RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 BOD1L2Q8IYS8 172 aa13.97□□□□□ -0.17
SDC3-202ENST00000339394 C14orf144Q96I85 54 aa13.97□□□□□ -0.17
SDC3-202ENST00000339394 FAM19A5Q7Z5A7 132 aaPredicted RBP13.96□□□□□ -0.17
SDC3-202ENST00000339394 TP73-AS1Q9UF72 201 aa13.96□□□□□ -0.17
SDC3-202ENST00000339394 SERTAD4-AS1Q5TG53 156 aa13.96□□□□□ -0.18
SDC3-202ENST00000339394 FAT1Q14517 4588 aa13.96□□□□□ -0.18
SDC3-202ENST00000339394 DLEU1O43261 78 aa13.93□□□□□ -0.18
SDC3-202ENST00000339394 S100A12P80511 92 aa13.93□□□□□ -0.18
SDC3-202ENST00000339394 PLA2G2DQ9UNK4 145 aa13.93□□□□□ -0.18
SDC3-202ENST00000339394 TMEM238C9JI98 176 aa13.92□□□□□ -0.18
SDC3-202ENST00000339394 SMR3BP02814 79 aaPredicted RBP13.92□□□□□ -0.18
SDC3-202ENST00000339394 SMIM6P0DI80 62 aa13.92□□□□□ -0.18
SDC3-202ENST00000339394 LOC107984156A0A0G2JMH3 177 aa13.91□□□□□ -0.18
SDC3-202ENST00000339394 NPC2P61916 151 aa13.91□□□□□ -0.18
SDC3-202ENST00000339394 ARL17AQ8IVW1 177 aa13.91□□□□□ -0.18
SDC3-202ENST00000339394 Q8NDZ9 215 aa13.91□□□□□ -0.18
SDC3-202ENST00000339394 EIF4EBP3O60516 100 aaPredicted RBP13.9□□□□□ -0.18
SDC3-202ENST00000339394 MIEN1Q9BRT3 115 aa13.9□□□□□ -0.18
SDC3-202ENST00000339394 C22orf24Q9Y442 160 aa13.9□□□□□ -0.18
SDC3-202ENST00000339394 M0QXV9 152 aa13.89□□□□□ -0.19
SDC3-202ENST00000339394 SLC25A34Q6PIV7 304 aa13.89□□□□□ -0.19
SDC3-202ENST00000339394 SOSTDC1Q6X4U4 206 aa13.89□□□□□ -0.19
SDC3-202ENST00000339394 PHF5AQ7RTV0 110 aaKnown RBP13.89□□□□□ -0.19
SDC3-202ENST00000339394 VPREB1P12018 145 aa13.88□□□□□ -0.19
SDC3-202ENST00000339394 RPL24P83731 157 aaKnown RBP13.88□□□□□ -0.19
SDC3-202ENST00000339394 LINC00308Q8TCZ7 52 aa13.88□□□□□ -0.19
SDC3-202ENST00000339394 SPANXDQ9BXN6 97 aa13.88□□□□□ -0.19
SDC3-202ENST00000339394 SPANXCQ9NY87 97 aa13.88□□□□□ -0.19
SDC3-202ENST00000339394 IGLV5-37A0A075B6J1 123 aa13.87□□□□□ -0.19
SDC3-202ENST00000339394 Q6ZVH6 145 aa13.86□□□□□ -0.19
SDC3-202ENST00000339394 PRR3P79522 188 aaKnown RBP13.85□□□□□ -0.19
SDC3-202ENST00000339394 NKAPP1Q8N9T2 125 aa13.85□□□□□ -0.19
SDC3-202ENST00000339394 MRPL55Q7Z7F7 128 aaKnown RBP13.84□□□□□ -0.19
SDC3-202ENST00000339394 SPANXB1Q9NS25 103 aaPredicted RBP13.84□□□□□ -0.19
SDC3-202ENST00000339394 SRSF9Q13242 221 aaKnown RBP eCLIP13.83□□□□□ -0.19
SDC3-202ENST00000339394 VPS13BQ7Z7G8 4022 aa13.83□□□□□ -0.2
SDC3-202ENST00000339394 LINC00528Q8N1L1 170 aa13.83□□□□□ -0.2
SDC3-202ENST00000339394 C7orf33Q8WU49 177 aa13.83□□□□□ -0.2
SDC3-202ENST00000339394 IFITM1P13164 125 aa13.82□□□□□ -0.2
SDC3-202ENST00000339394 LBHQ53QV2 105 aaPredicted RBP13.82□□□□□ -0.2
SDC3-202ENST00000339394 C2orf91Q6ZV80 131 aa13.82□□□□□ -0.2
SDC3-202ENST00000339394 MUSTN1Q8IVN3 82 aa13.81□□□□□ -0.2
SDC3-202ENST00000339394 LINC00167Q96N53 147 aa13.81□□□□□ -0.2
SDC3-202ENST00000339394 KRTAP17-1Q9BYP8 105 aa13.81□□□□□ -0.2
SDC3-202ENST00000339394 GAGE10A6NGK3 116 aa13.8□□□□□ -0.2
SDC3-202ENST00000339394 NDUFC2O95298 119 aa13.8□□□□□ -0.2
SDC3-202ENST00000339394 COPS9Q8WXC6 57 aa13.8□□□□□ -0.2
SDC3-202ENST00000339394 HIGD1BQ9P298 99 aa13.8□□□□□ -0.2
SDC3-202ENST00000339394 NCR3O14931 201 aa13.79□□□□□ -0.2
SDC3-202ENST00000339394 UBE2BP63146 152 aa13.79□□□□□ -0.2
SDC3-202ENST00000339394 KRTAP11-1Q8IUC1 163 aa13.79□□□□□ -0.2
SDC3-202ENST00000339394 C12orf57Q99622 126 aa13.79□□□□□ -0.2
SDC3-202ENST00000339394 HERC2O95714 4834 aa13.78□□□□□ -0.2
SDC3-202ENST00000339394 M0R378 163 aa13.78□□□□□ -0.2
SDC3-202ENST00000339394 Q8N1X5 172 aa13.78□□□□□ -0.2
SDC3-202ENST00000339394 HIST1H4GQ99525 98 aa13.78□□□□□ -0.2
SDC3-202ENST00000339394 PPDPFQ9H3Y8 114 aa13.78□□□□□ -0.2
SDC3-202ENST00000339394 UQCR10Q9UDW1 63 aa13.78□□□□□ -0.2
SDC3-202ENST00000339394 RPL37AP8A6NKH3 93 aa13.77□□□□□ -0.21
SDC3-202ENST00000339394 FAM229AH3BQW9 127 aa13.76□□□□□ -0.21
SDC3-202ENST00000339394 PRO1933Q9H354 126 aa13.75□□□□□ -0.21
SDC3-202ENST00000339394 TRBV10-2A0A0K0K1G8 114 aa13.75□□□□□ -0.21
SDC3-202ENST00000339394 IGLV1-50A0A075B6I6 118 aa13.74□□□□□ -0.21
SDC3-202ENST00000339394 IGKV2-28A0A075B6P5 120 aa13.74□□□□□ -0.21
SDC3-202ENST00000339394 IGKV2D-28P01615 120 aa13.74□□□□□ -0.21
SDC3-202ENST00000339394 Q5VSD8 79 aa13.74□□□□□ -0.21
SDC3-202ENST00000339394 PSORS1C2Q9UIG4 136 aa13.74□□□□□ -0.21
SDC3-202ENST00000339394 RPL37AP61513 92 aaKnown RBP13.72□□□□□ -0.21
SDC3-202ENST00000339394 LINC00518Q8N0U6 118 aa13.71□□□□□ -0.21
SDC3-202ENST00000339394 TRBV10-3A0A0K0K1G6 114 aa13.7□□□□□ -0.22
SDC3-202ENST00000339394 KRTAP10-4P60372 401 aaPredicted RBP13.69□□□□□ -0.22
SDC3-202ENST00000339394 A4D1N5 150 aa13.68□□□□□ -0.22
SDC3-202ENST00000339394 PLA2G1BP04054 148 aaKnown RBP13.68□□□□□ -0.22
SDC3-202ENST00000339394 S100A7L2Q5SY68 101 aa13.68□□□□□ -0.22
SDC3-202ENST00000339394 IGLV6-57P01721 117 aa13.67□□□□□ -0.22
SDC3-202ENST00000339394 DDTP30046 118 aa13.67□□□□□ -0.22
SDC3-202ENST00000339394 TAL2Q16559 108 aa13.67□□□□□ -0.22
SDC3-202ENST00000339394 C1orf137Q5JT78 98 aa13.67□□□□□ -0.22
SDC3-202ENST00000339394 LINC00337Q8N6G1 96 aa13.67□□□□□ -0.22
SDC3-202ENST00000339394 SRRM2Q9UQ35 2752 aaKnown RBP13.67□□□□□ -0.22
SDC3-202ENST00000339394 HNRNPA3P51991 378 aaKnown RBP13.66□□□□□ -0.22
SDC3-202ENST00000339394 CEND1Q8N111 149 aa13.65□□□□□ -0.22
SDC3-202ENST00000339394 OR13C6PQ8NH95 151 aa13.65□□□□□ -0.22
SDC3-202ENST00000339394 KCNQ1DNQ9H478 68 aa13.64□□□□□ -0.23
SDC3-202ENST00000339394 TSTD3H0UI37 97 aa13.63□□□□□ -0.23
SDC3-202ENST00000339394 HSD52Q0P140 79 aa13.63□□□□□ -0.23
SDC3-202ENST00000339394 TMEM126AQ9H061 195 aa13.63□□□□□ -0.23
SDC3-202ENST00000339394 REG3GQ6UW15 175 aa13.62□□□□□ -0.23
SDC3-202ENST00000339394 KRTAP4-5Q9BYR2 181 aa13.62□□□□□ -0.23
SDC3-202ENST00000339394 A6NDN8 102 aa13.61□□□□□ -0.23
SDC3-202ENST00000339394 TRAV13-2A0A0B4J235 113 aa13.6□□□□□ -0.23
SDC3-202ENST00000339394 PRYO14603 147 aa13.6□□□□□ -0.23
SDC3-202ENST00000339394 BCE1O60756 84 aa13.6□□□□□ -0.23
SDC3-202ENST00000339394 TRAV23DV6A0A075B6W5 121 aa13.58□□□□□ -0.23
SDC3-202ENST00000339394 IGLV7-43P04211 117 aa13.58□□□□□ -0.23
SDC3-202ENST00000339394 FXYD2P54710 66 aa13.58□□□□□ -0.23
SDC3-202ENST00000339394 SPRR1AP35321 89 aa13.58□□□□□ -0.24
SDC3-202ENST00000339394 CFC1BP0CG36 223 aa13.57□□□□□ -0.24
SDC3-202ENST00000339394 CFC1P0CG37 223 aa13.57□□□□□ -0.24
SDC3-202ENST00000339394 TMEM238LA0A1B0GVL6 79 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms