RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 C9orf129Q5T035 196 aaKnown RBP8.58□□□□□ -1.04
PCF11-201ENST00000298281 A0A1B0GUV1 79 aa8.58□□□□□ -1.04
PCF11-201ENST00000298281 PKD1L2Q7Z442 2459 aa8.58□□□□□ -1.04
PCF11-201ENST00000298281 SMIM29Q86T20 159 aa8.57□□□□□ -1.04
PCF11-201ENST00000298281 Q8N2B8 174 aa8.55□□□□□ -1.04
PCF11-201ENST00000298281 PRO3102Q9H379 93 aa8.55□□□□□ -1.04
PCF11-201ENST00000298281 C22orf24Q9Y442 160 aa8.55□□□□□ -1.04
PCF11-201ENST00000298281 TRAV22A0A0B4J277 110 aa8.55□□□□□ -1.04
PCF11-201ENST00000298281 COX8CQ7Z4L0 72 aa8.55□□□□□ -1.04
PCF11-201ENST00000298281 C16orf95Q9H693 158 aa8.55□□□□□ -1.04
PCF11-201ENST00000298281 FAM19A4Q96LR4 140 aa8.55□□□□□ -1.04
PCF11-201ENST00000298281 AMELXQ99217 191 aa8.54□□□□□ -1.04
PCF11-201ENST00000298281 CSNK1G2-AS1Q8NCQ2 148 aa8.54□□□□□ -1.04
PCF11-201ENST00000298281 IGLV4-60A0A075B6I1 120 aa8.54□□□□□ -1.04
PCF11-201ENST00000298281 CDIP1Q9H305 208 aa8.53□□□□□ -1.04
PCF11-201ENST00000298281 EPM2AB3EWF7 344 aa8.53□□□□□ -1.04
PCF11-201ENST00000298281 GAS8-AS1O95177 125 aa8.52□□□□□ -1.05
PCF11-201ENST00000298281 Q6ZRU5 148 aa8.51□□□□□ -1.05
PCF11-201ENST00000298281 LINC01600Q96MT4 127 aa8.51□□□□□ -1.05
PCF11-201ENST00000298281 USP9YO00507 2555 aaPredicted RBP8.51□□□□□ -1.05
PCF11-201ENST00000298281 ZNF462Q96JM2 2506 aa8.5□□□□□ -1.05
PCF11-201ENST00000298281 AVPP01185 164 aa8.5□□□□□ -1.05
PCF11-201ENST00000298281 RPL37AP61513 92 aaKnown RBP8.5□□□□□ -1.05
PCF11-201ENST00000298281 LYPD5Q6UWN5 251 aa8.5□□□□□ -1.05
PCF11-201ENST00000298281 IGLV6-57P01721 117 aa8.49□□□□□ -1.05
PCF11-201ENST00000298281 SRCAPQ6ZRS2 3230 aa8.47□□□□□ -1.05
PCF11-201ENST00000298281 Q6ZRP5 223 aa8.47□□□□□ -1.05
PCF11-201ENST00000298281 RBM12B-AS1Q9P1G2 102 aa8.47□□□□□ -1.05
PCF11-201ENST00000298281 WDR87Q6ZQQ6 2873 aa8.46□□□□□ -1.05
PCF11-201ENST00000298281 FHL3Q13643 280 aa8.46□□□□□ -1.06
PCF11-201ENST00000298281 MUC22E2RYF6 1773 aaPredicted RBP8.46□□□□□ -1.06
PCF11-201ENST00000298281 PHF5AQ7RTV0 110 aaKnown RBP8.45□□□□□ -1.06
PCF11-201ENST00000298281 C9orf92A6NGG3 77 aa8.45□□□□□ -1.06
PCF11-201ENST00000298281 SPATA3Q8NHX4 192 aa8.45□□□□□ -1.06
PCF11-201ENST00000298281 RTL8CO15255 209 aa8.45□□□□□ -1.06
PCF11-201ENST00000298281 ANKRD11Q6UB99 2663 aaPredicted RBP8.45□□□□□ -1.06
PCF11-201ENST00000298281 A0A0D9SG42 100 aa8.44□□□□□ -1.06
PCF11-201ENST00000298281 ADAMTSL4-AS1Q5T5F5 129 aa8.44□□□□□ -1.06
PCF11-201ENST00000298281 A0A1B0GW54 56 aa8.44□□□□□ -1.06
PCF11-201ENST00000298281 TSPEAR-AS2P59090 65 aa8.43□□□□□ -1.06
PCF11-201ENST00000298281 CHD8Q9HCK8 2581 aa8.43□□□□□ -1.06
PCF11-201ENST00000298281 IGLV5-37A0A075B6J1 123 aa8.43□□□□□ -1.06
PCF11-201ENST00000298281 URB1-AS1Q96HZ7 61 aa8.43□□□□□ -1.06
PCF11-201ENST00000298281 M0R2T5 61 aa8.42□□□□□ -1.06
PCF11-201ENST00000298281 CDSNQ15517 529 aa8.42□□□□□ -1.06
PCF11-201ENST00000298281 UTRNP46939 3433 aa8.41□□□□□ -1.06
PCF11-201ENST00000298281 LINC00310P59036 64 aa8.41□□□□□ -1.06
PCF11-201ENST00000298281 Q8NBF4 154 aa8.4□□□□□ -1.06
PCF11-201ENST00000298281 PRO0628Q9UI54 55 aa8.4□□□□□ -1.06
PCF11-201ENST00000298281 ZNF575Q86XF7 245 aa8.39□□□□□ -1.07
PCF11-201ENST00000298281 LINC00846Q9NV44 126 aa8.39□□□□□ -1.07
PCF11-201ENST00000298281 UQCR11O14957 56 aa8.39□□□□□ -1.07
PCF11-201ENST00000298281 KIF25-AS1Q9Y6Z4 181 aa8.38□□□□□ -1.07
PCF11-201ENST00000298281 LINC00167Q96N53 147 aa8.38□□□□□ -1.07
PCF11-201ENST00000298281 C4orf26Q17RF5 130 aa8.38□□□□□ -1.07
PCF11-201ENST00000298281 LINC00483Q53H64 154 aa8.38□□□□□ -1.07
PCF11-201ENST00000298281 KRTAP10-9P60411 292 aa8.38□□□□□ -1.07
PCF11-201ENST00000298281 BCE1O60756 84 aa8.37□□□□□ -1.07
PCF11-201ENST00000298281 MTORP42345 2549 aa8.37□□□□□ -1.07
PCF11-201ENST00000298281 C10orf142B7Z368 130 aa8.36□□□□□ -1.07
PCF11-201ENST00000298281 MIR22HGQ0VDD5 57 aa8.36□□□□□ -1.07
PCF11-201ENST00000298281 Q6ZQT0 140 aa8.36□□□□□ -1.07
PCF11-201ENST00000298281 LINC00476Q8WZB0 136 aa8.36□□□□□ -1.07
PCF11-201ENST00000298281 Q6ZSN1 163 aa8.35□□□□□ -1.07
PCF11-201ENST00000298281 IGLV5-39A0A0G2JS06 123 aa8.35□□□□□ -1.07
PCF11-201ENST00000298281 A0A096LNJ9 63 aa8.34□□□□□ -1.07
PCF11-201ENST00000298281 H3BNG1 76 aa8.34□□□□□ -1.07
PCF11-201ENST00000298281 H3BPC8 53 aa8.33□□□□□ -1.08
PCF11-201ENST00000298281 C8orf17Q9NRJ1 99 aa8.33□□□□□ -1.08
PCF11-201ENST00000298281 OBSCN-AS1Q96MR7 158 aa8.33□□□□□ -1.08
PCF11-201ENST00000298281 K7EQZ3 153 aa8.33□□□□□ -1.08
PCF11-201ENST00000298281 SPTBN4Q9H254 2564 aa8.32□□□□□ -1.08
PCF11-201ENST00000298281 IGHV3OR16-9A0A0B4J2B5 98 aa8.32□□□□□ -1.08
PCF11-201ENST00000298281 CDC42SE1Q9NRR8 79 aa8.32□□□□□ -1.08
PCF11-201ENST00000298281 ANKRD17O75179 2603 aaKnown RBP8.32□□□□□ -1.08
PCF11-201ENST00000298281 BPTFQ12830 3046 aa8.32□□□□□ -1.08
PCF11-201ENST00000298281 FASNP49327 2511 aaKnown RBP8.32□□□□□ -1.08
PCF11-201ENST00000298281 LINC00315P59091 139 aa8.31□□□□□ -1.08
PCF11-201ENST00000298281 ERC2-IT1O76042 136 aa8.31□□□□□ -1.08
PCF11-201ENST00000298281 C11orf72Q8NBR9 251 aa8.3□□□□□ -1.08
PCF11-201ENST00000298281 CEP295Q9C0D2 2601 aa8.3□□□□□ -1.08
PCF11-201ENST00000298281 LINC00304Q8N9R0 145 aa8.3□□□□□ -1.08
PCF11-201ENST00000298281 LINC01546A6NGU7 62 aa8.29□□□□□ -1.08
PCF11-201ENST00000298281 CAMK2N1Q7Z7J9 78 aa8.29□□□□□ -1.08
PCF11-201ENST00000298281 A0A1W2PPR1 153 aa8.29□□□□□ -1.08
PCF11-201ENST00000298281 LOC101927531A0A1B0GV80 90 aa8.29□□□□□ -1.08
PCF11-201ENST00000298281 IGLV5-48A0A075B6I7 105 aa8.29□□□□□ -1.08
PCF11-201ENST00000298281 ST20-AS1Q8NBB2 130 aa8.28□□□□□ -1.08
PCF11-201ENST00000298281 DSCR10P59022 87 aa8.28□□□□□ -1.08
PCF11-201ENST00000298281 COA5Q86WW8 74 aa8.27□□□□□ -1.09
PCF11-201ENST00000298281 SMR3BP02814 79 aaPredicted RBP8.25□□□□□ -1.09
PCF11-201ENST00000298281 WWC2-AS2Q96NR7 200 aa8.25□□□□□ -1.09
PCF11-201ENST00000298281 PLA2G2DQ9UNK4 145 aa8.25□□□□□ -1.09
PCF11-201ENST00000298281 POLQO75417 2590 aa8.25□□□□□ -1.09
PCF11-201ENST00000298281 IGLV5-45A0A087WSX0 123 aa8.25□□□□□ -1.09
PCF11-201ENST00000298281 NBDYA0A0U1RRE5 68 aa8.25□□□□□ -1.09
PCF11-201ENST00000298281 MRPL34Q9BQ48 92 aaKnown RBP8.25□□□□□ -1.09
PCF11-201ENST00000298281 ELOF1P60002 83 aaKnown RBP8.23□□□□□ -1.09
PCF11-201ENST00000298281 A8MWP4 228 aa8.21□□□□□ -1.09
PCF11-201ENST00000298281 LOC110117498A0A087WWA1 95 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms