RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 EP400Q96L91 3159 aa13.08□□□□□ -0.32
SMPD3-201ENST00000219334 RTL8CO15255 209 aa13.08□□□□□ -0.32
SMPD3-201ENST00000219334 C6orf48Q9UBA6 75 aa13.08□□□□□ -0.32
SMPD3-201ENST00000219334 ACANP16112 2415 aa13.07□□□□□ -0.32
SMPD3-201ENST00000219334 KIAA0087Q14695 138 aa13.07□□□□□ -0.32
SMPD3-201ENST00000219334 TRBV7-7A0A0K0K1E9 115 aa13.07□□□□□ -0.32
SMPD3-201ENST00000219334 IGKV2D-30A0A075B6S6 120 aa13.06□□□□□ -0.32
SMPD3-201ENST00000219334 IGKV2-30P06310 120 aa13.06□□□□□ -0.32
SMPD3-201ENST00000219334 SMIM26A0A096LP01 95 aa13.06□□□□□ -0.32
SMPD3-201ENST00000219334 CRYGAP11844 174 aa13.04□□□□□ -0.32
SMPD3-201ENST00000219334 Q6ZRP5 223 aa13.03□□□□□ -0.32
SMPD3-201ENST00000219334 Q8NAQ8 132 aa13.02□□□□□ -0.33
SMPD3-201ENST00000219334 LINC00588Q9Y4M8 146 aa13.01□□□□□ -0.33
SMPD3-201ENST00000219334 PHF5AQ7RTV0 110 aaKnown RBP13□□□□□ -0.33
SMPD3-201ENST00000219334 hDV103S1A0JD37 113 aa12.99□□□□□ -0.33
SMPD3-201ENST00000219334 LINC00846Q9NV44 126 aa12.99□□□□□ -0.33
SMPD3-201ENST00000219334 EPG5Q9HCE0 2579 aa12.98□□□□□ -0.33
SMPD3-201ENST00000219334 TYMSOSQ8TAI1 123 aa12.98□□□□□ -0.33
SMPD3-201ENST00000219334 COL4A2P08572 1712 aa12.97□□□□□ -0.33
SMPD3-201ENST00000219334 ANKRD17O75179 2603 aaKnown RBP12.97□□□□□ -0.33
SMPD3-201ENST00000219334 SOSTDC1Q6X4U4 206 aa12.97□□□□□ -0.33
SMPD3-201ENST00000219334 C1orf64Q8NEQ6 169 aa12.96□□□□□ -0.33
SMPD3-201ENST00000219334 TMEM254Q8TBM7 123 aa12.95□□□□□ -0.34
SMPD3-201ENST00000219334 CXCL6P80162 114 aa12.95□□□□□ -0.34
SMPD3-201ENST00000219334 LINC01546A6NGU7 62 aa12.95□□□□□ -0.34
SMPD3-201ENST00000219334 IGLV5-45A0A087WSX0 123 aa12.94□□□□□ -0.34
SMPD3-201ENST00000219334 SPATA3Q8NHX4 192 aa12.94□□□□□ -0.34
SMPD3-201ENST00000219334 PLA2G1BP04054 148 aaKnown RBP12.93□□□□□ -0.34
SMPD3-201ENST00000219334 Q8NBF4 154 aa12.93□□□□□ -0.34
SMPD3-201ENST00000219334 J3QL48 77 aa12.92□□□□□ -0.34
SMPD3-201ENST00000219334 C7orf65Q6ZTY9 151 aa12.92□□□□□ -0.34
SMPD3-201ENST00000219334 EPM2AB3EWF7 344 aa12.92□□□□□ -0.34
SMPD3-201ENST00000219334 TP53AIP1Q9HCN2 124 aa12.91□□□□□ -0.34
SMPD3-201ENST00000219334 ELOF1P60002 83 aaKnown RBP12.91□□□□□ -0.34
SMPD3-201ENST00000219334 CHTF8P0CG12 524 aa12.9□□□□□ -0.34
SMPD3-201ENST00000219334 Q6ZRX8 168 aa12.9□□□□□ -0.34
SMPD3-201ENST00000219334 Q9UF83 564 aa12.9□□□□□ -0.34
SMPD3-201ENST00000219334 FLNBO75369 2602 aaKnown RBP12.89□□□□□ -0.35
SMPD3-201ENST00000219334 GVQW2A0A096LPI5 108 aaPredicted RBP12.89□□□□□ -0.35
SMPD3-201ENST00000219334 A0A1B0GW54 56 aa12.88□□□□□ -0.35
SMPD3-201ENST00000219334 PTPRBP23467 1997 aa12.87□□□□□ -0.35
SMPD3-201ENST00000219334 DNAH10OSP0CZ25 163 aa12.87□□□□□ -0.35
SMPD3-201ENST00000219334 SMIM29Q86T20 159 aa12.86□□□□□ -0.35
SMPD3-201ENST00000219334 LINC00476Q8WZB0 136 aa12.85□□□□□ -0.35
SMPD3-201ENST00000219334 BCE1O60756 84 aa12.85□□□□□ -0.35
SMPD3-201ENST00000219334 LINC00313P59037 77 aa12.84□□□□□ -0.35
SMPD3-201ENST00000219334 RPL37AP61513 92 aaKnown RBP12.83□□□□□ -0.36
SMPD3-201ENST00000219334 CENPFP49454 3210 aa12.83□□□□□ -0.36
SMPD3-201ENST00000219334 PSPHP1O15172 72 aa12.82□□□□□ -0.36
SMPD3-201ENST00000219334 PMAIP1Q13794 54 aa12.81□□□□□ -0.36
SMPD3-201ENST00000219334 K7EIL1 84 aa12.81□□□□□ -0.36
SMPD3-201ENST00000219334 KLK9Q2XQG4 91 aa12.79□□□□□ -0.36
SMPD3-201ENST00000219334 ATP11AUNQ6ZP68 121 aa12.78□□□□□ -0.36
SMPD3-201ENST00000219334 ST20-AS1Q8NBB2 130 aa12.78□□□□□ -0.36
SMPD3-201ENST00000219334 ACYP2P14621 99 aa12.78□□□□□ -0.36
SMPD3-201ENST00000219334 COL27A1Q8IZC6 1860 aaPredicted RBP12.78□□□□□ -0.36
SMPD3-201ENST00000219334 C1orf195Q5TG92 126 aa12.77□□□□□ -0.36
SMPD3-201ENST00000219334 FAM218AQ96MZ4 157 aa12.75□□□□□ -0.37
SMPD3-201ENST00000219334 KRTAP10-11P60412 298 aa12.74□□□□□ -0.37
SMPD3-201ENST00000219334 Q96NJ1 140 aa12.74□□□□□ -0.37
SMPD3-201ENST00000219334 A0A1B0GU69 56 aa12.73□□□□□ -0.37
SMPD3-201ENST00000219334 Q6ZQT0 140 aa12.7□□□□□ -0.38
SMPD3-201ENST00000219334 CSNK1G2-AS1Q8NCQ2 148 aa12.7□□□□□ -0.38
SMPD3-201ENST00000219334 C19orf73Q9NVV2 129 aa12.7□□□□□ -0.38
SMPD3-201ENST00000219334 VPREB1P12018 145 aa12.69□□□□□ -0.38
SMPD3-201ENST00000219334 LOC110117498A0A087WWA1 95 aa12.69□□□□□ -0.38
SMPD3-201ENST00000219334 FAM168BA1KXE4 195 aa12.68□□□□□ -0.38
SMPD3-201ENST00000219334 H3BPC8 53 aa12.67□□□□□ -0.38
SMPD3-201ENST00000219334 MGAM2Q2M2H8 2515 aa12.67□□□□□ -0.38
SMPD3-201ENST00000219334 HECTD1Q9ULT8 2610 aa12.67□□□□□ -0.38
SMPD3-201ENST00000219334 TRAV22A0A0B4J277 110 aa12.67□□□□□ -0.38
SMPD3-201ENST00000219334 C8orf87E5RJ46 101 aa12.65□□□□□ -0.38
SMPD3-201ENST00000219334 COX6B2Q6YFQ2 88 aa12.65□□□□□ -0.38
SMPD3-201ENST00000219334 A0A096LNT2 108 aa12.64□□□□□ -0.39
SMPD3-201ENST00000219334 TRBV7-4A0A0J9YYF1 115 aa12.64□□□□□ -0.39
SMPD3-201ENST00000219334 GOLGB1Q14789 3259 aaKnown RBP12.63□□□□□ -0.39
SMPD3-201ENST00000219334 USP24Q9UPU5 2620 aa12.63□□□□□ -0.39
SMPD3-201ENST00000219334 IGLV6-57P01721 117 aa12.63□□□□□ -0.39
SMPD3-201ENST00000219334 SERTAD4-AS1Q5TG53 156 aa12.62□□□□□ -0.39
SMPD3-201ENST00000219334 CDIP1Q9H305 208 aa12.62□□□□□ -0.39
SMPD3-201ENST00000219334 IGLV1-50A0A075B6I6 118 aa12.62□□□□□ -0.39
SMPD3-201ENST00000219334 A0A087WTM6 91 aa12.59□□□□□ -0.39
SMPD3-201ENST00000219334 LINC00304Q8N9R0 145 aa12.58□□□□□ -0.4
SMPD3-201ENST00000219334 KRTAP10-3P60369 221 aa12.58□□□□□ -0.4
SMPD3-201ENST00000219334 SMCPP49901 116 aaPredicted RBP12.58□□□□□ -0.4
SMPD3-201ENST00000219334 SPAG11AQ6PDA7 123 aa12.58□□□□□ -0.4
SMPD3-201ENST00000219334 KCNQ1DNQ9H478 68 aa12.58□□□□□ -0.4
SMPD3-201ENST00000219334 A8MWP4 228 aa12.57□□□□□ -0.4
SMPD3-201ENST00000219334 LOC101927531A0A1B0GV80 90 aa12.57□□□□□ -0.4
SMPD3-201ENST00000219334 PRR34Q9NV39 138 aa12.56□□□□□ -0.4
SMPD3-201ENST00000219334 ZNF861PO60384 105 aa12.56□□□□□ -0.4
SMPD3-201ENST00000219334 LINC00336Q6ZUF6 198 aa12.55□□□□□ -0.4
SMPD3-201ENST00000219334 TM2D3Q9BRN9 247 aa12.55□□□□□ -0.4
SMPD3-201ENST00000219334 SSBP3-AS1Q7Z2R9 100 aa12.55□□□□□ -0.4
SMPD3-201ENST00000219334 MRPL34Q9BQ48 92 aaKnown RBP12.55□□□□□ -0.4
SMPD3-201ENST00000219334 SMR3BP02814 79 aaPredicted RBP12.54□□□□□ -0.4
SMPD3-201ENST00000219334 LITAFQ99732 161 aa12.52□□□□□ -0.41
SMPD3-201ENST00000219334 C15orf56Q8N910 161 aa12.51□□□□□ -0.41
SMPD3-201ENST00000219334 C9orf163Q8N9P6 203 aa12.51□□□□□ -0.41
SMPD3-201ENST00000219334 PCSK5Q92824 1860 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms