RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 NDUFC2-KCTD14E9PQ53 114 aa7.87□□□□□ -1.15
VPS4A-201ENST00000254950 C6orf99Q4VX62 202 aa7.87□□□□□ -1.15
VPS4A-201ENST00000254950 GAGE2AQ6NT46 116 aa7.87□□□□□ -1.15
VPS4A-201ENST00000254950 Q6ZRU5 148 aa7.87□□□□□ -1.15
VPS4A-201ENST00000254950 PRR34Q9NV39 138 aa7.86□□□□□ -1.15
VPS4A-201ENST00000254950 TEN1Q86WV5 123 aa7.85□□□□□ -1.15
VPS4A-201ENST00000254950 DEFB105AQ8NG35 78 aa7.85□□□□□ -1.15
VPS4A-201ENST00000254950 TRAV23DV6A0A075B6W5 121 aa7.85□□□□□ -1.15
VPS4A-201ENST00000254950 H3BQ85 93 aa7.85□□□□□ -1.15
VPS4A-201ENST00000254950 UBE2AP49459 152 aa7.85□□□□□ -1.15
VPS4A-201ENST00000254950 SMIM11BQ8TCY0 68 aa7.85□□□□□ -1.15
VPS4A-201ENST00000254950 WWC2-AS2Q96NR7 200 aa7.84□□□□□ -1.15
VPS4A-201ENST00000254950 C1orf134Q5TEV5 83 aa7.84□□□□□ -1.15
VPS4A-201ENST00000254950 NDUFC2O95298 119 aa7.84□□□□□ -1.15
VPS4A-201ENST00000254950 DSCR8Q96T75 97 aa7.84□□□□□ -1.15
VPS4A-201ENST00000254950 TRACP01848 142 aa7.84□□□□□ -1.16
VPS4A-201ENST00000254950 hADV29S1A0JD25 119 aa7.83□□□□□ -1.16
VPS4A-201ENST00000254950 NBDYA0A0U1RRE5 68 aa7.83□□□□□ -1.16
VPS4A-201ENST00000254950 LINC00474Q9P2X8 69 aa7.83□□□□□ -1.16
VPS4A-201ENST00000254950 IGKV2-28A0A075B6P5 120 aa7.82□□□□□ -1.16
VPS4A-201ENST00000254950 IGKV2D-28P01615 120 aa7.82□□□□□ -1.16
VPS4A-201ENST00000254950 BSNQ9UPA5 3926 aa7.82□□□□□ -1.16
VPS4A-201ENST00000254950 PRR3P79522 188 aaKnown RBP7.82□□□□□ -1.16
VPS4A-201ENST00000254950 C10orf25Q5T742 122 aa7.81□□□□□ -1.16
VPS4A-201ENST00000254950 TMEM256-PLSCR3K7ERE1 68 aa7.81□□□□□ -1.16
VPS4A-201ENST00000254950 C6orf48Q9UBA6 75 aa7.81□□□□□ -1.16
VPS4A-201ENST00000254950 LST1O00453 97 aa7.81□□□□□ -1.16
VPS4A-201ENST00000254950 SCGB1A1P11684 91 aa7.8□□□□□ -1.16
VPS4A-201ENST00000254950 RPL28P46779 137 aaKnown RBP7.8□□□□□ -1.16
VPS4A-201ENST00000254950 SIGMAR1Q99720 223 aa7.8□□□□□ -1.16
VPS4A-201ENST00000254950 HIGD2AQ9BW72 106 aa7.8□□□□□ -1.16
VPS4A-201ENST00000254950 JMJD7-PLA2G4BH0Y9G9 81 aa7.8□□□□□ -1.16
VPS4A-201ENST00000254950 ZNF73O43830 326 aaPredicted RBP7.8□□□□□ -1.16
VPS4A-201ENST00000254950 TRBV10-3A0A0K0K1G6 114 aa7.79□□□□□ -1.16
VPS4A-201ENST00000254950 FAM19A1Q7Z5A9 133 aa7.79□□□□□ -1.16
VPS4A-201ENST00000254950 GVQW2A0A096LPI5 108 aaPredicted RBP7.79□□□□□ -1.16
VPS4A-201ENST00000254950 SOSTDC1Q6X4U4 206 aa7.78□□□□□ -1.16
VPS4A-201ENST00000254950 LINC00337Q8N6G1 96 aa7.78□□□□□ -1.16
VPS4A-201ENST00000254950 RPL37AP8A6NKH3 93 aa7.78□□□□□ -1.16
VPS4A-201ENST00000254950 UPK3BQ9BT76 320 aa7.77□□□□□ -1.17
VPS4A-201ENST00000254950 LITAFQ99732 161 aa7.77□□□□□ -1.17
VPS4A-201ENST00000254950 M0QXV9 152 aa7.77□□□□□ -1.17
VPS4A-201ENST00000254950 SLPIP03973 132 aa7.77□□□□□ -1.17
VPS4A-201ENST00000254950 UBL5Q9BZL1 73 aa7.77□□□□□ -1.17
VPS4A-201ENST00000254950 APLNQ9ULZ1 77 aa7.77□□□□□ -1.17
VPS4A-201ENST00000254950 A0A1B0GX51 115 aa7.76□□□□□ -1.17
VPS4A-201ENST00000254950 IGLV5-52A0A0A0MRZ9 124 aa7.76□□□□□ -1.17
VPS4A-201ENST00000254950 FAM104AQ969W3 186 aa7.76□□□□□ -1.17
VPS4A-201ENST00000254950 KIAA0087Q14695 138 aa7.76□□□□□ -1.17
VPS4A-201ENST00000254950 RBM3P98179 157 aaKnown RBP7.75□□□□□ -1.17
VPS4A-201ENST00000254950 Q6ZQY7 126 aa7.75□□□□□ -1.17
VPS4A-201ENST00000254950 OTOGQ6ZRI0 2925 aa7.75□□□□□ -1.17
VPS4A-201ENST00000254950 ACYP1P07311 99 aa7.74□□□□□ -1.17
VPS4A-201ENST00000254950 DHRS4-AS1Q9P1J3 65 aa7.74□□□□□ -1.17
VPS4A-201ENST00000254950 FUSP35637 526 aaKnown RBP eCLIP7.73□□□□□ -1.17
VPS4A-201ENST00000254950 C7orf33Q8WU49 177 aa7.73□□□□□ -1.17
VPS4A-201ENST00000254950 MRPL55Q7Z7F7 128 aaKnown RBP7.72□□□□□ -1.17
VPS4A-201ENST00000254950 PDE6GP18545 87 aa7.72□□□□□ -1.17
VPS4A-201ENST00000254950 C15orf56Q8N910 161 aa7.71□□□□□ -1.17
VPS4A-201ENST00000254950 HAMPP81172 84 aa7.71□□□□□ -1.17
VPS4A-201ENST00000254950 C3orf84H3BNL1 204 aa7.71□□□□□ -1.18
VPS4A-201ENST00000254950 HIST1H4AP62805 103 aaKnown RBP7.71□□□□□ -1.18
VPS4A-201ENST00000254950 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.71□□□□□ -1.18
VPS4A-201ENST00000254950 TEX49A0A1B0GTD5 131 aa7.71□□□□□ -1.18
VPS4A-201ENST00000254950 SVIPQ8NHG7 77 aa7.71□□□□□ -1.18
VPS4A-201ENST00000254950 C14orf132Q9NPU4 83 aa7.71□□□□□ -1.18
VPS4A-201ENST00000254950 PPDPFQ9H3Y8 114 aa7.7□□□□□ -1.18
VPS4A-201ENST00000254950 C22orf24Q9Y442 160 aa7.7□□□□□ -1.18
VPS4A-201ENST00000254950 PRYO14603 147 aa7.69□□□□□ -1.18
VPS4A-201ENST00000254950 REG3GQ6UW15 175 aa7.69□□□□□ -1.18
VPS4A-201ENST00000254950 Q8N814 137 aa7.69□□□□□ -1.18
VPS4A-201ENST00000254950 CDK2AP2O75956 126 aa7.68□□□□□ -1.18
VPS4A-201ENST00000254950 A0A087WYN8 130 aa7.67□□□□□ -1.18
VPS4A-201ENST00000254950 EIF4EBP3O60516 100 aaPredicted RBP7.67□□□□□ -1.18
VPS4A-201ENST00000254950 Q6ZRP5 223 aa7.67□□□□□ -1.18
VPS4A-201ENST00000254950 C16orf90A8MZG2 172 aa7.65□□□□□ -1.18
VPS4A-201ENST00000254950 LINC00575Q6W349 94 aa7.65□□□□□ -1.18
VPS4A-201ENST00000254950 LINC00167Q96N53 147 aa7.65□□□□□ -1.18
VPS4A-201ENST00000254950 C9orf153Q5TBE3 101 aa7.64□□□□□ -1.19
VPS4A-201ENST00000254950 VPREB1P12018 145 aa7.64□□□□□ -1.19
VPS4A-201ENST00000254950 CASC10Q5T4H9 136 aa7.64□□□□□ -1.19
VPS4A-201ENST00000254950 NREPQ16612 68 aa7.63□□□□□ -1.19
VPS4A-201ENST00000254950 RTL8CO15255 209 aa7.63□□□□□ -1.19
VPS4A-201ENST00000254950 ZNF706Q9Y5V0 76 aaPredicted RBP7.62□□□□□ -1.19
VPS4A-201ENST00000254950 KRTAP21-3Q3LHN1 58 aa7.62□□□□□ -1.19
VPS4A-201ENST00000254950 A0A096LNI7 61 aa7.62□□□□□ -1.19
VPS4A-201ENST00000254950 NDUFV3P56181 108 aaKnown RBP7.62□□□□□ -1.19
VPS4A-201ENST00000254950 LRCOL1A6NCL2 159 aa7.6□□□□□ -1.19
VPS4A-201ENST00000254950 TENM1Q9UKZ4 2725 aa7.6□□□□□ -1.19
VPS4A-201ENST00000254950 TLX1NBP0CAT3 122 aa7.6□□□□□ -1.19
VPS4A-201ENST00000254950 CHTF8P0CG12 524 aa7.6□□□□□ -1.19
VPS4A-201ENST00000254950 A0A087WTM6 91 aa7.59□□□□□ -1.19
VPS4A-201ENST00000254950 TRBV7-6A0A0J9YX20 115 aa7.59□□□□□ -1.19
VPS4A-201ENST00000254950 STAB2Q8WWQ8 2551 aa7.59□□□□□ -1.19
VPS4A-201ENST00000254950 CCKP06307 115 aa7.59□□□□□ -1.19
VPS4A-201ENST00000254950 ANAPC13Q9BS18 74 aa7.59□□□□□ -1.19
VPS4A-201ENST00000254950 NBPF19A0A087WUL8 3843 aa7.59□□□□□ -1.19
VPS4A-201ENST00000254950 IGLV6-57P01721 117 aa7.59□□□□□ -1.19
VPS4A-201ENST00000254950 C9orf163Q8N9P6 203 aa7.59□□□□□ -1.19
VPS4A-201ENST00000254950 LINC00643Q86TS7 51 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms