RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 FABP9Q0Z7S8 132 aa6.32□□□□□ -1.4
SCN1A-222ENST00000642141 KIAA0087Q14695 138 aa6.32□□□□□ -1.4
SCN1A-222ENST00000642141 TOMM7Q9P0U1 55 aa6.32□□□□□ -1.4
SCN1A-222ENST00000642141 LAMTOR2Q9Y2Q5 125 aa6.32□□□□□ -1.4
SCN1A-222ENST00000642141 PRSS47A8MTI9 375 aa6.31□□□□□ -1.4
SCN1A-222ENST00000642141 KRTAP10-8P60410 259 aa6.31□□□□□ -1.4
SCN1A-222ENST00000642141 Q6ZN92 141 aa6.31□□□□□ -1.4
SCN1A-222ENST00000642141 LINC00173Q6ZV60 143 aa6.31□□□□□ -1.4
SCN1A-222ENST00000642141 C2orf88Q9BSF0 95 aa6.31□□□□□ -1.4
SCN1A-222ENST00000642141 IGIPA6NJ69 53 aa6.3□□□□□ -1.4
SCN1A-222ENST00000642141 F8WDY8 70 aa6.3□□□□□ -1.4
SCN1A-222ENST00000642141 ORMDL2Q53FV1 153 aa6.3□□□□□ -1.4
SCN1A-222ENST00000642141 COA6Q5JTJ3 125 aaKnown RBP6.3□□□□□ -1.4
SCN1A-222ENST00000642141 KRTAP7-1Q8IUC3 87 aa6.3□□□□□ -1.4
SCN1A-222ENST00000642141 PRSS2P07478 247 aa6.29□□□□□ -1.4
SCN1A-222ENST00000642141 COX19Q49B96 90 aa6.29□□□□□ -1.4
SCN1A-222ENST00000642141 LINC00469Q8N7U9 141 aa6.29□□□□□ -1.4
SCN1A-222ENST00000642141 PACRGQ96M98 296 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-222ENST00000642141 AMELXQ99217 191 aa6.29□□□□□ -1.4
SCN1A-222ENST00000642141 TLX1NBP0CAT3 122 aa6.28□□□□□ -1.4
SCN1A-222ENST00000642141 CKS1BP61024 79 aa6.28□□□□□ -1.4
SCN1A-222ENST00000642141 C6orf226Q5I0X4 101 aa6.28□□□□□ -1.4
SCN1A-222ENST00000642141 C9orf129Q5T035 196 aaKnown RBP6.28□□□□□ -1.4
SCN1A-222ENST00000642141 NXT2Q9NPJ8 142 aaKnown RBP6.28□□□□□ -1.4
SCN1A-222ENST00000642141 CDKN2A-AS1Q9UH64 79 aa6.28□□□□□ -1.4
SCN1A-222ENST00000642141 TRBV30A0A0K0K1B3 111 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 NDUFC2-KCTD14E9PQ53 114 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 M0QXV9 152 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 HIST1H2BKO60814 126 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 IGLV7-43P04211 117 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 HIST1H2BJP06899 126 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 HIST1H2BOP23527 126 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 HIST1H2BBP33778 126 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 HIST1H2BDP58876 126 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 HIST1H2BCP62807 126 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 UBE2BP63146 152 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 HIST2H2BEQ16778 126 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 LBHQ53QV2 105 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-222ENST00000642141 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-222ENST00000642141 HIST1H2BHQ93079 126 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 SCGB3A1Q96QR1 104 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 HIST1H2BNQ99877 126 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 HIST1H2BMQ99879 126 aa6.27□□□□□ -1.41
SCN1A-222ENST00000642141 ALKBH7Q9BT30 221 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-222ENST00000642141 GEMIN7Q9H840 131 aaKnown RBP6.27□□□□□ -1.41
SCN1A-222ENST00000642141 PRR26Q8N8Z3 221 aa6.26□□□□□ -1.41
SCN1A-222ENST00000642141 TOMM6Q96B49 74 aa6.26□□□□□ -1.41
SCN1A-222ENST00000642141 XAGE1AQ9HD64 81 aa6.26□□□□□ -1.41
SCN1A-222ENST00000642141 RNF213Q63HN8 5207 aa6.25□□□□□ -1.41
SCN1A-222ENST00000642141 NDUFA6P56556 154 aa6.25□□□□□ -1.41
SCN1A-222ENST00000642141 LINC01561Q8N1V8 128 aa6.25□□□□□ -1.41
SCN1A-222ENST00000642141 DIRC1Q969H9 104 aa6.25□□□□□ -1.41
SCN1A-222ENST00000642141 PCP4L1A6NKN8 68 aa6.24□□□□□ -1.41
SCN1A-222ENST00000642141 K7EMI3 77 aa6.24□□□□□ -1.41
SCN1A-222ENST00000642141 TRGC2P03986 189 aa6.24□□□□□ -1.41
SCN1A-222ENST00000642141 SMCPP49901 116 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-222ENST00000642141 HERVK_113P63121 156 aa6.24□□□□□ -1.41
SCN1A-222ENST00000642141 LRP2P98164 4655 aa6.24□□□□□ -1.41
SCN1A-222ENST00000642141 PAPPA-AS1Q5QFB9 102 aa6.24□□□□□ -1.41
SCN1A-222ENST00000642141 Q8IZM0 81 aa6.24□□□□□ -1.41
SCN1A-222ENST00000642141 HIST3H2BBQ8N257 126 aa6.24□□□□□ -1.41
SCN1A-222ENST00000642141 TSTD3H0UI37 97 aa6.23□□□□□ -1.41
SCN1A-222ENST00000642141 H0Y9J4 135 aa6.23□□□□□ -1.41
SCN1A-222ENST00000642141 NPSP0C0P6 89 aa6.23□□□□□ -1.41
SCN1A-222ENST00000642141 G0S2P27469 103 aa6.23□□□□□ -1.41
SCN1A-222ENST00000642141 ERASQ7Z444 233 aa6.23□□□□□ -1.41
SCN1A-222ENST00000642141 FAM19A3Q7Z5A8 133 aa6.23□□□□□ -1.41
SCN1A-222ENST00000642141 TIMM17AQ99595 171 aa6.23□□□□□ -1.41
SCN1A-222ENST00000642141 SPINK8P0C7L1 97 aa6.22□□□□□ -1.41
SCN1A-222ENST00000642141 SEC11AP67812 179 aa6.22□□□□□ -1.41
SCN1A-222ENST00000642141 JOSD1Q15040 202 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-222ENST00000642141 LCE2AQ5TA79 106 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-222ENST00000642141 GNB1LQ9BYB4 327 aa6.22□□□□□ -1.41
SCN1A-222ENST00000642141 MRPL18Q9H0U6 180 aaKnown RBP6.22□□□□□ -1.41
SCN1A-222ENST00000642141 CST9LQ9H4G1 147 aa6.22□□□□□ -1.41
SCN1A-222ENST00000642141 C22orf24Q9Y442 160 aa6.22□□□□□ -1.41
SCN1A-222ENST00000642141 F8VRH5 84 aa6.21□□□□□ -1.42
SCN1A-222ENST00000642141 FA2HQ7L5A8 372 aa6.21□□□□□ -1.42
SCN1A-222ENST00000642141 TINCRA0A1B0GVN0 87 aa6.2□□□□□ -1.42
SCN1A-222ENST00000642141 RPL37AP8A6NKH3 93 aa6.2□□□□□ -1.42
SCN1A-222ENST00000642141 SMIM1B2RUZ4 78 aa6.2□□□□□ -1.42
SCN1A-222ENST00000642141 PYY3Q5JQD4 70 aa6.2□□□□□ -1.42
SCN1A-222ENST00000642141 COX7B2Q8TF08 81 aa6.2□□□□□ -1.42
SCN1A-222ENST00000642141 GAGE10A6NGK3 116 aa6.19□□□□□ -1.42
SCN1A-222ENST00000642141 PMCHL1Q16048 86 aa6.19□□□□□ -1.42
SCN1A-222ENST00000642141 HIST1H2BLQ99880 126 aa6.19□□□□□ -1.42
SCN1A-222ENST00000642141 LINC01546A6NGU7 62 aa6.18□□□□□ -1.42
SCN1A-222ENST00000642141 KRTAP1-4P0C5Y4 121 aa6.18□□□□□ -1.42
SCN1A-222ENST00000642141 PMVKQ15126 192 aa6.18□□□□□ -1.42
SCN1A-222ENST00000642141 PDZD11Q5EBL8 140 aa6.18□□□□□ -1.42
SCN1A-222ENST00000642141 TRAPPC1Q9Y5R8 145 aa6.18□□□□□ -1.42
SCN1A-222ENST00000642141 FABP4P15090 132 aa6.17□□□□□ -1.42
SCN1A-222ENST00000642141 MRPL55Q7Z7F7 128 aaKnown RBP6.17□□□□□ -1.42
SCN1A-222ENST00000642141 IGLV5-45A0A087WSX0 123 aa6.16□□□□□ -1.42
SCN1A-222ENST00000642141 LINC00587B1AMM8 73 aa6.16□□□□□ -1.42
SCN1A-222ENST00000642141 ZNF861PO60384 105 aa6.16□□□□□ -1.42
SCN1A-222ENST00000642141 PFN2P35080 140 aa6.16□□□□□ -1.42
SCN1A-222ENST00000642141 CXCL5P42830 114 aa6.16□□□□□ -1.42
SCN1A-222ENST00000642141 LINC00167Q96N53 147 aa6.16□□□□□ -1.42
SCN1A-222ENST00000642141 LPAP08519 4548 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 154 ms