RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 UBE2AP49459 152 aa15.8■□□□□ 0.12
CDKN2A-201ENST00000304494 HERV-K104P63124 156 aa15.79■□□□□ 0.12
CDKN2A-201ENST00000304494 LRP2P98164 4655 aa15.77■□□□□ 0.12
CDKN2A-201ENST00000304494 ATP6V1G1O75348 118 aa15.77■□□□□ 0.12
CDKN2A-201ENST00000304494 PLNP26678 52 aa15.77■□□□□ 0.12
CDKN2A-201ENST00000304494 A0A0U1RRA0 63 aa15.76■□□□□ 0.11
CDKN2A-201ENST00000304494 LINC00587B1AMM8 73 aa15.76■□□□□ 0.11
CDKN2A-201ENST00000304494 MEIG1Q5JSS6 88 aa15.76■□□□□ 0.11
CDKN2A-201ENST00000304494 KRTAP13-1Q8IUC0 172 aa15.76■□□□□ 0.11
CDKN2A-201ENST00000304494 Q8NDZ9 215 aa15.75■□□□□ 0.11
CDKN2A-201ENST00000304494 SMIM13P0DJ93 91 aa15.74■□□□□ 0.11
CDKN2A-201ENST00000304494 FABP4P15090 132 aa15.74■□□□□ 0.11
CDKN2A-201ENST00000304494 TMEM126AQ9H061 195 aa15.74■□□□□ 0.11
CDKN2A-201ENST00000304494 NDUFA12Q9UI09 145 aa15.74■□□□□ 0.11
CDKN2A-201ENST00000304494 MYMXA0A1B0GTQ4 84 aa15.73■□□□□ 0.11
CDKN2A-201ENST00000304494 TMEM238C9JI98 176 aa15.7■□□□□ 0.1
CDKN2A-201ENST00000304494 DPM2O94777 84 aa15.7■□□□□ 0.1
CDKN2A-201ENST00000304494 CRYGAP11844 174 aa15.7■□□□□ 0.1
CDKN2A-201ENST00000304494 FAM19A1Q7Z5A9 133 aa15.7■□□□□ 0.1
CDKN2A-201ENST00000304494 PLEKHB2Q96CS7 222 aa15.7■□□□□ 0.1
CDKN2A-201ENST00000304494 MAP1LC3CQ9BXW4 147 aa15.7■□□□□ 0.1
CDKN2A-201ENST00000304494 M0R378 163 aa15.69■□□□□ 0.1
CDKN2A-201ENST00000304494 LEPROTO15243 131 aa15.69■□□□□ 0.1
CDKN2A-201ENST00000304494 HERVK_113P61574 105 aa15.69■□□□□ 0.1
CDKN2A-201ENST00000304494 MIR7-3HGQ8N6C7 128 aa15.69■□□□□ 0.1
CDKN2A-201ENST00000304494 LCE2DQ5TA82 110 aaPredicted RBP15.68■□□□□ 0.1
CDKN2A-201ENST00000304494 IGKCP01834 107 aa15.67■□□□□ 0.1
CDKN2A-201ENST00000304494 PRLHP81277 87 aa15.67■□□□□ 0.1
CDKN2A-201ENST00000304494 BOD1L2Q8IYS8 172 aa15.67■□□□□ 0.1
CDKN2A-201ENST00000304494 A0A087X002 238 aa15.66■□□□□ 0.1
CDKN2A-201ENST00000304494 TSPEAR-AS2P59090 65 aa15.65■□□□□ 0.1
CDKN2A-201ENST00000304494 PMCHL2Q9BQD1 86 aa15.65■□□□□ 0.1
CDKN2A-201ENST00000304494 J3QQQ9 107 aa15.63■□□□□ 0.09
CDKN2A-201ENST00000304494 TYMSOSQ8TAI1 123 aa15.63■□□□□ 0.09
CDKN2A-201ENST00000304494 IGKV2D-26A0A0A0MRZ7 120 aa15.62■□□□□ 0.09
CDKN2A-201ENST00000304494 NMUP48645 174 aa15.62■□□□□ 0.09
CDKN2A-201ENST00000304494 FAM229BQ4G0N7 80 aa15.62■□□□□ 0.09
CDKN2A-201ENST00000304494 HIST1H2BKO60814 126 aa15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 HIST1H2BJP06899 126 aa15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 LGALS3P17931 250 aaKnown RBP15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 HIST1H2BOP23527 126 aa15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 HIST1H2BBP33778 126 aa15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 HIST1H2BDP58876 126 aa15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 HIST1H2BCP62807 126 aa15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 HIST2H2BEQ16778 126 aa15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 HIST1H2BHQ93079 126 aa15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 HIST1H2BNQ99877 126 aa15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 HIST1H2BMQ99879 126 aa15.61■□□□□ 0.09
CDKN2A-201ENST00000304494 ANAPC11Q9NYG5 84 aa15.6■□□□□ 0.09
CDKN2A-201ENST00000304494 NCR3O14931 201 aa15.59■□□□□ 0.09
CDKN2A-201ENST00000304494 PRYO14603 147 aa15.57■□□□□ 0.08
CDKN2A-201ENST00000304494 LOC107984156A0A0G2JMH3 177 aa15.56■□□□□ 0.08
CDKN2A-201ENST00000304494 ARL17AQ8IVW1 177 aa15.56■□□□□ 0.08
CDKN2A-201ENST00000304494 DAND5Q8N907 189 aa15.55■□□□□ 0.08
CDKN2A-201ENST00000304494 HIGD2AQ9BW72 106 aa15.55■□□□□ 0.08
CDKN2A-201ENST00000304494 SYS1-DBNDD2H3BUS1 97 aa15.54■□□□□ 0.08
CDKN2A-201ENST00000304494 KRTAP13-2Q52LG2 175 aa15.54■□□□□ 0.08
CDKN2A-201ENST00000304494 KCNQ1DNQ9H478 68 aa15.54■□□□□ 0.08
CDKN2A-201ENST00000304494 S100A12P80511 92 aa15.53■□□□□ 0.08
CDKN2A-201ENST00000304494 MIEN1Q9BRT3 115 aa15.53■□□□□ 0.08
CDKN2A-201ENST00000304494 E9PLD3 99 aa15.52■□□□□ 0.08
CDKN2A-201ENST00000304494 TSPAN13O95857 204 aa15.52■□□□□ 0.08
CDKN2A-201ENST00000304494 LINC00337Q8N6G1 96 aa15.52■□□□□ 0.08
CDKN2A-201ENST00000304494 RNF213Q63HN8 5207 aa15.52■□□□□ 0.07
CDKN2A-201ENST00000304494 PRR4Q16378 134 aa15.51■□□□□ 0.07
CDKN2A-201ENST00000304494 LPAP08519 4548 aa15.51■□□□□ 0.07
CDKN2A-201ENST00000304494 SPRR1AP35321 89 aa15.5■□□□□ 0.07
CDKN2A-201ENST00000304494 TRBV10-3A0A0K0K1G6 114 aa15.49■□□□□ 0.07
CDKN2A-201ENST00000304494 TRBV10-2A0A0K0K1G8 114 aa15.49■□□□□ 0.07
CDKN2A-201ENST00000304494 ETDCA0A1B0GVM5 59 aa15.48■□□□□ 0.07
CDKN2A-201ENST00000304494 ZNF706Q9Y5V0 76 aaPredicted RBP15.48■□□□□ 0.07
CDKN2A-201ENST00000304494 PET117Q6UWS5 81 aa15.47■□□□□ 0.07
CDKN2A-201ENST00000304494 SPANXB1Q9NS25 103 aaPredicted RBP15.47■□□□□ 0.07
CDKN2A-201ENST00000304494 LINC01545Q5VT33 79 aa15.46■□□□□ 0.07
CDKN2A-201ENST00000304494 A0A0J9YXY3 114 aa15.45■□□□□ 0.06
CDKN2A-201ENST00000304494 NDUFC2O95298 119 aa15.45■□□□□ 0.06
CDKN2A-201ENST00000304494 DDTP30046 118 aa15.45■□□□□ 0.06
CDKN2A-201ENST00000304494 LINC00304Q8N9R0 145 aa15.45■□□□□ 0.06
CDKN2A-201ENST00000304494 KRTAP4-16G5E9R7 235 aaPredicted RBP15.44■□□□□ 0.06
CDKN2A-201ENST00000304494 SPRR4Q96PI1 79 aa15.44■□□□□ 0.06
CDKN2A-201ENST00000304494 COA6Q5JTJ3 125 aaKnown RBP15.42■□□□□ 0.06
CDKN2A-201ENST00000304494 S100A7L2Q5SY68 101 aa15.4■□□□□ 0.06
CDKN2A-201ENST00000304494 CTAG1AP78358 180 aa15.39■□□□□ 0.05
CDKN2A-201ENST00000304494 ADAMTSL4-AS1Q5T5F5 129 aa15.39■□□□□ 0.05
CDKN2A-201ENST00000304494 SMCR5Q8TEV8 140 aa15.39■□□□□ 0.05
CDKN2A-201ENST00000304494 C3orf79P0CE67 100 aa15.38■□□□□ 0.05
CDKN2A-201ENST00000304494 B5MCH6 92 aa15.37■□□□□ 0.05
CDKN2A-201ENST00000304494 NPC2P61916 151 aa15.37■□□□□ 0.05
CDKN2A-201ENST00000304494 C3orf22Q8N5N4 141 aa15.37■□□□□ 0.05
CDKN2A-201ENST00000304494 IGLV6-57P01721 117 aa15.36■□□□□ 0.05
CDKN2A-201ENST00000304494 SOSTDC1Q6X4U4 206 aa15.36■□□□□ 0.05
CDKN2A-201ENST00000304494 KRTDAPP60985 99 aa15.35■□□□□ 0.05
CDKN2A-201ENST00000304494 TIMM17BO60830 172 aa15.34■□□□□ 0.05
CDKN2A-201ENST00000304494 ZNF815PA8K554 130 aa15.33■□□□□ 0.04
CDKN2A-201ENST00000304494 TRAV23DV6A0A075B6W5 121 aa15.32■□□□□ 0.04
CDKN2A-201ENST00000304494 EIF4EBP3O60516 100 aaPredicted RBP15.32■□□□□ 0.04
CDKN2A-201ENST00000304494 LITAFQ99732 161 aa15.32■□□□□ 0.04
CDKN2A-201ENST00000304494 C20orf202A1L168 122 aa15.31■□□□□ 0.04
CDKN2A-201ENST00000304494 Q6ZRX8 168 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms