RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 C9orf116Q5BN46 136 aaPredicted RBP4.55□□□□□ -1.68
VPS35-201ENST00000299138 ADAMTSL4-AS1Q5T5F5 129 aa4.55□□□□□ -1.68
VPS35-201ENST00000299138 Q8N2B8 174 aa4.55□□□□□ -1.68
VPS35-201ENST00000299138 M0R2N4 97 aa4.55□□□□□ -1.68
VPS35-201ENST00000299138 LINC00336Q6ZUF6 198 aa4.55□□□□□ -1.68
VPS35-201ENST00000299138 Q9BRP9 147 aa4.55□□□□□ -1.68
VPS35-201ENST00000299138 PRR14LQ5THK1 2151 aa4.55□□□□□ -1.68
VPS35-201ENST00000299138 MAP6D1Q9H9H5 199 aa4.55□□□□□ -1.68
VPS35-201ENST00000299138 PRRC2AP48634 2157 aaKnown RBP4.55□□□□□ -1.68
VPS35-201ENST00000299138 SPEGQ15772 3267 aa4.55□□□□□ -1.68
VPS35-201ENST00000299138 LOC110117498A0A087WWA1 95 aa4.55□□□□□ -1.68
VPS35-201ENST00000299138 LUZP6Q538Z0 58 aa4.55□□□□□ -1.68
VPS35-201ENST00000299138 C2orf48Q96LS8 159 aa4.54□□□□□ -1.68
VPS35-201ENST00000299138 LINC00167Q96N53 147 aa4.54□□□□□ -1.68
VPS35-201ENST00000299138 PTPRQQ9UMZ3 2332 aa4.54□□□□□ -1.68
VPS35-201ENST00000299138 C5orf42Q9H799 3197 aa4.54□□□□□ -1.68
VPS35-201ENST00000299138 C11orf72Q8NBR9 251 aa4.54□□□□□ -1.68
VPS35-201ENST00000299138 LINC00959A0A1B0GUT2 108 aa4.54□□□□□ -1.68
VPS35-201ENST00000299138 REG3GQ6UW15 175 aa4.54□□□□□ -1.68
VPS35-201ENST00000299138 LINC01548A6NM66 108 aa4.53□□□□□ -1.68
VPS35-201ENST00000299138 CD164L2Q6UWJ8 174 aa4.53□□□□□ -1.68
VPS35-201ENST00000299138 DEFB131BA0A096LNP1 70 aa4.53□□□□□ -1.68
VPS35-201ENST00000299138 ZFHX4Q86UP3 3567 aa4.53□□□□□ -1.68
VPS35-201ENST00000299138 CDSNQ15517 529 aa4.53□□□□□ -1.68
VPS35-201ENST00000299138 NBASA2RRP1 2371 aa4.53□□□□□ -1.68
VPS35-201ENST00000299138 Q6YL49 198 aa4.53□□□□□ -1.68
VPS35-201ENST00000299138 IGF2RP11717 2491 aa4.52□□□□□ -1.69
VPS35-201ENST00000299138 NCOR2Q9Y618 2525 aa4.52□□□□□ -1.69
VPS35-201ENST00000299138 PLA2G2DQ9UNK4 145 aa4.52□□□□□ -1.69
VPS35-201ENST00000299138 LYPD5Q6UWN5 251 aa4.52□□□□□ -1.69
VPS35-201ENST00000299138 BBC3Q96PG8 261 aaPredicted RBP4.52□□□□□ -1.69
VPS35-201ENST00000299138 J3QKU1 62 aa4.51□□□□□ -1.69
VPS35-201ENST00000299138 KLKP1Q107X0 134 aa4.51□□□□□ -1.69
VPS35-201ENST00000299138 AGRNO00468 2067 aa4.51□□□□□ -1.69
VPS35-201ENST00000299138 CEP295Q9C0D2 2601 aa4.51□□□□□ -1.69
VPS35-201ENST00000299138 MIR22HGQ0VDD5 57 aa4.51□□□□□ -1.69
VPS35-201ENST00000299138 C9orf129Q5T035 196 aaKnown RBP4.51□□□□□ -1.69
VPS35-201ENST00000299138 IGHV3OR16-9A0A0B4J2B5 98 aa4.51□□□□□ -1.69
VPS35-201ENST00000299138 CFAP54Q96N23 3096 aa4.51□□□□□ -1.69
VPS35-201ENST00000299138 FHL2Q14192 279 aa4.51□□□□□ -1.69
VPS35-201ENST00000299138 UNQ6190/PRO20217Q6UXQ8 127 aa4.51□□□□□ -1.69
VPS35-201ENST00000299138 TM2D3Q9BRN9 247 aa4.51□□□□□ -1.69
VPS35-201ENST00000299138 COX6A2Q02221 97 aa4.5□□□□□ -1.69
VPS35-201ENST00000299138 CSNK1G2-AS1Q8NCQ2 148 aa4.5□□□□□ -1.69
VPS35-201ENST00000299138 UQCR11O14957 56 aa4.5□□□□□ -1.69
VPS35-201ENST00000299138 C1orf134Q5TEV5 83 aa4.49□□□□□ -1.69
VPS35-201ENST00000299138 CYP4F30PQ9H0H9 118 aa4.49□□□□□ -1.69
VPS35-201ENST00000299138 PCNX1Q96RV3 2341 aa4.49□□□□□ -1.69
VPS35-201ENST00000299138 DEFB113Q30KQ7 82 aa4.49□□□□□ -1.69
VPS35-201ENST00000299138 C6orf223Q8N319 242 aa4.49□□□□□ -1.69
VPS35-201ENST00000299138 C10orf99Q6UWK7 81 aa4.48□□□□□ -1.69
VPS35-201ENST00000299138 COA5Q86WW8 74 aa4.48□□□□□ -1.69
VPS35-201ENST00000299138 LINC00482Q8N8I6 264 aa4.48□□□□□ -1.69
VPS35-201ENST00000299138 TLN1Q9Y490 2541 aaKnown RBP4.48□□□□□ -1.69
VPS35-201ENST00000299138 GVQW2A0A096LPI5 108 aaPredicted RBP4.48□□□□□ -1.69
VPS35-201ENST00000299138 LINC00337Q8N6G1 96 aa4.48□□□□□ -1.69
VPS35-201ENST00000299138 SPTAN1Q13813 2472 aaKnown RBP4.48□□□□□ -1.69
VPS35-201ENST00000299138 KPRPQ5T749 579 aaPredicted RBP4.48□□□□□ -1.69
VPS35-201ENST00000299138 LINC01556Q5JQF7 62 aa4.47□□□□□ -1.69
VPS35-201ENST00000299138 SPATA3Q8NHX4 192 aa4.47□□□□□ -1.69
VPS35-201ENST00000299138 PIEZO2Q9H5I5 2752 aa4.46□□□□□ -1.7
VPS35-201ENST00000299138 A0A1W2PPR1 153 aa4.46□□□□□ -1.7
VPS35-201ENST00000299138 LOC101927531A0A1B0GV80 90 aa4.46□□□□□ -1.7
VPS35-201ENST00000299138 TP53AIP1Q9HCN2 124 aa4.46□□□□□ -1.7
VPS35-201ENST00000299138 RBM12B-AS1Q9P1G2 102 aa4.45□□□□□ -1.7
VPS35-201ENST00000299138 ODF3L2Q3SX64 289 aa4.45□□□□□ -1.7
VPS35-201ENST00000299138 KIAA0087Q14695 138 aa4.45□□□□□ -1.7
VPS35-201ENST00000299138 RPL37AP61513 92 aaKnown RBP4.45□□□□□ -1.7
VPS35-201ENST00000299138 FAM104AQ969W3 186 aa4.45□□□□□ -1.7
VPS35-201ENST00000299138 LINC00612Q8N6U2 182 aa4.45□□□□□ -1.7
VPS35-201ENST00000299138 TRAV22A0A0B4J277 110 aa4.44□□□□□ -1.7
VPS35-201ENST00000299138 LOC400499M0QZD8 3231 aa4.44□□□□□ -1.7
VPS35-201ENST00000299138 A0A0A0MQY5 61 aa4.44□□□□□ -1.7
VPS35-201ENST00000299138 EGFEM1PQ0D2K5 195 aa4.44□□□□□ -1.7
VPS35-201ENST00000299138 LELP1Q5T871 98 aa4.44□□□□□ -1.7
VPS35-201ENST00000299138 CDC42SE1Q9NRR8 79 aa4.44□□□□□ -1.7
VPS35-201ENST00000299138 H3BPC8 53 aa4.43□□□□□ -1.7
VPS35-201ENST00000299138 C16orf95Q9H693 158 aa4.43□□□□□ -1.7
VPS35-201ENST00000299138 SPACA4Q8TDM5 124 aa4.43□□□□□ -1.7
VPS35-201ENST00000299138 LY6G6CO95867 125 aa4.43□□□□□ -1.7
VPS35-201ENST00000299138 SMCR5Q8TEV8 140 aa4.43□□□□□ -1.7
VPS35-201ENST00000299138 ANKRD11Q6UB99 2663 aaPredicted RBP4.43□□□□□ -1.7
VPS35-201ENST00000299138 A0A0D9SG42 100 aa4.42□□□□□ -1.7
VPS35-201ENST00000299138 EPM2AB3EWF7 344 aa4.42□□□□□ -1.7
VPS35-201ENST00000299138 CACNA1AO00555 2505 aa4.42□□□□□ -1.7
VPS35-201ENST00000299138 IGLV1-51P01701 117 aa4.42□□□□□ -1.7
VPS35-201ENST00000299138 CFAP47Q6ZTR5 3102 aa4.42□□□□□ -1.7
VPS35-201ENST00000299138 Q6ZQT0 140 aa4.42□□□□□ -1.7
VPS35-201ENST00000299138 FAM218AQ96MZ4 157 aa4.42□□□□□ -1.7
VPS35-201ENST00000299138 IGLV4-60A0A075B6I1 120 aa4.41□□□□□ -1.7
VPS35-201ENST00000299138 LAMA1P25391 3075 aa4.41□□□□□ -1.7
VPS35-201ENST00000299138 H3BNG1 76 aa4.41□□□□□ -1.7
VPS35-201ENST00000299138 ACACBO00763 2458 aa4.41□□□□□ -1.7
VPS35-201ENST00000299138 PRR15Q8IV56 129 aa4.41□□□□□ -1.7
VPS35-201ENST00000299138 LINC01006Q8NI28 216 aa4.41□□□□□ -1.7
VPS35-201ENST00000299138 FAM208BQ5VWN6 2430 aa4.4□□□□□ -1.71
VPS35-201ENST00000299138 Q6ZSN1 163 aa4.4□□□□□ -1.71
VPS35-201ENST00000299138 TRBV7-4A0A0J9YYF1 115 aa4.39□□□□□ -1.71
VPS35-201ENST00000299138 LAMA5O15230 3695 aa4.39□□□□□ -1.71
VPS35-201ENST00000299138 SPENQ96T58 3664 aaKnown RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms