RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 CHTF8P0CG12 524 aa12.92□□□□□ -0.34
SMARCC1-201ENST00000254480 KRTAP24-1Q3LI83 254 aa12.92□□□□□ -0.34
SMARCC1-201ENST00000254480 LINC00167Q96N53 147 aa12.92□□□□□ -0.34
SMARCC1-201ENST00000254480 CRYGAP11844 174 aa12.92□□□□□ -0.34
SMARCC1-201ENST00000254480 SMIM26A0A096LP01 95 aa12.91□□□□□ -0.34
SMARCC1-201ENST00000254480 MOBPQ13875 183 aa12.91□□□□□ -0.34
SMARCC1-201ENST00000254480 PHF5AQ7RTV0 110 aaKnown RBP12.89□□□□□ -0.35
SMARCC1-201ENST00000254480 COL27A1Q8IZC6 1860 aaPredicted RBP12.88□□□□□ -0.35
SMARCC1-201ENST00000254480 NHLRC4P0CG21 123 aaPredicted RBP12.88□□□□□ -0.35
SMARCC1-201ENST00000254480 IGLV5-39A0A0G2JS06 123 aa12.87□□□□□ -0.35
SMARCC1-201ENST00000254480 SMIM29Q86T20 159 aa12.87□□□□□ -0.35
SMARCC1-201ENST00000254480 DNAH12Q6ZR08 3092 aa12.87□□□□□ -0.35
SMARCC1-201ENST00000254480 FAM19A4Q96LR4 140 aa12.86□□□□□ -0.35
SMARCC1-201ENST00000254480 TMEM254Q8TBM7 123 aa12.86□□□□□ -0.35
SMARCC1-201ENST00000254480 ANKRD17O75179 2603 aaKnown RBP12.86□□□□□ -0.35
SMARCC1-201ENST00000254480 F8WDY8 70 aa12.85□□□□□ -0.35
SMARCC1-201ENST00000254480 PMAIP1Q13794 54 aa12.85□□□□□ -0.35
SMARCC1-201ENST00000254480 SPATA3Q8NHX4 192 aa12.85□□□□□ -0.35
SMARCC1-201ENST00000254480 C1orf195Q5TG92 126 aa12.85□□□□□ -0.35
SMARCC1-201ENST00000254480 FAM218AQ96MZ4 157 aa12.85□□□□□ -0.35
SMARCC1-201ENST00000254480 LINC01561Q8N1V8 128 aa12.84□□□□□ -0.35
SMARCC1-201ENST00000254480 C1orf64Q8NEQ6 169 aa12.83□□□□□ -0.36
SMARCC1-201ENST00000254480 LIMD2Q9BT23 127 aa12.8□□□□□ -0.36
SMARCC1-201ENST00000254480 COL4A2P08572 1712 aa12.79□□□□□ -0.36
SMARCC1-201ENST00000254480 F8P00451 2351 aa12.79□□□□□ -0.36
SMARCC1-201ENST00000254480 ST20-AS1Q8NBB2 130 aa12.79□□□□□ -0.36
SMARCC1-201ENST00000254480 C7orf65Q6ZTY9 151 aa12.78□□□□□ -0.36
SMARCC1-201ENST00000254480 CDIP1Q9H305 208 aa12.78□□□□□ -0.36
SMARCC1-201ENST00000254480 LINC00588Q9Y4M8 146 aa12.76□□□□□ -0.37
SMARCC1-201ENST00000254480 RTL8CO15255 209 aa12.76□□□□□ -0.37
SMARCC1-201ENST00000254480 LINC01546A6NGU7 62 aa12.75□□□□□ -0.37
SMARCC1-201ENST00000254480 SMCPP49901 116 aaPredicted RBP12.74□□□□□ -0.37
SMARCC1-201ENST00000254480 RPL37AP61513 92 aaKnown RBP12.74□□□□□ -0.37
SMARCC1-201ENST00000254480 Q8NAQ8 132 aa12.72□□□□□ -0.37
SMARCC1-201ENST00000254480 FAM168BA1KXE4 195 aa12.72□□□□□ -0.37
SMARCC1-201ENST00000254480 EPM2AB3EWF7 344 aa12.71□□□□□ -0.37
SMARCC1-201ENST00000254480 hDV103S1A0JD37 113 aa12.7□□□□□ -0.38
SMARCC1-201ENST00000254480 CXCL6P80162 114 aa12.7□□□□□ -0.38
SMARCC1-201ENST00000254480 LINC00476Q8WZB0 136 aa12.7□□□□□ -0.38
SMARCC1-201ENST00000254480 NBDYA0A0U1RRE5 68 aa12.69□□□□□ -0.38
SMARCC1-201ENST00000254480 PRRC2CQ9Y520 2896 aaKnown RBP12.69□□□□□ -0.38
SMARCC1-201ENST00000254480 C16orf90A8MZG2 172 aa12.68□□□□□ -0.38
SMARCC1-201ENST00000254480 ELOF1P60002 83 aaKnown RBP12.68□□□□□ -0.38
SMARCC1-201ENST00000254480 IGLV5-45A0A087WSX0 123 aa12.67□□□□□ -0.38
SMARCC1-201ENST00000254480 Q6ZRP5 223 aa12.65□□□□□ -0.38
SMARCC1-201ENST00000254480 Q6ZRX8 168 aa12.65□□□□□ -0.38
SMARCC1-201ENST00000254480 TYMSOSQ8TAI1 123 aa12.64□□□□□ -0.39
SMARCC1-201ENST00000254480 IGLV8-61A0A075B6I0 122 aa12.64□□□□□ -0.39
SMARCC1-201ENST00000254480 CEP350Q5VT06 3117 aa12.64□□□□□ -0.39
SMARCC1-201ENST00000254480 PCSK5Q92824 1860 aa12.62□□□□□ -0.39
SMARCC1-201ENST00000254480 SPAG11AQ6PDA7 123 aa12.61□□□□□ -0.39
SMARCC1-201ENST00000254480 FAM229AH3BQW9 127 aa12.61□□□□□ -0.39
SMARCC1-201ENST00000254480 Q6ZQT0 140 aa12.61□□□□□ -0.39
SMARCC1-201ENST00000254480 H3BNG1 76 aa12.6□□□□□ -0.39
SMARCC1-201ENST00000254480 DNAH10OSP0CZ25 163 aa12.6□□□□□ -0.39
SMARCC1-201ENST00000254480 A0A1B0GU69 56 aa12.58□□□□□ -0.4
SMARCC1-201ENST00000254480 EPG5Q9HCE0 2579 aa12.58□□□□□ -0.4
SMARCC1-201ENST00000254480 LINC00313P59037 77 aa12.57□□□□□ -0.4
SMARCC1-201ENST00000254480 SERTAD4-AS1Q5TG53 156 aa12.56□□□□□ -0.4
SMARCC1-201ENST00000254480 Q8NBF4 154 aa12.56□□□□□ -0.4
SMARCC1-201ENST00000254480 PRO0461Q9UI25 63 aa12.56□□□□□ -0.4
SMARCC1-201ENST00000254480 Q96NJ1 140 aa12.56□□□□□ -0.4
SMARCC1-201ENST00000254480 KRTAP10-11P60412 298 aa12.55□□□□□ -0.4
SMARCC1-201ENST00000254480 TM2D3Q9BRN9 247 aa12.55□□□□□ -0.4
SMARCC1-201ENST00000254480 USP24Q9UPU5 2620 aa12.55□□□□□ -0.4
SMARCC1-201ENST00000254480 GVQW2A0A096LPI5 108 aaPredicted RBP12.53□□□□□ -0.4
SMARCC1-201ENST00000254480 PCNTO95613 3336 aa12.51□□□□□ -0.41
SMARCC1-201ENST00000254480 ACYP2P14621 99 aa12.5□□□□□ -0.41
SMARCC1-201ENST00000254480 BCE1O60756 84 aa12.5□□□□□ -0.41
SMARCC1-201ENST00000254480 A0A0G2JQZ4 141 aa12.49□□□□□ -0.41
SMARCC1-201ENST00000254480 A0A1W2PNN7 141 aa12.49□□□□□ -0.41
SMARCC1-201ENST00000254480 LITAFQ99732 161 aa12.49□□□□□ -0.41
SMARCC1-201ENST00000254480 TP53AIP1Q9HCN2 124 aa12.49□□□□□ -0.41
SMARCC1-201ENST00000254480 VPREB1P12018 145 aa12.49□□□□□ -0.41
SMARCC1-201ENST00000254480 BPTFQ12830 3046 aa12.48□□□□□ -0.41
SMARCC1-201ENST00000254480 EIF4EBP3O60516 100 aaPredicted RBP12.48□□□□□ -0.41
SMARCC1-201ENST00000254480 PLA2G1BP04054 148 aaKnown RBP12.48□□□□□ -0.41
SMARCC1-201ENST00000254480 FLNBO75369 2602 aaKnown RBP12.47□□□□□ -0.41
SMARCC1-201ENST00000254480 C5orf42Q9H799 3197 aa12.47□□□□□ -0.41
SMARCC1-201ENST00000254480 C4orf26Q17RF5 130 aa12.47□□□□□ -0.41
SMARCC1-201ENST00000254480 K7EIL1 84 aa12.47□□□□□ -0.41
SMARCC1-201ENST00000254480 WWC2-AS2Q96NR7 200 aa12.47□□□□□ -0.41
SMARCC1-201ENST00000254480 KRTAP10-3P60369 221 aa12.46□□□□□ -0.41
SMARCC1-201ENST00000254480 CSNK1G2-AS1Q8NCQ2 148 aa12.46□□□□□ -0.41
SMARCC1-201ENST00000254480 HECTD1Q9ULT8 2610 aa12.45□□□□□ -0.42
SMARCC1-201ENST00000254480 LOC110117498A0A087WWA1 95 aa12.45□□□□□ -0.42
SMARCC1-201ENST00000254480 TRAV22A0A0B4J277 110 aa12.44□□□□□ -0.42
SMARCC1-201ENST00000254480 K7EQZ3 153 aa12.44□□□□□ -0.42
SMARCC1-201ENST00000254480 TRBV7-4A0A0J9YYF1 115 aa12.44□□□□□ -0.42
SMARCC1-201ENST00000254480 SMR3BP02814 79 aaPredicted RBP12.43□□□□□ -0.42
SMARCC1-201ENST00000254480 IGLV6-57P01721 117 aa12.42□□□□□ -0.42
SMARCC1-201ENST00000254480 ANAPC11Q9NYG5 84 aa12.41□□□□□ -0.42
SMARCC1-201ENST00000254480 MGAM2Q2M2H8 2515 aa12.4□□□□□ -0.42
SMARCC1-201ENST00000254480 J3QL48 77 aa12.4□□□□□ -0.42
SMARCC1-201ENST00000254480 IGLV1-50A0A075B6I6 118 aa12.38□□□□□ -0.43
SMARCC1-201ENST00000254480 C9orf92A6NGG3 77 aa12.38□□□□□ -0.43
SMARCC1-201ENST00000254480 ATP11AUNQ6ZP68 121 aa12.38□□□□□ -0.43
SMARCC1-201ENST00000254480 DSCR10P59022 87 aa12.37□□□□□ -0.43
SMARCC1-201ENST00000254480 C15orf56Q8N910 161 aa12.35□□□□□ -0.43
SMARCC1-201ENST00000254480 GIG44P09565 113 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms