RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 PCP2Q8IVA1 136 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 PLEKHB2Q96CS7 222 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 MIEN1Q9BRT3 115 aa7.59□□□□□ -1.19
LINC00539-204ENST00000608957 A0A087WZ39 114 aa7.58□□□□□ -1.2
LINC00539-204ENST00000608957 IGLV5-52A0A0A0MRZ9 124 aa7.58□□□□□ -1.2
LINC00539-204ENST00000608957 TRAV8-3A0A0A6YYJ7 113 aa7.58□□□□□ -1.2
LINC00539-204ENST00000608957 IGLV5-39A0A0G2JS06 123 aa7.58□□□□□ -1.2
LINC00539-204ENST00000608957 J3QQQ9 107 aa7.58□□□□□ -1.2
LINC00539-204ENST00000608957 DLEU1O43261 78 aa7.58□□□□□ -1.2
LINC00539-204ENST00000608957 LGALS3P17931 250 aaKnown RBP7.58□□□□□ -1.2
LINC00539-204ENST00000608957 TSPEAR-AS2P59090 65 aa7.58□□□□□ -1.2
LINC00539-204ENST00000608957 BOD1L2Q8IYS8 172 aa7.58□□□□□ -1.2
LINC00539-204ENST00000608957 NTN5Q8WTR8 489 aaPredicted RBP7.58□□□□□ -1.2
LINC00539-204ENST00000608957 TM2D2Q9BX73 214 aa7.58□□□□□ -1.2
LINC00539-204ENST00000608957 TP73-AS1Q9UF72 201 aa7.58□□□□□ -1.2
LINC00539-204ENST00000608957 VPS13BQ7Z7G8 4022 aa7.58□□□□□ -1.2
LINC00539-204ENST00000608957 DDTP30046 118 aa7.57□□□□□ -1.2
LINC00539-204ENST00000608957 C5orf38Q86SI9 138 aa7.57□□□□□ -1.2
LINC00539-204ENST00000608957 LINC01561Q8N1V8 128 aa7.57□□□□□ -1.2
LINC00539-204ENST00000608957 TTTY13Q9BZ97 58 aa7.57□□□□□ -1.2
LINC00539-204ENST00000608957 FAM30AQ9NZY2 134 aa7.57□□□□□ -1.2
LINC00539-204ENST00000608957 GAGE12HA6NDE8 117 aa7.56□□□□□ -1.2
LINC00539-204ENST00000608957 COX7A2LO14548 114 aa7.56□□□□□ -1.2
LINC00539-204ENST00000608957 HNRNPA3P51991 378 aaKnown RBP7.56□□□□□ -1.2
LINC00539-204ENST00000608957 FOXI1Q12951 378 aa7.56□□□□□ -1.2
LINC00539-204ENST00000608957 FAT1Q14517 4588 aa7.55□□□□□ -1.2
LINC00539-204ENST00000608957 IGKV2D-24A0A075B6R9 120 aa7.55□□□□□ -1.2
LINC00539-204ENST00000608957 MYMXA0A1B0GTQ4 84 aa7.55□□□□□ -1.2
LINC00539-204ENST00000608957 ZNF815PA8K554 130 aa7.55□□□□□ -1.2
LINC00539-204ENST00000608957 C1orf43Q9BWL3 253 aa7.55□□□□□ -1.2
LINC00539-204ENST00000608957 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.54□□□□□ -1.2
LINC00539-204ENST00000608957 SMR3BP02814 79 aaPredicted RBP7.54□□□□□ -1.2
LINC00539-204ENST00000608957 LCE2DQ5TA82 110 aaPredicted RBP7.54□□□□□ -1.2
LINC00539-204ENST00000608957 C2orf91Q6ZV80 131 aa7.54□□□□□ -1.2
LINC00539-204ENST00000608957 MALP21145 153 aa7.53□□□□□ -1.2
LINC00539-204ENST00000608957 LINC01620Q4KN68 170 aa7.53□□□□□ -1.2
LINC00539-204ENST00000608957 KRTAP26-1Q6PEX3 210 aa7.53□□□□□ -1.2
LINC00539-204ENST00000608957 COX7B2Q8TF08 81 aa7.53□□□□□ -1.2
LINC00539-204ENST00000608957 RMI2Q96E14 147 aa7.53□□□□□ -1.2
LINC00539-204ENST00000608957 NDUFA12Q9UI09 145 aa7.53□□□□□ -1.2
LINC00539-204ENST00000608957 EPM2AB3EWF7 344 aa7.52□□□□□ -1.21
LINC00539-204ENST00000608957 NDUFA1O15239 70 aa7.52□□□□□ -1.21
LINC00539-204ENST00000608957 APOMO95445 188 aa7.52□□□□□ -1.21
LINC00539-204ENST00000608957 Q5VSD8 79 aa7.52□□□□□ -1.21
LINC00539-204ENST00000608957 Q6ZSA8 131 aa7.52□□□□□ -1.21
LINC00539-204ENST00000608957 TOMM7Q9P0U1 55 aa7.52□□□□□ -1.21
LINC00539-204ENST00000608957 HIGD1BQ9P298 99 aa7.52□□□□□ -1.21
LINC00539-204ENST00000608957 COX11Q9Y6N1 276 aa7.52□□□□□ -1.21
LINC00539-204ENST00000608957 SCGB1D4Q6XE38 83 aa7.51□□□□□ -1.21
LINC00539-204ENST00000608957 ORAOV1Q8WV07 137 aa7.51□□□□□ -1.21
LINC00539-204ENST00000608957 LINC00587B1AMM8 73 aa7.5□□□□□ -1.21
LINC00539-204ENST00000608957 PRSS2P07478 247 aa7.5□□□□□ -1.21
LINC00539-204ENST00000608957 CTAG1AP78358 180 aa7.5□□□□□ -1.21
LINC00539-204ENST00000608957 Q8IZM0 81 aa7.5□□□□□ -1.21
LINC00539-204ENST00000608957 ZNF625Q96I27 306 aaPredicted RBP7.5□□□□□ -1.21
LINC00539-204ENST00000608957 A0A0J9YXY3 114 aa7.49□□□□□ -1.21
LINC00539-204ENST00000608957 SPAG11BQ08648 103 aa7.49□□□□□ -1.21
LINC00539-204ENST00000608957 SFTA2Q6UW10 78 aa7.49□□□□□ -1.21
LINC00539-204ENST00000608957 CXCL5P42830 114 aa7.48□□□□□ -1.21
LINC00539-204ENST00000608957 HERV-K104P63124 156 aa7.48□□□□□ -1.21
LINC00539-204ENST00000608957 C6orf226Q5I0X4 101 aa7.48□□□□□ -1.21
LINC00539-204ENST00000608957 CFAP161Q6P656 301 aa7.48□□□□□ -1.21
LINC00539-204ENST00000608957 FLG2Q5D862 2391 aaPredicted RBP7.48□□□□□ -1.21
LINC00539-204ENST00000608957 USP17L23D6RBM5 183 aa7.47□□□□□ -1.21
LINC00539-204ENST00000608957 HSD52Q0P140 79 aa7.47□□□□□ -1.21
LINC00539-204ENST00000608957 KIAA0087Q14695 138 aa7.47□□□□□ -1.21
LINC00539-204ENST00000608957 TMEM238C9JI98 176 aa7.46□□□□□ -1.22
LINC00539-204ENST00000608957 INAFM2P0DMQ5 153 aa7.46□□□□□ -1.22
LINC00539-204ENST00000608957 CKS1BP61024 79 aa7.46□□□□□ -1.22
LINC00539-204ENST00000608957 C15orf56Q8N910 161 aa7.46□□□□□ -1.22
LINC00539-204ENST00000608957 SPANXB1Q9NS25 103 aaPredicted RBP7.46□□□□□ -1.22
LINC00539-204ENST00000608957 M0R143 59 aa7.45□□□□□ -1.22
LINC00539-204ENST00000608957 TIMM17BO60830 172 aa7.45□□□□□ -1.22
LINC00539-204ENST00000608957 TAL2Q16559 108 aa7.45□□□□□ -1.22
LINC00539-204ENST00000608957 MEIG1Q5JSS6 88 aa7.45□□□□□ -1.22
LINC00539-204ENST00000608957 SCXQ7RTU7 201 aa7.45□□□□□ -1.22
LINC00539-204ENST00000608957 HIST1H4GQ99525 98 aa7.45□□□□□ -1.22
LINC00539-204ENST00000608957 GVQW2A0A096LPI5 108 aaPredicted RBP7.44□□□□□ -1.22
LINC00539-204ENST00000608957 ZNF561-AS1K7EIQ3 104 aa7.44□□□□□ -1.22
LINC00539-204ENST00000608957 CIRBPQ14011 172 aaKnown RBP7.44□□□□□ -1.22
LINC00539-204ENST00000608957 HIGD2BQ4VC39 106 aa7.44□□□□□ -1.22
LINC00539-204ENST00000608957 C2orf82Q6UX34 121 aa7.44□□□□□ -1.22
LINC00539-204ENST00000608957 LITAFQ99732 161 aa7.44□□□□□ -1.22
LINC00539-204ENST00000608957 HINT1P49773 126 aaPredicted RBP7.43□□□□□ -1.22
LINC00539-204ENST00000608957 SRSF9Q13242 221 aaKnown RBP eCLIP7.43□□□□□ -1.22
LINC00539-204ENST00000608957 C14orf177Q52M58 125 aa7.43□□□□□ -1.22
LINC00539-204ENST00000608957 BVES-AS1Q5T3Y7 98 aa7.43□□□□□ -1.22
LINC00539-204ENST00000608957 LINC00526Q96FQ7 95 aa7.43□□□□□ -1.22
LINC00539-204ENST00000608957 SPANXDQ9BXN6 97 aa7.43□□□□□ -1.22
LINC00539-204ENST00000608957 SPANXCQ9NY87 97 aa7.43□□□□□ -1.22
LINC00539-204ENST00000608957 FAM229AH3BQW9 127 aa7.42□□□□□ -1.22
LINC00539-204ENST00000608957 SMIM13P0DJ93 91 aa7.42□□□□□ -1.22
LINC00539-204ENST00000608957 BATFQ16520 125 aa7.42□□□□□ -1.22
LINC00539-204ENST00000608957 CEND1Q8N111 149 aa7.42□□□□□ -1.22
LINC00539-204ENST00000608957 LINC00528Q8N1L1 170 aa7.42□□□□□ -1.22
LINC00539-204ENST00000608957 SNHG12Q9BXW3 62 aa7.42□□□□□ -1.22
LINC00539-204ENST00000608957 ERG28Q9UKR5 140 aa7.42□□□□□ -1.22
LINC00539-204ENST00000608957 SRRM2Q9UQ35 2752 aaKnown RBP7.41□□□□□ -1.22
LINC00539-204ENST00000608957 F8WDY8 70 aa7.41□□□□□ -1.22
LINC00539-204ENST00000608957 SLPIP03973 132 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms