 68 aa6.53□□□□□ -1.36
USP54-201ENST00000339859 LOC110117498A0A087WWA1 95 aa6.52□□□□□ -1.37
USP54-201ENST00000339859 CXCL6P80162 114 aa6.52□□□□□ -1.37
USP54-201ENST00000339859 ATP11AUNQ6ZP68 121 aa6.51□□□□□ -1.37
USP54-201ENST00000339859 SPTBN5Q9NRC6 3674 aaKnown RBP6.51□□□□□ -1.37
USP54-201ENST00000339859 MGAQ8IWI9 3026 aa6.51□□□□□ -1.37
USP54-201ENST00000339859 C8orf87E5RJ46 101 aa6.51□□□□□ -1.37
USP54-201ENST00000339859 TRBV7-4A0A0J9YYF1 115 aa6.5□□□□□ -1.37
USP54-201ENST00000339859 NDUFC1O43677 76 aa6.5□□□□□ -1.37
USP54-201ENST00000339859 C20orf197Q8N268 126 aa6.49□□□□□ -1.37
USP54-201ENST00000339859 SPRR4Q96PI1 79 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms