RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 TMEM170BQ5T4T1 132 aa7.43□□□□□ -1.22
CD44-203ENST00000278386 SLC7A5P1Q8MH63 180 aa7.43□□□□□ -1.22
CD44-203ENST00000278386 CBLN2Q8IUK8 224 aa7.42□□□□□ -1.22
CD44-203ENST00000278386 C11orf86A6NJI1 115 aa7.41□□□□□ -1.22
CD44-203ENST00000278386 M0R378 163 aa7.41□□□□□ -1.22
CD44-203ENST00000278386 LINC00614P0C842 121 aa7.41□□□□□ -1.22
CD44-203ENST00000278386 SFTA2Q6UW10 78 aa7.41□□□□□ -1.22
CD44-203ENST00000278386 HIGD2AQ9BW72 106 aa7.41□□□□□ -1.22
CD44-203ENST00000278386 BAGE3Q86Y29 109 aa7.4□□□□□ -1.22
CD44-203ENST00000278386 Q8NDZ9 215 aa7.4□□□□□ -1.22
CD44-203ENST00000278386 CDIP1Q9H305 208 aa7.4□□□□□ -1.22
CD44-203ENST00000278386 MUC17Q685J3 4493 aa7.4□□□□□ -1.22
CD44-203ENST00000278386 LINC00158P58513 81 aa7.39□□□□□ -1.23
CD44-203ENST00000278386 C3orf22Q8N5N4 141 aa7.39□□□□□ -1.23
CD44-203ENST00000278386 A0A0U1RRA0 63 aa7.38□□□□□ -1.23
CD44-203ENST00000278386 PLEKHB2Q96CS7 222 aa7.38□□□□□ -1.23
CD44-203ENST00000278386 CHTOPQ9Y3Y2 248 aaKnown RBP7.38□□□□□ -1.23
CD44-203ENST00000278386 FAT4Q6V0I7 4981 aa7.37□□□□□ -1.23
CD44-203ENST00000278386 IGLV7-46A0A075B6I9 117 aa7.37□□□□□ -1.23
CD44-203ENST00000278386 TPRXLQ17RH7 258 aa7.37□□□□□ -1.23
CD44-203ENST00000278386 ATP6V1G1O75348 118 aa7.36□□□□□ -1.23
CD44-203ENST00000278386 MEIG1Q5JSS6 88 aa7.35□□□□□ -1.23
CD44-203ENST00000278386 ZNF706Q9Y5V0 76 aaPredicted RBP7.35□□□□□ -1.23
CD44-203ENST00000278386 NCR3O14931 201 aa7.34□□□□□ -1.23
CD44-203ENST00000278386 CTAG1AP78358 180 aa7.34□□□□□ -1.23
CD44-203ENST00000278386 SPRR4Q96PI1 79 aa7.34□□□□□ -1.23
CD44-203ENST00000278386 TMEM223A0PJW6 202 aa7.33□□□□□ -1.24
CD44-203ENST00000278386 PRYO14603 147 aa7.33□□□□□ -1.24
CD44-203ENST00000278386 SMIM13P0DJ93 91 aa7.33□□□□□ -1.24
CD44-203ENST00000278386 BOD1L2Q8IYS8 172 aa7.33□□□□□ -1.24
CD44-203ENST00000278386 PPDPFQ9H3Y8 114 aa7.33□□□□□ -1.24
CD44-203ENST00000278386 TRGC2P03986 189 aa7.32□□□□□ -1.24
CD44-203ENST00000278386 LINC00310P59036 64 aa7.32□□□□□ -1.24
CD44-203ENST00000278386 C4orf48Q5BLP8 95 aa7.32□□□□□ -1.24
CD44-203ENST00000278386 TRAV12-1A0A0B4J245 112 aa7.31□□□□□ -1.24
CD44-203ENST00000278386 ETDCA0A1B0GVM5 59 aa7.31□□□□□ -1.24
CD44-203ENST00000278386 COLCA2A8K830 154 aa7.31□□□□□ -1.24
CD44-203ENST00000278386 SPAG11AQ6PDA7 123 aa7.31□□□□□ -1.24
CD44-203ENST00000278386 MIR7-3HGQ8N6C7 128 aa7.31□□□□□ -1.24
CD44-203ENST00000278386 IFI27L1Q96BM0 104 aa7.31□□□□□ -1.24
CD44-203ENST00000278386 CHCHD1Q96BP2 118 aaKnown RBP7.31□□□□□ -1.24
CD44-203ENST00000278386 FAM19A2Q8N3H0 131 aa7.3□□□□□ -1.24
CD44-203ENST00000278386 KRTAP9-2Q9BYQ4 174 aa7.3□□□□□ -1.24
CD44-203ENST00000278386 HERV-K104P63124 156 aa7.29□□□□□ -1.24
CD44-203ENST00000278386 LCE2AQ5TA79 106 aaPredicted RBP7.29□□□□□ -1.24
CD44-203ENST00000278386 DAND5Q8N907 189 aa7.29□□□□□ -1.24
CD44-203ENST00000278386 Q8NBF4 154 aa7.29□□□□□ -1.24
CD44-203ENST00000278386 H0Y8G0 127 aa7.28□□□□□ -1.24
CD44-203ENST00000278386 S100A12P80511 92 aa7.28□□□□□ -1.24
CD44-203ENST00000278386 LINC00337Q8N6G1 96 aa7.28□□□□□ -1.24
CD44-203ENST00000278386 NDUFA12Q9UI09 145 aa7.28□□□□□ -1.24
CD44-203ENST00000278386 TRBV10-3A0A0K0K1G6 114 aa7.27□□□□□ -1.25
CD44-203ENST00000278386 FP248Q71RG6 208 aaPredicted RBP7.27□□□□□ -1.25
CD44-203ENST00000278386 SMCR5Q8TEV8 140 aa7.27□□□□□ -1.25
CD44-203ENST00000278386 MAP1LC3CQ9BXW4 147 aa7.27□□□□□ -1.25
CD44-203ENST00000278386 MYMXA0A1B0GTQ4 84 aa7.26□□□□□ -1.25
CD44-203ENST00000278386 LINC00587B1AMM8 73 aa7.26□□□□□ -1.25
CD44-203ENST00000278386 HSBP1O75506 76 aa7.26□□□□□ -1.25
CD44-203ENST00000278386 SERF1AO75920 110 aa7.26□□□□□ -1.25
CD44-203ENST00000278386 SPRR1AP35321 89 aa7.26□□□□□ -1.25
CD44-203ENST00000278386 KCNQ1DNQ9H478 68 aa7.26□□□□□ -1.25
CD44-203ENST00000278386 GAGE2AQ6NT46 116 aa7.25□□□□□ -1.25
CD44-203ENST00000278386 MOBPQ13875 183 aa7.24□□□□□ -1.25
CD44-203ENST00000278386 IGLV9-49A0A0B4J1Y8 123 aa7.23□□□□□ -1.25
CD44-203ENST00000278386 KRTAP4-16G5E9R7 235 aaPredicted RBP7.23□□□□□ -1.25
CD44-203ENST00000278386 SPINK1P00995 79 aa7.23□□□□□ -1.25
CD44-203ENST00000278386 DDTP30046 118 aa7.22□□□□□ -1.25
CD44-203ENST00000278386 TSPEAR-AS2P59090 65 aa7.22□□□□□ -1.25
CD44-203ENST00000278386 KRTAP13-3Q3SY46 172 aa7.22□□□□□ -1.25
CD44-203ENST00000278386 LINC00483Q53H64 154 aa7.22□□□□□ -1.25
CD44-203ENST00000278386 MIEN1Q9BRT3 115 aa7.22□□□□□ -1.25
CD44-203ENST00000278386 B5MCH6 92 aa7.21□□□□□ -1.26
CD44-203ENST00000278386 LEPROTL1O95214 131 aa7.21□□□□□ -1.26
CD44-203ENST00000278386 LEPROTO15243 131 aa7.2□□□□□ -1.26
CD44-203ENST00000278386 FABP4P15090 132 aa7.2□□□□□ -1.26
CD44-203ENST00000278386 HERVK_113P61574 105 aa7.2□□□□□ -1.26
CD44-203ENST00000278386 SPANXB1Q9NS25 103 aaPredicted RBP7.2□□□□□ -1.26
CD44-203ENST00000278386 TRBV10-2A0A0K0K1G8 114 aa7.19□□□□□ -1.26
CD44-203ENST00000278386 ERC2-IT1O76042 136 aa7.19□□□□□ -1.26
CD44-203ENST00000278386 PLNP26678 52 aa7.19□□□□□ -1.26
CD44-203ENST00000278386 S100A7L2Q5SY68 101 aa7.19□□□□□ -1.26
CD44-203ENST00000278386 PMCHL2Q9BQD1 86 aa7.19□□□□□ -1.26
CD44-203ENST00000278386 J3QQQ9 107 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 HIST1H2BKO60814 126 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 HIST1H2BJP06899 126 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 LGALS3P17931 250 aaKnown RBP7.18□□□□□ -1.26
CD44-203ENST00000278386 HIST1H2BOP23527 126 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 HIST1H2BBP33778 126 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 HIST1H2BDP58876 126 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 HIST1H2BCP62807 126 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 HIST2H2BEQ16778 126 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.18□□□□□ -1.26
CD44-203ENST00000278386 C9orf153Q5TBE3 101 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 Q6ZRX8 168 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 HIST1H2BHQ93079 126 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 HIST1H2BNQ99877 126 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 HIST1H2BMQ99879 126 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 Q9BRP9 147 aa7.18□□□□□ -1.26
CD44-203ENST00000278386 ASB16-AS1Q495Z4 193 aa7.17□□□□□ -1.26
CD44-203ENST00000278386 TRAV23DV6A0A075B6W5 121 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms