RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 UNQ6190/PRO20217Q6UXQ8 127 aa12.92□□□□□ -0.34
SHKBP1-222ENST00000600320 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-222ENST00000600320 NDUFA1O15239 70 aa12.9□□□□□ -0.34
SHKBP1-222ENST00000600320 C6orf226Q5I0X4 101 aa12.9□□□□□ -0.34
SHKBP1-222ENST00000600320 F8WDY8 70 aa12.89□□□□□ -0.35
SHKBP1-222ENST00000600320 C6orf48Q9UBA6 75 aa12.89□□□□□ -0.35
SHKBP1-222ENST00000600320 C20orf202A1L168 122 aa12.88□□□□□ -0.35
SHKBP1-222ENST00000600320 CKS1BP61024 79 aa12.87□□□□□ -0.35
SHKBP1-222ENST00000600320 SDIM1Q6ZPB5 146 aa12.87□□□□□ -0.35
SHKBP1-222ENST00000600320 LRP1BQ9NZR2 4599 aa12.87□□□□□ -0.35
SHKBP1-222ENST00000600320 ATOH7Q8N100 152 aa12.86□□□□□ -0.35
SHKBP1-222ENST00000600320 KRTAP17-1Q9BYP8 105 aa12.86□□□□□ -0.35
SHKBP1-222ENST00000600320 PKHD1P08F94 4074 aa12.86□□□□□ -0.35
SHKBP1-222ENST00000600320 CXCL5P42830 114 aa12.85□□□□□ -0.35
SHKBP1-222ENST00000600320 TSPEAR-AS2P59090 65 aa12.85□□□□□ -0.35
SHKBP1-222ENST00000600320 STPG4Q8N801 248 aa12.85□□□□□ -0.35
SHKBP1-222ENST00000600320 HERVK_113P61574 105 aa12.84□□□□□ -0.35
SHKBP1-222ENST00000600320 RNF151Q2KHN1 245 aa12.84□□□□□ -0.35
SHKBP1-222ENST00000600320 FAM30AQ9NZY2 134 aa12.84□□□□□ -0.35
SHKBP1-222ENST00000600320 HERC2O95714 4834 aa12.83□□□□□ -0.36
SHKBP1-222ENST00000600320 LEPROTO15243 131 aa12.83□□□□□ -0.36
SHKBP1-222ENST00000600320 C9orf116Q5BN46 136 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-222ENST00000600320 TRBV30A0A0K0K1B3 111 aa12.82□□□□□ -0.36
SHKBP1-222ENST00000600320 E9PLD3 99 aa12.81□□□□□ -0.36
SHKBP1-222ENST00000600320 PANO1I0J062 215 aa12.81□□□□□ -0.36
SHKBP1-222ENST00000600320 CHTF8P0CG12 524 aa12.81□□□□□ -0.36
SHKBP1-222ENST00000600320 PLEKHB2Q96CS7 222 aa12.81□□□□□ -0.36
SHKBP1-222ENST00000600320 ZNF625Q96I27 306 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-222ENST00000600320 DNAH8Q96JB1 4490 aa12.81□□□□□ -0.36
SHKBP1-222ENST00000600320 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-222ENST00000600320 A0A096LNI7 61 aa12.79□□□□□ -0.36
SHKBP1-222ENST00000600320 LOC107984640A0A0U1RRK4 108 aa12.79□□□□□ -0.36
SHKBP1-222ENST00000600320 ANKRD39Q53RE8 183 aa12.79□□□□□ -0.36
SHKBP1-222ENST00000600320 Q6ZSA8 131 aa12.79□□□□□ -0.36
SHKBP1-222ENST00000600320 IGKV2D-26A0A0A0MRZ7 120 aa12.78□□□□□ -0.36
SHKBP1-222ENST00000600320 J3QQQ9 107 aa12.78□□□□□ -0.36
SHKBP1-222ENST00000600320 SCGB1D1O95968 90 aa12.78□□□□□ -0.36
SHKBP1-222ENST00000600320 MAJINQ3KP22 176 aa12.78□□□□□ -0.36
SHKBP1-222ENST00000600320 TLX1NBP0CAT3 122 aa12.77□□□□□ -0.37
SHKBP1-222ENST00000600320 AKR1D1P51857 326 aa12.77□□□□□ -0.37
SHKBP1-222ENST00000600320 GAGE2BQ13066 116 aa12.77□□□□□ -0.37
SHKBP1-222ENST00000600320 NDUFA12Q9UI09 145 aa12.77□□□□□ -0.37
SHKBP1-222ENST00000600320 IGKV2-24A0A0C4DH68 120 aa12.76□□□□□ -0.37
SHKBP1-222ENST00000600320 HAMPP81172 84 aa12.76□□□□□ -0.37
SHKBP1-222ENST00000600320 RPL18AQ02543 176 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-222ENST00000600320 Q6ZRP5 223 aa12.76□□□□□ -0.37
SHKBP1-222ENST00000600320 LGALS3P17931 250 aaKnown RBP12.75□□□□□ -0.37
SHKBP1-222ENST00000600320 PTTG1IPP53801 180 aa12.75□□□□□ -0.37
SHKBP1-222ENST00000600320 NDUFC2-KCTD14E9PQ53 114 aa12.74□□□□□ -0.37
SHKBP1-222ENST00000600320 CIRBPQ14011 172 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-222ENST00000600320 JOSD1Q15040 202 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-222ENST00000600320 SPACA4Q8TDM5 124 aa12.74□□□□□ -0.37
SHKBP1-222ENST00000600320 XGP55808 180 aa12.73□□□□□ -0.37
SHKBP1-222ENST00000600320 GAGE2EQ4V326 116 aa12.73□□□□□ -0.37
SHKBP1-222ENST00000600320 SFTA2Q6UW10 78 aa12.73□□□□□ -0.37
SHKBP1-222ENST00000600320 TTTY13Q9BZ97 58 aa12.73□□□□□ -0.37
SHKBP1-222ENST00000600320 GAGE2DQ9UEU5 116 aa12.73□□□□□ -0.37
SHKBP1-222ENST00000600320 ERG28Q9UKR5 140 aa12.73□□□□□ -0.37
SHKBP1-222ENST00000600320 PKIGQ9Y2B9 76 aa12.73□□□□□ -0.37
SHKBP1-222ENST00000600320 APOBP04114 4563 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-222ENST00000600320 MYMXA0A1B0GTQ4 84 aa12.72□□□□□ -0.37
SHKBP1-222ENST00000600320 PFN2P35080 140 aa12.71□□□□□ -0.37
SHKBP1-222ENST00000600320 NMUP48645 174 aa12.7□□□□□ -0.38
SHKBP1-222ENST00000600320 HERV-K104P63124 156 aa12.7□□□□□ -0.38
SHKBP1-222ENST00000600320 PYY3Q5JQD4 70 aa12.7□□□□□ -0.38
SHKBP1-222ENST00000600320 SCXQ7RTU7 201 aa12.7□□□□□ -0.38
SHKBP1-222ENST00000600320 PCLOQ9Y6V0 5065 aa12.69□□□□□ -0.38
SHKBP1-222ENST00000600320 KIAA1109Q2LD37 5005 aa12.68□□□□□ -0.38
SHKBP1-222ENST00000600320 A0A087WYN8 130 aa12.68□□□□□ -0.38
SHKBP1-222ENST00000600320 A0A0U1RRA0 63 aa12.68□□□□□ -0.38
SHKBP1-222ENST00000600320 MEIG1Q5JSS6 88 aa12.68□□□□□ -0.38
SHKBP1-222ENST00000600320 C9orf129Q5T035 196 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-222ENST00000600320 CIRBP-AS1Q8TBR5 109 aa12.68□□□□□ -0.38
SHKBP1-222ENST00000600320 XAGE1AQ9HD64 81 aa12.68□□□□□ -0.38
SHKBP1-222ENST00000600320 HSBP1L1C9JCN9 74 aa12.67□□□□□ -0.38
SHKBP1-222ENST00000600320 CDK2AP2O75956 126 aa12.67□□□□□ -0.38
SHKBP1-222ENST00000600320 SMIM13P0DJ93 91 aa12.67□□□□□ -0.38
SHKBP1-222ENST00000600320 A0A1W2PNN7 141 aa12.66□□□□□ -0.38
SHKBP1-222ENST00000600320 ZNF815PA8K554 130 aa12.66□□□□□ -0.38
SHKBP1-222ENST00000600320 PCP2Q8IVA1 136 aa12.66□□□□□ -0.38
SHKBP1-222ENST00000600320 DPH3Q96FX2 82 aa12.66□□□□□ -0.38
SHKBP1-222ENST00000600320 LINC00474Q9P2X8 69 aa12.66□□□□□ -0.38
SHKBP1-222ENST00000600320 A0A0J9YXY3 114 aa12.65□□□□□ -0.38
SHKBP1-222ENST00000600320 LINC00158P58513 81 aa12.65□□□□□ -0.38
SHKBP1-222ENST00000600320 COX17Q14061 63 aa12.65□□□□□ -0.38
SHKBP1-222ENST00000600320 FAM168BA1KXE4 195 aa12.64□□□□□ -0.39
SHKBP1-222ENST00000600320 PLAC8Q9NZF1 115 aa12.64□□□□□ -0.39
SHKBP1-222ENST00000600320 KRTAP7-1Q8IUC3 87 aa12.63□□□□□ -0.39
SHKBP1-222ENST00000600320 SND1-IT1Q9HBX3 110 aa12.63□□□□□ -0.39
SHKBP1-222ENST00000600320 RYR1P21817 5038 aa12.61□□□□□ -0.39
SHKBP1-222ENST00000600320 EPM2AB3EWF7 344 aa12.61□□□□□ -0.39
SHKBP1-222ENST00000600320 MIR7-3HGQ8N6C7 128 aa12.61□□□□□ -0.39
SHKBP1-222ENST00000600320 PAM16Q9Y3D7 125 aa12.61□□□□□ -0.39
SHKBP1-222ENST00000600320 LINC00587B1AMM8 73 aa12.6□□□□□ -0.39
SHKBP1-222ENST00000600320 SERTAD4-AS1Q5TG53 156 aa12.6□□□□□ -0.39
SHKBP1-222ENST00000600320 DAND5Q8N907 189 aa12.6□□□□□ -0.39
SHKBP1-222ENST00000600320 LOC105371267A0A1B0GV96 52 aa12.59□□□□□ -0.39
SHKBP1-222ENST00000600320 ADAMTSL4-AS1Q5T5F5 129 aa12.59□□□□□ -0.39
SHKBP1-222ENST00000600320 FAM19A5Q7Z5A7 132 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-222ENST00000600320 LITAFQ99732 161 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms