RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 GTSF1LQ9H1H1 148 aa5.16□□□□□ -1.58
CLK1-215ENST00000621181 IGHV3-73A0A0B4J1V6 119 aa5.16□□□□□ -1.58
CLK1-215ENST00000621181 TSPEAR-AS2P59090 65 aa5.16□□□□□ -1.58
CLK1-215ENST00000621181 PAPPA-AS1Q5QFB9 102 aa5.16□□□□□ -1.58
CLK1-215ENST00000621181 ATP6V0E2Q8NHE4 81 aa5.16□□□□□ -1.58
CLK1-215ENST00000621181 FAM104AQ969W3 186 aa5.16□□□□□ -1.58
CLK1-215ENST00000621181 VPS25Q9BRG1 176 aa5.16□□□□□ -1.58
CLK1-215ENST00000621181 TRBV6-4A0A1B0GX49 114 aa5.15□□□□□ -1.59
CLK1-215ENST00000621181 ZNF815PA8K554 130 aa5.15□□□□□ -1.59
CLK1-215ENST00000621181 SPANXB1Q9NS25 103 aaPredicted RBP5.15□□□□□ -1.59
CLK1-215ENST00000621181 RS1O15537 224 aa5.14□□□□□ -1.59
CLK1-215ENST00000621181 CIDEAO60543 219 aa5.14□□□□□ -1.59
CLK1-215ENST00000621181 CFAP126Q5VTH2 177 aa5.14□□□□□ -1.59
CLK1-215ENST00000621181 C20orf203Q8NBC4 194 aa5.14□□□□□ -1.59
CLK1-215ENST00000621181 KIR2DL4Q99706 377 aa5.14□□□□□ -1.59
CLK1-215ENST00000621181 F8W1H4 67 aa5.13□□□□□ -1.59
CLK1-215ENST00000621181 DAZ4Q86SG3 579 aaKnown RBP5.13□□□□□ -1.59
CLK1-215ENST00000621181 CIRBP-AS1Q8TBR5 109 aa5.13□□□□□ -1.59
CLK1-215ENST00000621181 PTH2Q96A98 100 aa5.13□□□□□ -1.59
CLK1-215ENST00000621181 KRTAP4-8Q9BYQ9 185 aa5.13□□□□□ -1.59
CLK1-215ENST00000621181 DAZ3Q9NR90 486 aaKnown RBP5.13□□□□□ -1.59
CLK1-215ENST00000621181 F5H697 171 aa5.13□□□□□ -1.59
CLK1-215ENST00000621181 KRTAP10-4P60372 401 aaPredicted RBP5.13□□□□□ -1.59
CLK1-215ENST00000621181 UBE2D3P61077 147 aa5.13□□□□□ -1.59
CLK1-215ENST00000621181 UBE2D2P62837 147 aa5.13□□□□□ -1.59
CLK1-215ENST00000621181 RMI2Q96E14 147 aa5.13□□□□□ -1.59
CLK1-215ENST00000621181 OPRPNQ99935 248 aaPredicted RBP5.13□□□□□ -1.59
CLK1-215ENST00000621181 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.13□□□□□ -1.59
CLK1-215ENST00000621181 UBR4Q5T4S7 5183 aa5.12□□□□□ -1.59
CLK1-215ENST00000621181 TMEM223A0PJW6 202 aa5.12□□□□□ -1.59
CLK1-215ENST00000621181 H3BMG7 143 aa5.12□□□□□ -1.59
CLK1-215ENST00000621181 I3L3M4 83 aa5.12□□□□□ -1.59
CLK1-215ENST00000621181 HERVK_113P61574 105 aa5.12□□□□□ -1.59
CLK1-215ENST00000621181 PIK3CD-AS1Q5SR53 167 aa5.12□□□□□ -1.59
CLK1-215ENST00000621181 IGLV4-3A0A075B6K6 122 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 IGKV2D-24A0A075B6R9 120 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 GAGE12JA6NER3 117 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 TSPAN13O95857 204 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 GAGE4Q13068 117 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 GAGE5Q13069 117 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 ZNF56Q15929 161 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 GAGE13Q4V321 117 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 FAM74A4Q5TZK3 123 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 PYGO1Q9Y3Y4 419 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 J3QQQ9 107 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 LEPROTO15243 131 aa5.11□□□□□ -1.59
CLK1-215ENST00000621181 ZNF22P17026 224 aaPredicted RBP5.11□□□□□ -1.59
CLK1-215ENST00000621181 CFC1BP0CG36 223 aa5.1□□□□□ -1.59
CLK1-215ENST00000621181 CFC1P0CG37 223 aa5.1□□□□□ -1.59
CLK1-215ENST00000621181 RPL37AP61513 92 aaKnown RBP5.1□□□□□ -1.59
CLK1-215ENST00000621181 COTL1Q14019 142 aa5.1□□□□□ -1.59
CLK1-215ENST00000621181 SCGB1D4Q6XE38 83 aa5.1□□□□□ -1.59
CLK1-215ENST00000621181 Q9UF83 564 aa5.1□□□□□ -1.59
CLK1-215ENST00000621181 KLK12Q9UKR0 248 aa5.1□□□□□ -1.59
CLK1-215ENST00000621181 LRP1Q07954 4544 aaKnown RBP5.1□□□□□ -1.59
CLK1-215ENST00000621181 RHODO00212 210 aa5.09□□□□□ -1.59
CLK1-215ENST00000621181 MRPS36P82909 103 aaKnown RBP5.09□□□□□ -1.59
CLK1-215ENST00000621181 RPL24P83731 157 aaKnown RBP5.09□□□□□ -1.59
CLK1-215ENST00000621181 TMEM170BQ5T4T1 132 aa5.09□□□□□ -1.59
CLK1-215ENST00000621181 UBE2WQ96B02 151 aa5.09□□□□□ -1.59
CLK1-215ENST00000621181 DNAJC30Q96LL9 226 aa5.09□□□□□ -1.59
CLK1-215ENST00000621181 A0A0J9YXV3 536 aa5.09□□□□□ -1.6
CLK1-215ENST00000621181 A8MWV9 139 aa5.09□□□□□ -1.6
CLK1-215ENST00000621181 LINC00694P0DN24 101 aa5.09□□□□□ -1.6
CLK1-215ENST00000621181 SRSF9Q13242 221 aaKnown RBP eCLIP5.09□□□□□ -1.6
CLK1-215ENST00000621181 ETDBQ3ZM63 59 aa5.09□□□□□ -1.6
CLK1-215ENST00000621181 C14orf177Q52M58 125 aa5.09□□□□□ -1.6
CLK1-215ENST00000621181 LITAFQ99732 161 aa5.09□□□□□ -1.6
CLK1-215ENST00000621181 CHCHD7Q9BUK0 85 aa5.09□□□□□ -1.6
CLK1-215ENST00000621181 HMCN2Q8NDA2 5059 aa5.07□□□□□ -1.6
CLK1-215ENST00000621181 LGALS3P17931 250 aaKnown RBP5.07□□□□□ -1.6
CLK1-215ENST00000621181 C1orf43Q9BWL3 253 aa5.07□□□□□ -1.6
CLK1-215ENST00000621181 VCX2Q9H322 139 aa5.07□□□□□ -1.6
CLK1-215ENST00000621181 A0A0B4J2C4 111 aa5.07□□□□□ -1.6
CLK1-215ENST00000621181 TCL1BO95988 128 aa5.07□□□□□ -1.6
CLK1-215ENST00000621181 MTURNQ8N3F0 131 aa5.07□□□□□ -1.6
CLK1-215ENST00000621181 LINC01600Q96MT4 127 aa5.07□□□□□ -1.6
CLK1-215ENST00000621181 KRTAP9-2Q9BYQ4 174 aa5.07□□□□□ -1.6
CLK1-215ENST00000621181 UBE2D4Q9Y2X8 147 aa5.07□□□□□ -1.6
CLK1-215ENST00000621181 A0A0J9YXY3 114 aa5.06□□□□□ -1.6
CLK1-215ENST00000621181 A4D1N5 150 aa5.06□□□□□ -1.6
CLK1-215ENST00000621181 GAGE12HA6NDE8 117 aa5.06□□□□□ -1.6
CLK1-215ENST00000621181 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.06□□□□□ -1.6
CLK1-215ENST00000621181 TMEM238C9JI98 176 aa5.06□□□□□ -1.6
CLK1-215ENST00000621181 APOMO95445 188 aa5.06□□□□□ -1.6
CLK1-215ENST00000621181 SPANXA1Q9NS26 97 aa5.06□□□□□ -1.6
CLK1-215ENST00000621181 PRO1854Q9UHT4 67 aa5.06□□□□□ -1.6
CLK1-215ENST00000621181 TRBV20-1A0A075B6N2 111 aa5.05□□□□□ -1.6
CLK1-215ENST00000621181 IGLV5-45A0A087WSX0 123 aa5.05□□□□□ -1.6
CLK1-215ENST00000621181 TINCRA0A1B0GVN0 87 aa5.05□□□□□ -1.6
CLK1-215ENST00000621181 M0QXV9 152 aa5.05□□□□□ -1.6
CLK1-215ENST00000621181 CRPP02741 224 aa5.05□□□□□ -1.6
CLK1-215ENST00000621181 FOXI1Q12951 378 aa5.05□□□□□ -1.6
CLK1-215ENST00000621181 MUSTN1Q8IVN3 82 aa5.05□□□□□ -1.6
CLK1-215ENST00000621181 CARD19Q96LW7 228 aa5.05□□□□□ -1.6
CLK1-215ENST00000621181 IGHV1-58A0A0C4DH39 117 aa5.04□□□□□ -1.6
CLK1-215ENST00000621181 KRTAP9-6A0A140TA67 174 aa5.04□□□□□ -1.6
CLK1-215ENST00000621181 TMEM262E9PQX1 116 aa5.04□□□□□ -1.6
CLK1-215ENST00000621181 J3QR89 54 aa5.04□□□□□ -1.6
CLK1-215ENST00000621181 SCGB1A1P11684 91 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms