RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 SRP19P09132 144 aaKnown RBP3.55□□□□□ -1.84
VRK3-220ENST00000600259 HBBP68871 147 aa3.55□□□□□ -1.84
VRK3-220ENST00000600259 RHEBQ15382 184 aa3.55□□□□□ -1.84
VRK3-220ENST00000600259 LINC01561Q8N1V8 128 aa3.55□□□□□ -1.84
VRK3-220ENST00000600259 SMIM7Q9BQ49 75 aa3.55□□□□□ -1.84
VRK3-220ENST00000600259 CTDSP1Q9GZU7 261 aa3.55□□□□□ -1.84
VRK3-220ENST00000600259 ANAPC11Q9NYG5 84 aa3.55□□□□□ -1.84
VRK3-220ENST00000600259 PYGO1Q9Y3Y4 419 aa3.55□□□□□ -1.84
VRK3-220ENST00000600259 IGLV4-3A0A075B6K6 122 aa3.54□□□□□ -1.84
VRK3-220ENST00000600259 SMIM27A0A1W2PRY6 76 aa3.54□□□□□ -1.84
VRK3-220ENST00000600259 IFITM10A6NMD0 228 aa3.54□□□□□ -1.84
VRK3-220ENST00000600259 LINC00587B1AMM8 73 aa3.54□□□□□ -1.84
VRK3-220ENST00000600259 TCAPO15273 167 aa3.54□□□□□ -1.84
VRK3-220ENST00000600259 NUPR1O60356 82 aa3.54□□□□□ -1.84
VRK3-220ENST00000600259 NPYP01303 97 aa3.54□□□□□ -1.84
VRK3-220ENST00000600259 CRYGAP11844 174 aa3.54□□□□□ -1.84
VRK3-220ENST00000600259 SNRPEP62304 92 aaKnown RBP3.54□□□□□ -1.84
VRK3-220ENST00000600259 SRSF3P84103 164 aaKnown RBP3.54□□□□□ -1.84
VRK3-220ENST00000600259 KRTAP13-1Q8IUC0 172 aa3.54□□□□□ -1.84
VRK3-220ENST00000600259 TYMSOSQ8TAI1 123 aa3.54□□□□□ -1.84
VRK3-220ENST00000600259 SMIM2Q9BVW6 85 aa3.54□□□□□ -1.84
VRK3-220ENST00000600259 TGIF2-C20orf24A0A0A6YYL0 155 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 A0A1B0GXF2 115 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 BCE1O60756 84 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 RAB5AP20339 215 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 CKS2P33552 79 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 CEBPGP53567 150 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 RPL23P62829 140 aaKnown RBP3.53□□□□□ -1.84
VRK3-220ENST00000600259 TPRXLQ17RH7 258 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 LBHQ53QV2 105 aaPredicted RBP3.53□□□□□ -1.84
VRK3-220ENST00000600259 ZC2HC1BQ5TFG8 222 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 LINC00173Q6ZV60 143 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 PACRGQ96M98 296 aaPredicted RBP3.53□□□□□ -1.84
VRK3-220ENST00000600259 YPEL4Q96NS1 127 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 RETNLBQ9BQ08 111 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 XAGE1AQ9HD64 81 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 TP73-AS1Q9UF72 201 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 NAT8BQ9UHF3 227 aa3.53□□□□□ -1.84
VRK3-220ENST00000600259 PRSS47A8MTI9 375 aa3.52□□□□□ -1.85
VRK3-220ENST00000600259 C9JQL5 133 aa3.52□□□□□ -1.85
VRK3-220ENST00000600259 D6R8Y8 96 aa3.52□□□□□ -1.85
VRK3-220ENST00000600259 RPL28P46779 137 aaKnown RBP3.52□□□□□ -1.85
VRK3-220ENST00000600259 FABP9Q0Z7S8 132 aa3.52□□□□□ -1.85
VRK3-220ENST00000600259 FAM19A3Q7Z5A8 133 aa3.52□□□□□ -1.85
VRK3-220ENST00000600259 LINC00167Q96N53 147 aa3.52□□□□□ -1.85
VRK3-220ENST00000600259 AMELXQ99217 191 aa3.52□□□□□ -1.85
VRK3-220ENST00000600259 EIF5A2Q9GZV4 153 aaKnown RBP3.52□□□□□ -1.85
VRK3-220ENST00000600259 IGLV7-46A0A075B6I9 117 aa3.51□□□□□ -1.85
VRK3-220ENST00000600259 A0A1B0GW15 77 aa3.51□□□□□ -1.85
VRK3-220ENST00000600259 C2orf66Q6UXQ4 117 aa3.51□□□□□ -1.85
VRK3-220ENST00000600259 Q6ZN92 141 aa3.51□□□□□ -1.85
VRK3-220ENST00000600259 MRPL55Q7Z7F7 128 aaKnown RBP3.51□□□□□ -1.85
VRK3-220ENST00000600259 TMEM141Q96I45 108 aa3.51□□□□□ -1.85
VRK3-220ENST00000600259 KRTAP4-1Q9BYQ7 146 aa3.51□□□□□ -1.85
VRK3-220ENST00000600259 IGIPA6NJ69 53 aa3.5□□□□□ -1.85
VRK3-220ENST00000600259 RPL37AP8A6NKH3 93 aa3.5□□□□□ -1.85
VRK3-220ENST00000600259 PPBPP02775 128 aa3.5□□□□□ -1.85
VRK3-220ENST00000600259 IFI27P40305 119 aaPredicted RBP3.5□□□□□ -1.85
VRK3-220ENST00000600259 FAM229BQ4G0N7 80 aa3.5□□□□□ -1.85
VRK3-220ENST00000600259 C6orf226Q5I0X4 101 aa3.5□□□□□ -1.85
VRK3-220ENST00000600259 TMEM136Q6ZRR5 245 aa3.5□□□□□ -1.85
VRK3-220ENST00000600259 Q8IZM0 81 aa3.5□□□□□ -1.85
VRK3-220ENST00000600259 LINC00304Q8N9R0 145 aa3.5□□□□□ -1.85
VRK3-220ENST00000600259 CDIP1Q9H305 208 aa3.5□□□□□ -1.85
VRK3-220ENST00000600259 RPS10P5Q9NQ39 176 aa3.5□□□□□ -1.85
VRK3-220ENST00000600259 CRCT1Q9UGL9 99 aa3.5□□□□□ -1.85
VRK3-220ENST00000600259 IGLV5-37A0A075B6J1 123 aa3.49□□□□□ -1.85
VRK3-220ENST00000600259 S100A2P29034 98 aa3.49□□□□□ -1.85
VRK3-220ENST00000600259 MRPL54Q6P161 138 aaKnown RBP3.49□□□□□ -1.85
VRK3-220ENST00000600259 TEX43Q6ZNM6 134 aa3.49□□□□□ -1.85
VRK3-220ENST00000600259 PRELID3AQ96N28 172 aa3.49□□□□□ -1.85
VRK3-220ENST00000600259 ALKBH7Q9BT30 221 aaPredicted RBP3.49□□□□□ -1.85
VRK3-220ENST00000600259 TOMM7Q9P0U1 55 aa3.49□□□□□ -1.85
VRK3-220ENST00000600259 CDKN2A-AS1Q9UH64 79 aa3.49□□□□□ -1.85
VRK3-220ENST00000600259 FSIP2Q5CZC0 6907 aa3.49□□□□□ -1.85
VRK3-220ENST00000600259 F8VRH5 84 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 PRSS2P07478 247 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 NPSP0C0P6 89 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 CKS1BP61024 79 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 PNRC1Q12796 327 aaPredicted RBP3.48□□□□□ -1.85
VRK3-220ENST00000600259 ADIRFQ15847 76 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 PYY3Q5JQD4 70 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 ORMDL3Q8N138 153 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 C2orf88Q9BSF0 95 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 KRTAP4-8Q9BYQ9 185 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 VCX2Q9H322 139 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 PPDPFQ9H3Y8 114 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 NAT8Q9UHE5 227 aa3.48□□□□□ -1.85
VRK3-220ENST00000600259 LOC389332A0A1B0GUA5 103 aa3.47□□□□□ -1.85
VRK3-220ENST00000600259 GAGE10A6NGK3 116 aa3.47□□□□□ -1.85
VRK3-220ENST00000600259 TSTD3H0UI37 97 aa3.47□□□□□ -1.85
VRK3-220ENST00000600259 ASB16-AS1Q495Z4 193 aa3.47□□□□□ -1.85
VRK3-220ENST00000600259 COA6Q5JTJ3 125 aaKnown RBP3.47□□□□□ -1.85
VRK3-220ENST00000600259 HIST3H2BBQ8N257 126 aa3.47□□□□□ -1.85
VRK3-220ENST00000600259 C3orf22Q8N5N4 141 aa3.47□□□□□ -1.85
VRK3-220ENST00000600259 Q8N8P6 123 aa3.47□□□□□ -1.85
VRK3-220ENST00000600259 PLEKHB2Q96CS7 222 aa3.47□□□□□ -1.85
VRK3-220ENST00000600259 C14orf144Q96I85 54 aa3.47□□□□□ -1.85
VRK3-220ENST00000600259 CYSLTR1Q9Y271 337 aa3.47□□□□□ -1.85
VRK3-220ENST00000600259 SMIM1B2RUZ4 78 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms