RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 CYSRT1A8MQ03 144 aa3.77□□□□□ -1.81
SCN1A-201ENST00000303395 C1orf134Q5TEV5 83 aa3.77□□□□□ -1.81
SCN1A-201ENST00000303395 LINC00167Q96N53 147 aa3.77□□□□□ -1.81
SCN1A-201ENST00000303395 Q8N3U1 123 aa3.77□□□□□ -1.81
SCN1A-201ENST00000303395 DMBT1Q9UGM3 2413 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-201ENST00000303395 LINC00483Q53H64 154 aa3.76□□□□□ -1.81
SCN1A-201ENST00000303395 A8MZ25 164 aa3.76□□□□□ -1.81
SCN1A-201ENST00000303395 OBSCN-AS1Q96MR7 158 aa3.76□□□□□ -1.81
SCN1A-201ENST00000303395 LINC00959A0A1B0GUT2 108 aa3.76□□□□□ -1.81
SCN1A-201ENST00000303395 C8orf17Q9NRJ1 99 aa3.76□□□□□ -1.81
SCN1A-201ENST00000303395 BPTFQ12830 3046 aa3.75□□□□□ -1.81
SCN1A-201ENST00000303395 MOBPQ13875 183 aa3.75□□□□□ -1.81
SCN1A-201ENST00000303395 Q6ZTI0 123 aa3.75□□□□□ -1.81
SCN1A-201ENST00000303395 C11orf21Q9P2W6 132 aa3.75□□□□□ -1.81
SCN1A-201ENST00000303395 LINC00315P59091 139 aa3.75□□□□□ -1.81
SCN1A-201ENST00000303395 SMCPP49901 116 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-201ENST00000303395 C1orf64Q8NEQ6 169 aa3.75□□□□□ -1.81
SCN1A-201ENST00000303395 Q6ZSV7 163 aa3.75□□□□□ -1.81
SCN1A-201ENST00000303395 IGF2RP11717 2491 aa3.74□□□□□ -1.81
SCN1A-201ENST00000303395 STAB1Q9NY15 2570 aa3.74□□□□□ -1.81
SCN1A-201ENST00000303395 TRBV7-4A0A0J9YYF1 115 aa3.74□□□□□ -1.81
SCN1A-201ENST00000303395 UNQ9165/PRO28630Q6UXU0 137 aa3.74□□□□□ -1.81
SCN1A-201ENST00000303395 IGHV3OR16-9A0A0B4J2B5 98 aa3.74□□□□□ -1.81
SCN1A-201ENST00000303395 Q6ZS46 218 aa3.74□□□□□ -1.81
SCN1A-201ENST00000303395 TRAV22A0A0B4J277 110 aa3.74□□□□□ -1.81
SCN1A-201ENST00000303395 SPACA4Q8TDM5 124 aa3.74□□□□□ -1.81
SCN1A-201ENST00000303395 APLNQ9ULZ1 77 aa3.74□□□□□ -1.81
SCN1A-201ENST00000303395 PRM2P04554 102 aa3.74□□□□□ -1.81
SCN1A-201ENST00000303395 C16orf95Q9H693 158 aa3.74□□□□□ -1.81
SCN1A-201ENST00000303395 COL27A1Q8IZC6 1860 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-201ENST00000303395 BAHCC1Q9P281 2608 aa3.73□□□□□ -1.81
SCN1A-201ENST00000303395 IGLV8-61A0A075B6I0 122 aa3.73□□□□□ -1.81
SCN1A-201ENST00000303395 INAFM1C9JVW0 142 aa3.73□□□□□ -1.81
SCN1A-201ENST00000303395 CHD8Q9HCK8 2581 aa3.73□□□□□ -1.81
SCN1A-201ENST00000303395 CEMP1Q6PRD7 247 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-201ENST00000303395 PRR15Q8IV56 129 aa3.72□□□□□ -1.81
SCN1A-201ENST00000303395 LOC101927531A0A1B0GV80 90 aa3.72□□□□□ -1.81
SCN1A-201ENST00000303395 LINC00313P59037 77 aa3.72□□□□□ -1.81
SCN1A-201ENST00000303395 LYPD5Q6UWN5 251 aa3.72□□□□□ -1.81
SCN1A-201ENST00000303395 TSPEAR-AS2P59090 65 aa3.72□□□□□ -1.81
SCN1A-201ENST00000303395 LITAFQ99732 161 aa3.72□□□□□ -1.81
SCN1A-201ENST00000303395 LINC00846Q9NV44 126 aa3.72□□□□□ -1.81
SCN1A-201ENST00000303395 Q6ZQT0 140 aa3.72□□□□□ -1.81
SCN1A-201ENST00000303395 Q8NBF4 154 aa3.71□□□□□ -1.81
SCN1A-201ENST00000303395 EPM2AB3EWF7 344 aa3.71□□□□□ -1.82
SCN1A-201ENST00000303395 KTN1-AS1Q86SY8 53 aa3.71□□□□□ -1.82
SCN1A-201ENST00000303395 C19orf84I3L1E1 186 aa3.71□□□□□ -1.82
SCN1A-201ENST00000303395 IGLV1-51P01701 117 aa3.71□□□□□ -1.82
SCN1A-201ENST00000303395 PLA2G2DQ9UNK4 145 aa3.71□□□□□ -1.82
SCN1A-201ENST00000303395 A0A087WSZ3 146 aa3.7□□□□□ -1.82
SCN1A-201ENST00000303395 PRR9Q5T870 116 aa3.7□□□□□ -1.82
SCN1A-201ENST00000303395 BBC3Q96PG8 261 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-201ENST00000303395 Q1T7F1 81 aa3.7□□□□□ -1.82
SCN1A-201ENST00000303395 TYMSOSQ8TAI1 123 aa3.7□□□□□ -1.82
SCN1A-201ENST00000303395 ADAMTSL4-AS1Q5T5F5 129 aa3.69□□□□□ -1.82
SCN1A-201ENST00000303395 C9orf129Q5T035 196 aaKnown RBP3.69□□□□□ -1.82
SCN1A-201ENST00000303395 RBM12B-AS1Q9P1G2 102 aa3.69□□□□□ -1.82
SCN1A-201ENST00000303395 IGLV6-57P01721 117 aa3.69□□□□□ -1.82
SCN1A-201ENST00000303395 FHL3Q13643 280 aa3.69□□□□□ -1.82
SCN1A-201ENST00000303395 A0A087WVE0 104 aa3.69□□□□□ -1.82
SCN1A-201ENST00000303395 Q6ZRP5 223 aa3.68□□□□□ -1.82
SCN1A-201ENST00000303395 UQCR11O14957 56 aa3.68□□□□□ -1.82
SCN1A-201ENST00000303395 HECTD1Q9ULT8 2610 aa3.67□□□□□ -1.82
SCN1A-201ENST00000303395 IGLV4-60A0A075B6I1 120 aa3.67□□□□□ -1.82
SCN1A-201ENST00000303395 DEFB116Q30KQ4 102 aa3.67□□□□□ -1.82
SCN1A-201ENST00000303395 PRO3102Q9H379 93 aa3.67□□□□□ -1.82
SCN1A-201ENST00000303395 C16orf90A8MZG2 172 aa3.66□□□□□ -1.82
SCN1A-201ENST00000303395 CDC42SE1Q9NRR8 79 aa3.66□□□□□ -1.82
SCN1A-201ENST00000303395 COX6A2Q02221 97 aa3.66□□□□□ -1.82
SCN1A-201ENST00000303395 PSORS1C2Q9UIG4 136 aa3.66□□□□□ -1.82
SCN1A-201ENST00000303395 A0A087WYN8 130 aa3.66□□□□□ -1.82
SCN1A-201ENST00000303395 ODF3L2Q3SX64 289 aa3.66□□□□□ -1.82
SCN1A-201ENST00000303395 Q96NJ1 140 aa3.66□□□□□ -1.82
SCN1A-201ENST00000303395 A0A0A0MQY5 61 aa3.65□□□□□ -1.82
SCN1A-201ENST00000303395 AVPP01185 164 aa3.65□□□□□ -1.82
SCN1A-201ENST00000303395 H7BZZ5 65 aa3.65□□□□□ -1.83
SCN1A-201ENST00000303395 GRNP28799 593 aaKnown RBP3.65□□□□□ -1.83
SCN1A-201ENST00000303395 TLX1NBP0CAT3 122 aa3.65□□□□□ -1.83
SCN1A-201ENST00000303395 LINC00612Q8N6U2 182 aa3.65□□□□□ -1.83
SCN1A-201ENST00000303395 Q9UF83 564 aa3.65□□□□□ -1.83
SCN1A-201ENST00000303395 CAMK2N1Q7Z7J9 78 aa3.64□□□□□ -1.83
SCN1A-201ENST00000303395 ANKRD11Q6UB99 2663 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-201ENST00000303395 Q6ZRX8 168 aa3.64□□□□□ -1.83
SCN1A-201ENST00000303395 DEFB1P60022 68 aa3.64□□□□□ -1.83
SCN1A-201ENST00000303395 Q6ZRU5 148 aa3.64□□□□□ -1.83
SCN1A-201ENST00000303395 KCNQ1DNQ9H478 68 aa3.64□□□□□ -1.83
SCN1A-201ENST00000303395 IGLV5-37A0A075B6J1 123 aa3.63□□□□□ -1.83
SCN1A-201ENST00000303395 A0A1W2PNU3 283 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-201ENST00000303395 CFAP46Q8IYW2 2715 aa3.63□□□□□ -1.83
SCN1A-201ENST00000303395 PROK1P58294 105 aa3.63□□□□□ -1.83
SCN1A-201ENST00000303395 UNQ6190/PRO20217Q6UXQ8 127 aa3.63□□□□□ -1.83
SCN1A-201ENST00000303395 LCA10Q71F78 164 aa3.63□□□□□ -1.83
SCN1A-201ENST00000303395 IGLV5-48A0A075B6I7 105 aa3.62□□□□□ -1.83
SCN1A-201ENST00000303395 CEP295Q9C0D2 2601 aa3.62□□□□□ -1.83
SCN1A-201ENST00000303395 PLA2G5P39877 138 aa3.62□□□□□ -1.83
SCN1A-201ENST00000303395 MIR22HGQ0VDD5 57 aa3.62□□□□□ -1.83
SCN1A-201ENST00000303395 PRRC2CQ9Y520 2896 aaKnown RBP3.62□□□□□ -1.83
SCN1A-201ENST00000303395 A8MUN3 132 aa3.61□□□□□ -1.83
SCN1A-201ENST00000303395 A8MWP4 228 aa3.61□□□□□ -1.83
SCN1A-201ENST00000303395 LINC00528Q8N1L1 170 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms