RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 STPG4Q8N801 248 aa6.45□□□□□ -1.38
CLN3-261ENST00000637686 DLEU1O43261 78 aa6.44□□□□□ -1.38
CLN3-261ENST00000637686 MALP21145 153 aa6.44□□□□□ -1.38
CLN3-261ENST00000637686 CXCL5P42830 114 aa6.44□□□□□ -1.38
CLN3-261ENST00000637686 C14orf177Q52M58 125 aa6.44□□□□□ -1.38
CLN3-261ENST00000637686 C5orf38Q86SI9 138 aa6.44□□□□□ -1.38
CLN3-261ENST00000637686 Q8IZM0 81 aa6.44□□□□□ -1.38
CLN3-261ENST00000637686 PAM16Q9Y3D7 125 aa6.44□□□□□ -1.38
CLN3-261ENST00000637686 APOBP04114 4563 aaKnown RBP6.44□□□□□ -1.38
CLN3-261ENST00000637686 HSPG2P98160 4391 aa6.43□□□□□ -1.38
CLN3-261ENST00000637686 J3QQQ9 107 aa6.43□□□□□ -1.38
CLN3-261ENST00000637686 SPINK8P0C7L1 97 aa6.43□□□□□ -1.38
CLN3-261ENST00000637686 COX8AP10176 69 aa6.43□□□□□ -1.38
CLN3-261ENST00000637686 GVQW2A0A096LPI5 108 aaPredicted RBP6.42□□□□□ -1.38
CLN3-261ENST00000637686 LGALS3P17931 250 aaKnown RBP6.42□□□□□ -1.38
CLN3-261ENST00000637686 MAJINQ3KP22 176 aa6.42□□□□□ -1.38
CLN3-261ENST00000637686 LINC01620Q4KN68 170 aa6.42□□□□□ -1.38
CLN3-261ENST00000637686 COX7B2Q8TF08 81 aa6.42□□□□□ -1.38
CLN3-261ENST00000637686 C2orf48Q96LS8 159 aa6.42□□□□□ -1.38
CLN3-261ENST00000637686 HERC2O95714 4834 aa6.42□□□□□ -1.38
CLN3-261ENST00000637686 IGKV2D-26A0A0A0MRZ7 120 aa6.41□□□□□ -1.38
CLN3-261ENST00000637686 NDUFA1O15239 70 aa6.41□□□□□ -1.38
CLN3-261ENST00000637686 XGP55808 180 aa6.41□□□□□ -1.38
CLN3-261ENST00000637686 HERV-K104P63124 156 aa6.41□□□□□ -1.38
CLN3-261ENST00000637686 KIAA0087Q14695 138 aa6.41□□□□□ -1.38
CLN3-261ENST00000637686 BOD1L2Q8IYS8 172 aa6.41□□□□□ -1.38
CLN3-261ENST00000637686 ORAOV1Q8WV07 137 aa6.41□□□□□ -1.38
CLN3-261ENST00000637686 MYMXA0A1B0GTQ4 84 aa6.4□□□□□ -1.38
CLN3-261ENST00000637686 LINC00587B1AMM8 73 aa6.4□□□□□ -1.38
CLN3-261ENST00000637686 TSTD3H0UI37 97 aa6.4□□□□□ -1.38
CLN3-261ENST00000637686 PRSS2P07478 247 aa6.4□□□□□ -1.38
CLN3-261ENST00000637686 SLC25A34Q6PIV7 304 aa6.4□□□□□ -1.38
CLN3-261ENST00000637686 C15orf56Q8N910 161 aa6.4□□□□□ -1.38
CLN3-261ENST00000637686 ZNF625Q96I27 306 aaPredicted RBP6.4□□□□□ -1.38
CLN3-261ENST00000637686 FAM30AQ9NZY2 134 aa6.4□□□□□ -1.38
CLN3-261ENST00000637686 UQCR10Q9UDW1 63 aa6.4□□□□□ -1.38
CLN3-261ENST00000637686 NDUFA12Q9UI09 145 aa6.4□□□□□ -1.38
CLN3-261ENST00000637686 RYR1P21817 5038 aa6.4□□□□□ -1.39
CLN3-261ENST00000637686 TSPEAR-AS2P59090 65 aa6.39□□□□□ -1.39
CLN3-261ENST00000637686 HAMPP81172 84 aa6.39□□□□□ -1.39
CLN3-261ENST00000637686 SPAG11BQ08648 103 aa6.39□□□□□ -1.39
CLN3-261ENST00000637686 C6orf226Q5I0X4 101 aa6.39□□□□□ -1.39
CLN3-261ENST00000637686 HIGD1BQ9P298 99 aa6.39□□□□□ -1.39
CLN3-261ENST00000637686 DNAH8Q96JB1 4490 aa6.39□□□□□ -1.39
CLN3-261ENST00000637686 ZNF815PA8K554 130 aa6.38□□□□□ -1.39
CLN3-261ENST00000637686 ZNF561-AS1K7EIQ3 104 aa6.38□□□□□ -1.39
CLN3-261ENST00000637686 TIMM17BO60830 172 aa6.38□□□□□ -1.39
CLN3-261ENST00000637686 SLPIP03973 132 aa6.38□□□□□ -1.39
CLN3-261ENST00000637686 HIGD2BQ4VC39 106 aa6.38□□□□□ -1.39
CLN3-261ENST00000637686 PCP2Q8IVA1 136 aa6.38□□□□□ -1.39
CLN3-261ENST00000637686 MIEN1Q9BRT3 115 aa6.38□□□□□ -1.39
CLN3-261ENST00000637686 TRBV30A0A0K0K1B3 111 aa6.37□□□□□ -1.39
CLN3-261ENST00000637686 CKS1BP61024 79 aa6.37□□□□□ -1.39
CLN3-261ENST00000637686 RNF151Q2KHN1 245 aa6.37□□□□□ -1.39
CLN3-261ENST00000637686 PPDPFQ9H3Y8 114 aa6.37□□□□□ -1.39
CLN3-261ENST00000637686 TOMM7Q9P0U1 55 aa6.37□□□□□ -1.39
CLN3-261ENST00000637686 A0A0J9YXY3 114 aa6.36□□□□□ -1.39
CLN3-261ENST00000637686 CNBPP62633 177 aaKnown RBP6.36□□□□□ -1.39
CLN3-261ENST00000637686 COX17Q14061 63 aa6.36□□□□□ -1.39
CLN3-261ENST00000637686 Q6ZSA8 131 aa6.36□□□□□ -1.39
CLN3-261ENST00000637686 Q6ZVH6 145 aa6.36□□□□□ -1.39
CLN3-261ENST00000637686 Q8N1X5 172 aa6.36□□□□□ -1.39
CLN3-261ENST00000637686 C9orf163Q8N9P6 203 aa6.36□□□□□ -1.39
CLN3-261ENST00000637686 C14orf144Q96I85 54 aa6.36□□□□□ -1.39
CLN3-261ENST00000637686 KRTAP4-5Q9BYR2 181 aa6.36□□□□□ -1.39
CLN3-261ENST00000637686 SMR3BP02814 79 aaPredicted RBP6.35□□□□□ -1.39
CLN3-261ENST00000637686 CIRBPQ14011 172 aaKnown RBP6.35□□□□□ -1.39
CLN3-261ENST00000637686 LINC00526Q96FQ7 95 aa6.35□□□□□ -1.39
CLN3-261ENST00000637686 SPANXB1Q9NS25 103 aaPredicted RBP6.35□□□□□ -1.39
CLN3-261ENST00000637686 PKIGQ9Y2B9 76 aa6.35□□□□□ -1.39
CLN3-261ENST00000637686 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.34□□□□□ -1.39
CLN3-261ENST00000637686 TMEM238C9JI98 176 aa6.34□□□□□ -1.39
CLN3-261ENST00000637686 TAL2Q16559 108 aa6.34□□□□□ -1.39
CLN3-261ENST00000637686 SCGB1D4Q6XE38 83 aa6.34□□□□□ -1.39
CLN3-261ENST00000637686 SDIM1Q6ZPB5 146 aa6.34□□□□□ -1.39
CLN3-261ENST00000637686 CAMK2N2Q96S95 79 aa6.34□□□□□ -1.39
CLN3-261ENST00000637686 TLX1NBP0CAT3 122 aa6.33□□□□□ -1.4
CLN3-261ENST00000637686 PTTG1IPP53801 180 aa6.33□□□□□ -1.4
CLN3-261ENST00000637686 SYCNQ0VAF6 134 aa6.33□□□□□ -1.4
CLN3-261ENST00000637686 C2orf91Q6ZV80 131 aa6.33□□□□□ -1.4
CLN3-261ENST00000637686 SCXQ7RTU7 201 aa6.33□□□□□ -1.4
CLN3-261ENST00000637686 COPS9Q8WXC6 57 aa6.33□□□□□ -1.4
CLN3-261ENST00000637686 SPANXDQ9BXN6 97 aa6.33□□□□□ -1.4
CLN3-261ENST00000637686 TTTY13Q9BZ97 58 aa6.33□□□□□ -1.4
CLN3-261ENST00000637686 PRO1933Q9H354 126 aa6.33□□□□□ -1.4
CLN3-261ENST00000637686 SPANXCQ9NY87 97 aa6.33□□□□□ -1.4
CLN3-261ENST00000637686 HNRNPA3P51991 378 aaKnown RBP6.32□□□□□ -1.4
CLN3-261ENST00000637686 CARD19Q96LW7 228 aa6.32□□□□□ -1.4
CLN3-261ENST00000637686 TP73-AS1Q9UF72 201 aa6.32□□□□□ -1.4
CLN3-261ENST00000637686 ERG28Q9UKR5 140 aa6.32□□□□□ -1.4
CLN3-261ENST00000637686 FAT1Q14517 4588 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 LOC107984156A0A0G2JMH3 177 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 EPM2AB3EWF7 344 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 IFITM1P13164 125 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 DDTP30046 118 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 MEIG1Q5JSS6 88 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 C2orf82Q6UX34 121 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 UNQ6190/PRO20217Q6UXQ8 127 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 Q6ZRU5 148 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 ARL17AQ8IVW1 177 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms