RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 Q9HAA7 133 aa13.9□□□□□ -0.18
YBX3-202ENST00000279550 GVQW2A0A096LPI5 108 aaPredicted RBP13.89□□□□□ -0.19
YBX3-202ENST00000279550 ANKRD29Q8N6D5 301 aa13.88□□□□□ -0.19
YBX3-202ENST00000279550 TRBV10-2A0A0K0K1G8 114 aa13.87□□□□□ -0.19
YBX3-202ENST00000279550 CARD19Q96LW7 228 aa13.87□□□□□ -0.19
YBX3-202ENST00000279550 M0QXV9 152 aa13.87□□□□□ -0.19
YBX3-202ENST00000279550 TEN1Q86WV5 123 aa13.87□□□□□ -0.19
YBX3-202ENST00000279550 OR13C6PQ8NH95 151 aa13.87□□□□□ -0.19
YBX3-202ENST00000279550 ZNF561-AS1K7EIQ3 104 aa13.86□□□□□ -0.19
YBX3-202ENST00000279550 FAM218AQ96MZ4 157 aa13.86□□□□□ -0.19
YBX3-202ENST00000279550 NDUFC2O95298 119 aa13.84□□□□□ -0.19
YBX3-202ENST00000279550 LINC01600Q96MT4 127 aa13.84□□□□□ -0.19
YBX3-202ENST00000279550 CAMK2N2Q96S95 79 aa13.84□□□□□ -0.19
YBX3-202ENST00000279550 CASC10Q5T4H9 136 aa13.84□□□□□ -0.19
YBX3-202ENST00000279550 Q6ZRU5 148 aa13.83□□□□□ -0.2
YBX3-202ENST00000279550 TENM2Q9NT68 2774 aa13.83□□□□□ -0.2
YBX3-202ENST00000279550 VPS25Q9BRG1 176 aa13.82□□□□□ -0.2
YBX3-202ENST00000279550 NCR3O14931 201 aa13.81□□□□□ -0.2
YBX3-202ENST00000279550 C2orf48Q96LS8 159 aa13.81□□□□□ -0.2
YBX3-202ENST00000279550 PPDPFLQ8WWR9 84 aa13.81□□□□□ -0.2
YBX3-202ENST00000279550 C3orf84H3BNL1 204 aa13.8□□□□□ -0.2
YBX3-202ENST00000279550 DNAH1Q9P2D7 4330 aa13.79□□□□□ -0.2
YBX3-202ENST00000279550 H3BT86 120 aa13.78□□□□□ -0.2
YBX3-202ENST00000279550 KRTAP1-5Q9BYS1 174 aa13.78□□□□□ -0.2
YBX3-202ENST00000279550 TRACP01848 142 aa13.78□□□□□ -0.2
YBX3-202ENST00000279550 XAGE1AQ9HD64 81 aa13.78□□□□□ -0.2
YBX3-202ENST00000279550 A0A087WYN8 130 aa13.76□□□□□ -0.21
YBX3-202ENST00000279550 J3QR89 54 aa13.76□□□□□ -0.21
YBX3-202ENST00000279550 TTC32Q5I0X7 151 aa13.73□□□□□ -0.21
YBX3-202ENST00000279550 NBDYA0A0U1RRE5 68 aa13.73□□□□□ -0.21
YBX3-202ENST00000279550 H0YGX0 51 aa13.73□□□□□ -0.21
YBX3-202ENST00000279550 SYCNQ0VAF6 134 aa13.73□□□□□ -0.21
YBX3-202ENST00000279550 TMEM126AQ9H061 195 aa13.73□□□□□ -0.21
YBX3-202ENST00000279550 TEX49A0A1B0GTD5 131 aa13.72□□□□□ -0.21
YBX3-202ENST00000279550 USP17L23D6RBM5 183 aa13.72□□□□□ -0.21
YBX3-202ENST00000279550 F8WDY8 70 aa13.72□□□□□ -0.21
YBX3-202ENST00000279550 RPL18AQ02543 176 aaKnown RBP13.72□□□□□ -0.21
YBX3-202ENST00000279550 RMI2Q96E14 147 aa13.72□□□□□ -0.21
YBX3-202ENST00000279550 VPS13DQ5THJ4 4388 aa13.7□□□□□ -0.22
YBX3-202ENST00000279550 NDUFC2-KCTD14E9PQ53 114 aa13.7□□□□□ -0.22
YBX3-202ENST00000279550 SLPIP03973 132 aa13.7□□□□□ -0.22
YBX3-202ENST00000279550 CBY1Q9Y3M2 126 aa13.7□□□□□ -0.22
YBX3-202ENST00000279550 C22orf24Q9Y442 160 aa13.7□□□□□ -0.22
YBX3-202ENST00000279550 S100A7L2Q5SY68 101 aa13.69□□□□□ -0.22
YBX3-202ENST00000279550 LY6G6CO95867 125 aa13.68□□□□□ -0.22
YBX3-202ENST00000279550 BAALC-AS2P0C853 105 aa13.68□□□□□ -0.22
YBX3-202ENST00000279550 GAGE2EQ4V326 116 aa13.68□□□□□ -0.22
YBX3-202ENST00000279550 LINC00476Q8WZB0 136 aa13.68□□□□□ -0.22
YBX3-202ENST00000279550 GAGE2DQ9UEU5 116 aa13.68□□□□□ -0.22
YBX3-202ENST00000279550 LECT2O14960 151 aa13.67□□□□□ -0.22
YBX3-202ENST00000279550 IGLV6-57P01721 117 aa13.67□□□□□ -0.22
YBX3-202ENST00000279550 VPREB1P12018 145 aa13.67□□□□□ -0.22
YBX3-202ENST00000279550 Q6ZRP5 223 aa13.67□□□□□ -0.22
YBX3-202ENST00000279550 C6orf99Q4VX62 202 aa13.65□□□□□ -0.22
YBX3-202ENST00000279550 M0R2N4 97 aa13.64□□□□□ -0.23
YBX3-202ENST00000279550 TRBV10-3A0A0K0K1G6 114 aa13.64□□□□□ -0.23
YBX3-202ENST00000279550 C9orf129Q5T035 196 aaKnown RBP13.63□□□□□ -0.23
YBX3-202ENST00000279550 CDIP1Q9H305 208 aa13.63□□□□□ -0.23
YBX3-202ENST00000279550 Q6ZR54 194 aa13.61□□□□□ -0.23
YBX3-202ENST00000279550 KMT2AQ03164 3969 aa13.61□□□□□ -0.23
YBX3-202ENST00000279550 DNAL4O96015 105 aa13.61□□□□□ -0.23
YBX3-202ENST00000279550 PSCAO43653 123 aa13.59□□□□□ -0.23
YBX3-202ENST00000279550 TLX1NBP0CAT3 122 aa13.59□□□□□ -0.23
YBX3-202ENST00000279550 LINC00167Q96N53 147 aa13.59□□□□□ -0.23
YBX3-202ENST00000279550 M0R378 163 aa13.58□□□□□ -0.24
YBX3-202ENST00000279550 Q6ZRN7 208 aaPredicted RBP13.57□□□□□ -0.24
YBX3-202ENST00000279550 Q8N814 137 aa13.57□□□□□ -0.24
YBX3-202ENST00000279550 TRAV23DV6A0A075B6W5 121 aa13.56□□□□□ -0.24
YBX3-202ENST00000279550 DNAH10Q8IVF4 4471 aa13.56□□□□□ -0.24
YBX3-202ENST00000279550 SERTAD4-AS1Q5TG53 156 aa13.56□□□□□ -0.24
YBX3-202ENST00000279550 LINC00575Q6W349 94 aa13.56□□□□□ -0.24
YBX3-202ENST00000279550 A0A1B0GX51 115 aa13.55□□□□□ -0.24
YBX3-202ENST00000279550 ALMS1Q8TCU4 4167 aa13.53□□□□□ -0.24
YBX3-202ENST00000279550 DIRC1Q969H9 104 aa13.52□□□□□ -0.25
YBX3-202ENST00000279550 ORMDL1Q9P0S3 153 aa13.52□□□□□ -0.25
YBX3-202ENST00000279550 SIGMAR1Q99720 223 aa13.51□□□□□ -0.25
YBX3-202ENST00000279550 ZNF73O43830 326 aaPredicted RBP13.5□□□□□ -0.25
YBX3-202ENST00000279550 FAM168BA1KXE4 195 aa13.5□□□□□ -0.25
YBX3-202ENST00000279550 GAGE2BQ13066 116 aa13.49□□□□□ -0.25
YBX3-202ENST00000279550 C1orf134Q5TEV5 83 aa13.49□□□□□ -0.25
YBX3-202ENST00000279550 XGP55808 180 aa13.48□□□□□ -0.25
YBX3-202ENST00000279550 KRTAP7-1Q8IUC3 87 aa13.48□□□□□ -0.25
YBX3-202ENST00000279550 C7orf33Q8WU49 177 aa13.48□□□□□ -0.25
YBX3-202ENST00000279550 PLA2G2DQ9UNK4 145 aa13.48□□□□□ -0.25
YBX3-202ENST00000279550 hADV29S1A0JD25 119 aa13.47□□□□□ -0.25
YBX3-202ENST00000279550 LRCOL1A6NCL2 159 aa13.47□□□□□ -0.25
YBX3-202ENST00000279550 COX7BP24311 80 aa13.47□□□□□ -0.25
YBX3-202ENST00000279550 NKAPP1Q8N9T2 125 aa13.47□□□□□ -0.25
YBX3-202ENST00000279550 OBSCN-AS1Q96MR7 158 aa13.47□□□□□ -0.25
YBX3-202ENST00000279550 DNAH6Q9C0G6 4158 aa13.46□□□□□ -0.25
YBX3-202ENST00000279550 LOC107984640A0A0U1RRK4 108 aa13.46□□□□□ -0.25
YBX3-202ENST00000279550 MT-ATP8P03928 68 aa13.45□□□□□ -0.26
YBX3-202ENST00000279550 ELOF1P60002 83 aaKnown RBP13.45□□□□□ -0.26
YBX3-202ENST00000279550 C14orf177Q52M58 125 aa13.45□□□□□ -0.26
YBX3-202ENST00000279550 IGLV5-37A0A075B6J1 123 aa13.44□□□□□ -0.26
YBX3-202ENST00000279550 TRBV7-6A0A0J9YX20 115 aa13.43□□□□□ -0.26
YBX3-202ENST00000279550 CNBPP62633 177 aaKnown RBP13.43□□□□□ -0.26
YBX3-202ENST00000279550 LCE6AA0A183 80 aa13.42□□□□□ -0.26
YBX3-202ENST00000279550 A0A1B0GV72 72 aa13.42□□□□□ -0.26
YBX3-202ENST00000279550 FAM240AA0A1B0GVK7 77 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms