RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TRAV10A0A0B4J240 114 aa6.4□□□□□ -1.39
VCL-206ENST00000623461 BBC3Q96PG8 261 aaPredicted RBP6.4□□□□□ -1.39
VCL-206ENST00000623461 A0A0J9YWU9 116 aa6.39□□□□□ -1.39
VCL-206ENST00000623461 CYSRT1A8MQ03 144 aa6.39□□□□□ -1.39
VCL-206ENST00000623461 C1orf137Q5JT78 98 aa6.39□□□□□ -1.39
VCL-206ENST00000623461 IGKV2-28A0A075B6P5 120 aa6.39□□□□□ -1.39
VCL-206ENST00000623461 IGKV2D-28P01615 120 aa6.39□□□□□ -1.39
VCL-206ENST00000623461 COL4A2P08572 1712 aa6.39□□□□□ -1.39
VCL-206ENST00000623461 LINC00337Q8N6G1 96 aa6.39□□□□□ -1.39
VCL-206ENST00000623461 EGFEM1PQ0D2K5 195 aa6.39□□□□□ -1.39
VCL-206ENST00000623461 DEFB131BA0A096LNP1 70 aa6.38□□□□□ -1.39
VCL-206ENST00000623461 DNAJC9-AS1A6NH13 148 aa6.38□□□□□ -1.39
VCL-206ENST00000623461 NUPR2A6NF83 97 aa6.38□□□□□ -1.39
VCL-206ENST00000623461 IGKV2-24A0A0C4DH68 120 aa6.37□□□□□ -1.39
VCL-206ENST00000623461 F8WDY8 70 aa6.37□□□□□ -1.39
VCL-206ENST00000623461 ZNF702PQ9H963 129 aa6.37□□□□□ -1.39
VCL-206ENST00000623461 C10orf25Q5T742 122 aa6.36□□□□□ -1.39
VCL-206ENST00000623461 F8P00451 2351 aa6.36□□□□□ -1.39
VCL-206ENST00000623461 NANOS2P60321 138 aaKnown RBP6.36□□□□□ -1.39
VCL-206ENST00000623461 UNQ6190/PRO20217Q6UXQ8 127 aa6.36□□□□□ -1.39
VCL-206ENST00000623461 MYO9AB2RTY4 2548 aa6.36□□□□□ -1.39
VCL-206ENST00000623461 H0Y9P7 68 aa6.36□□□□□ -1.39
VCL-206ENST00000623461 PRR3P79522 188 aaKnown RBP6.36□□□□□ -1.39
VCL-206ENST00000623461 IGLV5-45A0A087WSX0 123 aa6.35□□□□□ -1.39
VCL-206ENST00000623461 HCG22E2RYF7 251 aa6.35□□□□□ -1.39
VCL-206ENST00000623461 IGLV4-60A0A075B6I1 120 aa6.35□□□□□ -1.39
VCL-206ENST00000623461 PRM2P04554 102 aa6.35□□□□□ -1.39
VCL-206ENST00000623461 C10orf99Q6UWK7 81 aa6.35□□□□□ -1.39
VCL-206ENST00000623461 A0A1B0GUV1 79 aa6.35□□□□□ -1.39
VCL-206ENST00000623461 A0A1B0GW54 56 aa6.35□□□□□ -1.39
VCL-206ENST00000623461 A0A096LNI7 61 aa6.35□□□□□ -1.39
VCL-206ENST00000623461 LINC00315P59091 139 aa6.35□□□□□ -1.39
VCL-206ENST00000623461 NHLRC4P0CG21 123 aaPredicted RBP6.34□□□□□ -1.39
VCL-206ENST00000623461 LOC110117498A0A087WWA1 95 aa6.34□□□□□ -1.4
VCL-206ENST00000623461 IGHV4-31P0DP07 118 aa6.34□□□□□ -1.4
VCL-206ENST00000623461 FAM19A4Q96LR4 140 aa6.33□□□□□ -1.4
VCL-206ENST00000623461 Q6ZSN1 163 aa6.33□□□□□ -1.4
VCL-206ENST00000623461 Q8N2B8 174 aa6.33□□□□□ -1.4
VCL-206ENST00000623461 C9orf116Q5BN46 136 aaPredicted RBP6.33□□□□□ -1.4
VCL-206ENST00000623461 FAM218AQ96MZ4 157 aa6.32□□□□□ -1.4
VCL-206ENST00000623461 RPL37AP8A6NKH3 93 aa6.32□□□□□ -1.4
VCL-206ENST00000623461 SPATA3Q8NHX4 192 aa6.32□□□□□ -1.4
VCL-206ENST00000623461 FHL3Q13643 280 aa6.32□□□□□ -1.4
VCL-206ENST00000623461 ERC2-IT1O76042 136 aa6.32□□□□□ -1.4
VCL-206ENST00000623461 FN1P02751 2386 aaKnown RBP6.31□□□□□ -1.4
VCL-206ENST00000623461 FHL2Q14192 279 aa6.31□□□□□ -1.4
VCL-206ENST00000623461 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.31□□□□□ -1.4
VCL-206ENST00000623461 Q6ZQT0 140 aa6.31□□□□□ -1.4
VCL-206ENST00000623461 SMCR5Q8TEV8 140 aa6.31□□□□□ -1.4
VCL-206ENST00000623461 H3BPC8 53 aa6.3□□□□□ -1.4
VCL-206ENST00000623461 LINC00482Q8N8I6 264 aa6.3□□□□□ -1.4
VCL-206ENST00000623461 SMIM29Q86T20 159 aa6.3□□□□□ -1.4
VCL-206ENST00000623461 EDN2P20800 178 aa6.3□□□□□ -1.4
VCL-206ENST00000623461 LY6G6CO95867 125 aa6.29□□□□□ -1.4
VCL-206ENST00000623461 ODF3L2Q3SX64 289 aa6.29□□□□□ -1.4
VCL-206ENST00000623461 KPRPQ5T749 579 aaPredicted RBP6.29□□□□□ -1.4
VCL-206ENST00000623461 REG3GQ6UW15 175 aa6.29□□□□□ -1.4
VCL-206ENST00000623461 C6orf223Q8N319 242 aa6.29□□□□□ -1.4
VCL-206ENST00000623461 C2orf48Q96LS8 159 aa6.29□□□□□ -1.4
VCL-206ENST00000623461 LITAFQ99732 161 aa6.28□□□□□ -1.4
VCL-206ENST00000623461 C18orf65Q6ZTR6 163 aa6.28□□□□□ -1.4
VCL-206ENST00000623461 INAFM1C9JVW0 142 aa6.28□□□□□ -1.4
VCL-206ENST00000623461 C1orf64Q8NEQ6 169 aa6.28□□□□□ -1.4
VCL-206ENST00000623461 WIPF1O43516 503 aa6.27□□□□□ -1.41
VCL-206ENST00000623461 IGHV3OR16-9A0A0B4J2B5 98 aa6.27□□□□□ -1.41
VCL-206ENST00000623461 C19orf84I3L1E1 186 aa6.27□□□□□ -1.41
VCL-206ENST00000623461 PCOTHQ58A44 107 aa6.26□□□□□ -1.41
VCL-206ENST00000623461 VPREB1P12018 145 aa6.26□□□□□ -1.41
VCL-206ENST00000623461 LINC01006Q8NI28 216 aa6.26□□□□□ -1.41
VCL-206ENST00000623461 ACANP16112 2415 aa6.26□□□□□ -1.41
VCL-206ENST00000623461 C2CD3Q4AC94 2353 aa6.25□□□□□ -1.41
VCL-206ENST00000623461 TM2D3Q9BRN9 247 aa6.25□□□□□ -1.41
VCL-206ENST00000623461 IGHV4-30-4P0DP06 118 aa6.25□□□□□ -1.41
VCL-206ENST00000623461 KLKP1Q107X0 134 aa6.24□□□□□ -1.41
VCL-206ENST00000623461 C11orf72Q8NBR9 251 aa6.24□□□□□ -1.41
VCL-206ENST00000623461 A0A087WSZ3 146 aa6.24□□□□□ -1.41
VCL-206ENST00000623461 A8MTW9 85 aa6.24□□□□□ -1.41
VCL-206ENST00000623461 SPINK6Q6UWN8 80 aa6.24□□□□□ -1.41
VCL-206ENST00000623461 TP53AIP1Q9HCN2 124 aa6.24□□□□□ -1.41
VCL-206ENST00000623461 NAV2Q8IVL1 2488 aa6.24□□□□□ -1.41
VCL-206ENST00000623461 CYP4F30PQ9H0H9 118 aa6.24□□□□□ -1.41
VCL-206ENST00000623461 CD164Q04900 197 aa6.24□□□□□ -1.41
VCL-206ENST00000623461 SERTAD4-AS1Q5TG53 156 aa6.24□□□□□ -1.41
VCL-206ENST00000623461 Q9BRP9 147 aa6.24□□□□□ -1.41
VCL-206ENST00000623461 COL27A1Q8IZC6 1860 aaPredicted RBP6.23□□□□□ -1.41
VCL-206ENST00000623461 IGLV9-49A0A0B4J1Y8 123 aa6.23□□□□□ -1.41
VCL-206ENST00000623461 LY6G6DO95868 133 aa6.23□□□□□ -1.41
VCL-206ENST00000623461 ELOF1P60002 83 aaKnown RBP6.22□□□□□ -1.41
VCL-206ENST00000623461 KIAA0087Q14695 138 aa6.22□□□□□ -1.41
VCL-206ENST00000623461 SPAG11AQ6PDA7 123 aa6.22□□□□□ -1.41
VCL-206ENST00000623461 LINC00336Q6ZUF6 198 aa6.22□□□□□ -1.41
VCL-206ENST00000623461 IGLV1-51P01701 117 aa6.21□□□□□ -1.42
VCL-206ENST00000623461 IGHV6-1A0A0B4J1U7 121 aa6.21□□□□□ -1.42
VCL-206ENST00000623461 PLA2G2AP14555 144 aa6.21□□□□□ -1.42
VCL-206ENST00000623461 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.2□□□□□ -1.42
VCL-206ENST00000623461 TLN2Q9Y4G6 2542 aa6.2□□□□□ -1.42
VCL-206ENST00000623461 USP9XQ93008 2570 aaPredicted RBP6.2□□□□□ -1.42
VCL-206ENST00000623461 LINC01600Q96MT4 127 aa6.2□□□□□ -1.42
VCL-206ENST00000623461 IGLV5-52A0A0A0MRZ9 124 aa6.19□□□□□ -1.42
VCL-206ENST00000623461 Q6ZTC4 211 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms