RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 PACRGQ96M98 296 aaPredicted RBP8.46□□□□□ -1.05
LINC00339-211ENST00000641009 CTDSP1Q9GZU7 261 aa8.46□□□□□ -1.05
LINC00339-211ENST00000641009 LPAP08519 4548 aa8.45□□□□□ -1.06
LINC00339-211ENST00000641009 TMEM238LA0A1B0GVL6 79 aa8.45□□□□□ -1.06
LINC00339-211ENST00000641009 A6NJY4 79 aa8.45□□□□□ -1.06
LINC00339-211ENST00000641009 C9orf129Q5T035 196 aaKnown RBP8.45□□□□□ -1.06
LINC00339-211ENST00000641009 DIRC1Q969H9 104 aa8.45□□□□□ -1.06
LINC00339-211ENST00000641009 TOMM7Q9P0U1 55 aa8.45□□□□□ -1.06
LINC00339-211ENST00000641009 K7EMI3 77 aa8.45□□□□□ -1.06
LINC00339-211ENST00000641009 PRSS2P07478 247 aa8.45□□□□□ -1.06
LINC00339-211ENST00000641009 NXT2Q9NPJ8 142 aaKnown RBP8.45□□□□□ -1.06
LINC00339-211ENST00000641009 NPSP0C0P6 89 aa8.44□□□□□ -1.06
LINC00339-211ENST00000641009 UBE2BP63146 152 aa8.44□□□□□ -1.06
LINC00339-211ENST00000641009 KIAA1644Q3SXP7 199 aa8.44□□□□□ -1.06
LINC00339-211ENST00000641009 PRR26Q8N8Z3 221 aa8.44□□□□□ -1.06
LINC00339-211ENST00000641009 YPEL4Q96NS1 127 aa8.44□□□□□ -1.06
LINC00339-211ENST00000641009 H0Y9J4 135 aa8.43□□□□□ -1.06
LINC00339-211ENST00000641009 CKS1BP61024 79 aa8.43□□□□□ -1.06
LINC00339-211ENST00000641009 FAM19A3Q7Z5A8 133 aa8.43□□□□□ -1.06
LINC00339-211ENST00000641009 C6orf226Q5I0X4 101 aa8.42□□□□□ -1.06
LINC00339-211ENST00000641009 Q8IZM0 81 aa8.42□□□□□ -1.06
LINC00339-211ENST00000641009 LINC00469Q8N7U9 141 aa8.42□□□□□ -1.06
LINC00339-211ENST00000641009 ALKBH7Q9BT30 221 aaPredicted RBP8.42□□□□□ -1.06
LINC00339-211ENST00000641009 RPS10P5Q9NQ39 176 aa8.42□□□□□ -1.06
LINC00339-211ENST00000641009 CDKN2A-AS1Q9UH64 79 aa8.42□□□□□ -1.06
LINC00339-211ENST00000641009 LINC00518Q8N0U6 118 aa8.41□□□□□ -1.06
LINC00339-211ENST00000641009 TOMM6Q96B49 74 aa8.41□□□□□ -1.06
LINC00339-211ENST00000641009 HERVK_113P63121 156 aa8.4□□□□□ -1.06
LINC00339-211ENST00000641009 PAPPA-AS1Q5QFB9 102 aa8.4□□□□□ -1.06
LINC00339-211ENST00000641009 TIMM17AQ99595 171 aa8.4□□□□□ -1.06
LINC00339-211ENST00000641009 GEMIN7Q9H840 131 aaKnown RBP8.4□□□□□ -1.06
LINC00339-211ENST00000641009 G0S2P27469 103 aa8.39□□□□□ -1.07
LINC00339-211ENST00000641009 RAB5BP61020 215 aa8.39□□□□□ -1.07
LINC00339-211ENST00000641009 SEC11AP67812 179 aa8.39□□□□□ -1.07
LINC00339-211ENST00000641009 XAGE1AQ9HD64 81 aa8.39□□□□□ -1.07
LINC00339-211ENST00000641009 KRTAP1-4P0C5Y4 121 aa8.38□□□□□ -1.07
LINC00339-211ENST00000641009 C5orf52A6NGY3 159 aa8.38□□□□□ -1.07
LINC00339-211ENST00000641009 F8VRH5 84 aa8.38□□□□□ -1.07
LINC00339-211ENST00000641009 ERASQ7Z444 233 aa8.38□□□□□ -1.07
LINC00339-211ENST00000641009 SCGB3A1Q96QR1 104 aa8.38□□□□□ -1.07
LINC00339-211ENST00000641009 TRAV9-1A0A075B6T8 112 aa8.37□□□□□ -1.07
LINC00339-211ENST00000641009 C22orf24Q9Y442 160 aa8.37□□□□□ -1.07
LINC00339-211ENST00000641009 SMIM1B2RUZ4 78 aa8.36□□□□□ -1.07
LINC00339-211ENST00000641009 IGLV1-50A0A075B6I6 118 aa8.35□□□□□ -1.07
LINC00339-211ENST00000641009 TINCRA0A1B0GVN0 87 aa8.34□□□□□ -1.07
LINC00339-211ENST00000641009 GNB1LQ9BYB4 327 aa8.34□□□□□ -1.07
LINC00339-211ENST00000641009 LINC01546A6NGU7 62 aa8.33□□□□□ -1.08
LINC00339-211ENST00000641009 ZNF861PO60384 105 aa8.33□□□□□ -1.08
LINC00339-211ENST00000641009 S100PP25815 95 aa8.33□□□□□ -1.08
LINC00339-211ENST00000641009 CXCL5P42830 114 aa8.33□□□□□ -1.08
LINC00339-211ENST00000641009 COX7B2Q8TF08 81 aa8.33□□□□□ -1.08
LINC00339-211ENST00000641009 IGLV5-45A0A087WSX0 123 aa8.32□□□□□ -1.08
LINC00339-211ENST00000641009 SNRPEP62304 92 aaKnown RBP8.32□□□□□ -1.08
LINC00339-211ENST00000641009 LBHQ53QV2 105 aaPredicted RBP8.32□□□□□ -1.08
LINC00339-211ENST00000641009 PDZD11Q5EBL8 140 aa8.32□□□□□ -1.08
LINC00339-211ENST00000641009 MRPL55Q7Z7F7 128 aaKnown RBP8.32□□□□□ -1.08
LINC00339-211ENST00000641009 CST9LQ9H4G1 147 aa8.32□□□□□ -1.08
LINC00339-211ENST00000641009 NUPR1O60356 82 aa8.32□□□□□ -1.08
LINC00339-211ENST00000641009 SPINK8P0C7L1 97 aa8.32□□□□□ -1.08
LINC00339-211ENST00000641009 FA2HQ7L5A8 372 aa8.31□□□□□ -1.08
LINC00339-211ENST00000641009 MRPL18Q9H0U6 180 aaKnown RBP8.31□□□□□ -1.08
LINC00339-211ENST00000641009 TP73-AS1Q9UF72 201 aa8.31□□□□□ -1.08
LINC00339-211ENST00000641009 LINC01549A6NIU2 74 aa8.3□□□□□ -1.08
LINC00339-211ENST00000641009 RPL13AP40429 203 aaKnown RBP8.3□□□□□ -1.08
LINC00339-211ENST00000641009 FABP9Q0Z7S8 132 aa8.3□□□□□ -1.08
LINC00339-211ENST00000641009 PMVKQ15126 192 aa8.3□□□□□ -1.08
LINC00339-211ENST00000641009 RPL37AP8A6NKH3 93 aa8.29□□□□□ -1.08
LINC00339-211ENST00000641009 S100A6P06703 90 aa8.29□□□□□ -1.08
LINC00339-211ENST00000641009 LINC00167Q96N53 147 aa8.29□□□□□ -1.08
LINC00339-211ENST00000641009 AKR1D1P51857 326 aa8.28□□□□□ -1.08
LINC00339-211ENST00000641009 S100A12P80511 92 aa8.28□□□□□ -1.08
LINC00339-211ENST00000641009 COX19Q49B96 90 aa8.28□□□□□ -1.08
LINC00339-211ENST00000641009 C12orf57Q99622 126 aa8.28□□□□□ -1.08
LINC00339-211ENST00000641009 GAGE10A6NGK3 116 aa8.27□□□□□ -1.09
LINC00339-211ENST00000641009 BCE1O60756 84 aa8.27□□□□□ -1.09
LINC00339-211ENST00000641009 SMIM6P0DI80 62 aa8.27□□□□□ -1.09
LINC00339-211ENST00000641009 RPL28P46779 137 aaKnown RBP8.26□□□□□ -1.09
LINC00339-211ENST00000641009 A0A096LNJ9 63 aa8.26□□□□□ -1.09
LINC00339-211ENST00000641009 A0A087X002 238 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 H3BRM9 83 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 HIST1H2BKO60814 126 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 ATP5LO75964 103 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 HIST1H2BJP06899 126 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 IGLC3P0DOY3 106 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 HIST1H2BOP23527 126 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 HIST1H2BBP33778 126 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 NDUFA6P56556 154 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 HIST1H2BDP58876 126 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 HIST1H2BCP62807 126 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 PRR4Q16378 134 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 HIST2H2BEQ16778 126 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.25□□□□□ -1.09
LINC00339-211ENST00000641009 HIST1H2BHQ93079 126 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 URB1-AS1Q96HZ7 61 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 HIST1H2BNQ99877 126 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 HIST1H2BMQ99879 126 aa8.25□□□□□ -1.09
LINC00339-211ENST00000641009 IGLV5-37A0A075B6J1 123 aa8.24□□□□□ -1.09
LINC00339-211ENST00000641009 NKAPP1Q8N9T2 125 aa8.24□□□□□ -1.09
LINC00339-211ENST00000641009 IGLV5-39A0A0G2JS06 123 aa8.23□□□□□ -1.09
LINC00339-211ENST00000641009 TRGC2P03986 189 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms