RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 TIAM2Q8IVF5 1701 aa-1.14□□□□□ -2.59
SCN1A-208ENST00000625916 HCG22E2RYF7 251 aa-1.14□□□□□ -2.59
SCN1A-208ENST00000625916 NDUFB6O95139 128 aa-1.14□□□□□ -2.59
SCN1A-208ENST00000625916 IGLC6P0CF74 106 aa-1.14□□□□□ -2.59
SCN1A-208ENST00000625916 BAGE2Q86Y30 109 aa-1.14□□□□□ -2.59
SCN1A-208ENST00000625916 AMELXQ99217 191 aa-1.14□□□□□ -2.59
SCN1A-208ENST00000625916 POLA1P09884 1462 aaPredicted RBP-1.14□□□□□ -2.59
SCN1A-208ENST00000625916 OVOS2A0A0J9YW53 1432 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 OVOS2Q6IE36 1432 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 TET3O43151 1660 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 KIF21AQ7Z4S6 1674 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 ADGRB1O14514 1584 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 SYS1-DBNDD2H3BUS1 97 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 Q6AWC8 147 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 MAFIPQ8WZ33 124 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 AQP10Q96PS8 301 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 LENEPQ9Y5L5 61 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 FMN2Q9NZ56 1722 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 DISP2A7MBM2 1401 aa-1.15□□□□□ -2.59
SCN1A-208ENST00000625916 DOCK2Q92608 1830 aa-1.16□□□□□ -2.6
SCN1A-208ENST00000625916 F8VRH5 84 aa-1.16□□□□□ -2.6
SCN1A-208ENST00000625916 UQCR11O14957 56 aa-1.16□□□□□ -2.6
SCN1A-208ENST00000625916 LINC00694P0DN24 101 aa-1.16□□□□□ -2.6
SCN1A-208ENST00000625916 TTC9CQ8N5M4 171 aa-1.16□□□□□ -2.6
SCN1A-208ENST00000625916 KNDC1Q76NI1 1749 aa-1.16□□□□□ -2.6
SCN1A-208ENST00000625916 IFT140Q96RY7 1462 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 TRAV13-2A0A0B4J235 113 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 TRBV7-4A0A0J9YYF1 115 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 J3QR89 54 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 APOC3P02656 99 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 NBEAP1P0C6P0 100 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 ALX1Q15699 326 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 SCIMPQ6UWF3 145 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 TAC4Q86UU9 113 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 WFDC9Q8NEX5 89 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 S4R3F8 94 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 PATJQ8NI35 1801 aa-1.17□□□□□ -2.6
SCN1A-208ENST00000625916 ARHGEF12Q9NZN5 1544 aa-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 LINC00959A0A1B0GUT2 108 aa-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 IGLC7A0M8Q6 106 aa-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 CPSF4LA6NMK7 179 aaKnown RBP-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 NCR2O95944 276 aa-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 COX8AP10176 69 aa-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 NEFHP12036 1026 aa-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 TPPP2P59282 170 aa-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 AIF1LQ9BQI0 150 aa-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 LINC01558Q9Y6Z2 57 aa-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 ARAP2Q8WZ64 1704 aa-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 SHANK2Q9UPX8 1470 aa-1.18□□□□□ -2.6
SCN1A-208ENST00000625916 HMGXB3Q12766 1538 aa-1.19□□□□□ -2.6
SCN1A-208ENST00000625916 BTAF1O14981 1849 aa-1.19□□□□□ -2.6
SCN1A-208ENST00000625916 GNG14A0A1W2PPG7 69 aa-1.19□□□□□ -2.6
SCN1A-208ENST00000625916 IFNGP01579 166 aa-1.19□□□□□ -2.6
SCN1A-208ENST00000625916 SMIM3Q9BZL3 60 aa-1.19□□□□□ -2.6
SCN1A-208ENST00000625916 ZNF518AQ6AHZ1 1483 aa-1.19□□□□□ -2.6
SCN1A-208ENST00000625916 SLIT1O75093 1534 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 TULP4Q9NRJ4 1543 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 PPIP5K1Q6PFW1 1433 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 PIGBOS1A0A0B4J2F0 54 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 TSPAN19P0C672 248 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 C9orf62Q8N4C0 152 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 USMG5Q96IX5 58 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 SELENOSQ9BQE4 189 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 NDUFA4L2Q9NRX3 87 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 GSKIPQ9P0R6 139 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 MAGI2Q86UL8 1455 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 SPEF2Q9C093 1822 aa-1.2□□□□□ -2.6
SCN1A-208ENST00000625916 PRG4Q92954 1404 aaPredicted RBP-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 KIAA0556O60303 1618 aa-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 H3BNG1 76 aa-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 K7ERU9 68 aa-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 M0R2Z0 102 aa-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 ARPC5O15511 151 aa-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 GUCA1AP43080 201 aaPredicted RBP-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 C10orf113Q5VZT2 155 aa-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 KCNRGQ8N5I3 272 aa-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 TMEM263Q8WUH6 116 aaKnown RBP-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 NAA60Q9H7X0 242 aa-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 DYNLRB1Q9NP97 96 aa-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 NKTRP30414 1462 aaKnown RBP-1.21□□□□□ -2.6
SCN1A-208ENST00000625916 PSME4Q14997 1843 aa-1.22□□□□□ -2.6
SCN1A-208ENST00000625916 PHLPP1O60346 1717 aa-1.22□□□□□ -2.6
SCN1A-208ENST00000625916 H1FX-AS1Q4G0G2 97 aa-1.22□□□□□ -2.6
SCN1A-208ENST00000625916 RAPGEF6Q8TEU7 1601 aa-1.22□□□□□ -2.61
SCN1A-208ENST00000625916 RIMS1Q86UR5 1692 aaKnown RBP-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 FYCO1Q9BQS8 1478 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 PAPPA2Q9BXP8 1791 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 TRBV7-3A0A075B6L6 115 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 HMGN4O00479 90 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 SFT2D2O95562 160 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 FDCSPQ8NFU4 85 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 TSLPQ969D9 159 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 MGST2Q99735 147 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 TTTY10Q9BZA0 68 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 ADAMTS12P58397 1594 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 SETBP1Q9Y6X0 1596 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 PTPN23Q9H3S7 1636 aa-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 TROQ12816 1431 aaPredicted RBP-1.23□□□□□ -2.61
SCN1A-208ENST00000625916 MED14O60244 1454 aa-1.24□□□□□ -2.61
SCN1A-208ENST00000625916 ATP10BO94823 1461 aa-1.24□□□□□ -2.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms