RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 A0A0J9YXY3 114 aa10.07□□□□□ -0.8
TRIM28-209ENST00000597423 LCE6AA0A183 80 aa10.07□□□□□ -0.8
TRIM28-209ENST00000597423 HIGD2BQ4VC39 106 aa10.07□□□□□ -0.8
TRIM28-209ENST00000597423 TMEM238C9JI98 176 aa10.06□□□□□ -0.8
TRIM28-209ENST00000597423 TIMM17BO60830 172 aa10.06□□□□□ -0.8
TRIM28-209ENST00000597423 GCSHP23434 173 aa10.06□□□□□ -0.8
TRIM28-209ENST00000597423 MEIG1Q5JSS6 88 aa10.06□□□□□ -0.8
TRIM28-209ENST00000597423 VPS13DQ5THJ4 4388 aa10.05□□□□□ -0.8
TRIM28-209ENST00000597423 DDTP30046 118 aa10.05□□□□□ -0.8
TRIM28-209ENST00000597423 Q6ZRN7 208 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-209ENST00000597423 TRBV30A0A0K0K1B3 111 aa10.04□□□□□ -0.8
TRIM28-209ENST00000597423 EREGO14944 169 aa10.04□□□□□ -0.8
TRIM28-209ENST00000597423 SYCNQ0VAF6 134 aa10.04□□□□□ -0.8
TRIM28-209ENST00000597423 SRSF9Q13242 221 aaKnown RBP eCLIP10.04□□□□□ -0.8
TRIM28-209ENST00000597423 COX17Q14061 63 aa10.04□□□□□ -0.8
TRIM28-209ENST00000597423 C2orf82Q6UX34 121 aa10.04□□□□□ -0.8
TRIM28-209ENST00000597423 UNQ6190/PRO20217Q6UXQ8 127 aa10.04□□□□□ -0.8
TRIM28-209ENST00000597423 Q6ZVH6 145 aa10.04□□□□□ -0.8
TRIM28-209ENST00000597423 COPS9Q8WXC6 57 aa10.04□□□□□ -0.8
TRIM28-209ENST00000597423 PCP4L1A6NKN8 68 aa10.03□□□□□ -0.8
TRIM28-209ENST00000597423 LECT2O14960 151 aa10.03□□□□□ -0.8
TRIM28-209ENST00000597423 TAL2Q16559 108 aa10.03□□□□□ -0.8
TRIM28-209ENST00000597423 LINC00526Q96FQ7 95 aa10.03□□□□□ -0.8
TRIM28-209ENST00000597423 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-209ENST00000597423 LINC00158P58513 81 aa10.02□□□□□ -0.81
TRIM28-209ENST00000597423 RNF151Q2KHN1 245 aa10.02□□□□□ -0.81
TRIM28-209ENST00000597423 HIST1H4GQ99525 98 aa10.02□□□□□ -0.81
TRIM28-209ENST00000597423 ERG28Q9UKR5 140 aa10.02□□□□□ -0.81
TRIM28-209ENST00000597423 LRCOL1A6NCL2 159 aa10.01□□□□□ -0.81
TRIM28-209ENST00000597423 C2orf91Q6ZV80 131 aa10.01□□□□□ -0.81
TRIM28-209ENST00000597423 CARD19Q96LW7 228 aa10.01□□□□□ -0.81
TRIM28-209ENST00000597423 SPANXB1Q9NS25 103 aaPredicted RBP10.01□□□□□ -0.81
TRIM28-209ENST00000597423 SMIM13P0DJ93 91 aa10□□□□□ -0.81
TRIM28-209ENST00000597423 HSD52Q0P140 79 aa10□□□□□ -0.81
TRIM28-209ENST00000597423 LYSTQ99698 3801 aa10□□□□□ -0.81
TRIM28-209ENST00000597423 ALMS1Q8TCU4 4167 aa10□□□□□ -0.81
TRIM28-209ENST00000597423 DNAH1Q9P2D7 4330 aa9.99□□□□□ -0.81
TRIM28-209ENST00000597423 A0A087WTM6 91 aa9.99□□□□□ -0.81
TRIM28-209ENST00000597423 IFITM1P13164 125 aa9.99□□□□□ -0.81
TRIM28-209ENST00000597423 PFN2P35080 140 aa9.99□□□□□ -0.81
TRIM28-209ENST00000597423 CTAG1AP78358 180 aa9.99□□□□□ -0.81
TRIM28-209ENST00000597423 C10orf25Q5T742 122 aa9.99□□□□□ -0.81
TRIM28-209ENST00000597423 Q6ZRU5 148 aa9.99□□□□□ -0.81
TRIM28-209ENST00000597423 SPANXDQ9BXN6 97 aa9.99□□□□□ -0.81
TRIM28-209ENST00000597423 SPANXCQ9NY87 97 aa9.99□□□□□ -0.81
TRIM28-209ENST00000597423 PKIGQ9Y2B9 76 aa9.99□□□□□ -0.81
TRIM28-209ENST00000597423 CNBPP62633 177 aaKnown RBP9.98□□□□□ -0.81
TRIM28-209ENST00000597423 C6orf48Q9UBA6 75 aa9.98□□□□□ -0.81
TRIM28-209ENST00000597423 TP73-AS1Q9UF72 201 aa9.98□□□□□ -0.81
TRIM28-209ENST00000597423 A0A0U1RRA0 63 aa9.97□□□□□ -0.81
TRIM28-209ENST00000597423 M0R143 59 aa9.97□□□□□ -0.81
TRIM28-209ENST00000597423 Q8N814 137 aa9.97□□□□□ -0.81
TRIM28-209ENST00000597423 WFDC2Q14508 124 aa9.96□□□□□ -0.82
TRIM28-209ENST00000597423 ADAMTSL4-AS1Q5T5F5 129 aa9.96□□□□□ -0.82
TRIM28-209ENST00000597423 LITAFQ99732 161 aa9.96□□□□□ -0.82
TRIM28-209ENST00000597423 PTTG1IPP53801 180 aa9.95□□□□□ -0.82
TRIM28-209ENST00000597423 RPL24P83731 157 aaKnown RBP9.95□□□□□ -0.82
TRIM28-209ENST00000597423 MIR7-3HGQ8N6C7 128 aa9.95□□□□□ -0.82
TRIM28-209ENST00000597423 TMEM238LA0A1B0GVL6 79 aa9.94□□□□□ -0.82
TRIM28-209ENST00000597423 A6NJY4 79 aa9.94□□□□□ -0.82
TRIM28-209ENST00000597423 NDUFC2-KCTD14E9PQ53 114 aa9.94□□□□□ -0.82
TRIM28-209ENST00000597423 SLPIP03973 132 aa9.94□□□□□ -0.82
TRIM28-209ENST00000597423 C9orf116Q5BN46 136 aaPredicted RBP9.94□□□□□ -0.82
TRIM28-209ENST00000597423 CEND1Q8N111 149 aa9.94□□□□□ -0.82
TRIM28-209ENST00000597423 PPDPFQ9H3Y8 114 aa9.94□□□□□ -0.82
TRIM28-209ENST00000597423 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-209ENST00000597423 TLX1NBP0CAT3 122 aa9.93□□□□□ -0.82
TRIM28-209ENST00000597423 MUSTN1Q8IVN3 82 aa9.93□□□□□ -0.82
TRIM28-209ENST00000597423 DNAH6Q9C0G6 4158 aa9.92□□□□□ -0.82
TRIM28-209ENST00000597423 LOC107984640A0A0U1RRK4 108 aa9.92□□□□□ -0.82
TRIM28-209ENST00000597423 RTL8CO15255 209 aa9.92□□□□□ -0.82
TRIM28-209ENST00000597423 LINC00336Q6ZUF6 198 aa9.92□□□□□ -0.82
TRIM28-209ENST00000597423 DAND5Q8N907 189 aa9.92□□□□□ -0.82
TRIM28-209ENST00000597423 LINC00308Q8TCZ7 52 aa9.92□□□□□ -0.82
TRIM28-209ENST00000597423 HINT1P49773 126 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-209ENST00000597423 TNP2Q05952 138 aa9.9□□□□□ -0.82
TRIM28-209ENST00000597423 LOC107984156A0A0G2JMH3 177 aa9.89□□□□□ -0.83
TRIM28-209ENST00000597423 A6NDN8 102 aa9.89□□□□□ -0.83
TRIM28-209ENST00000597423 BVES-AS1Q5T3Y7 98 aa9.89□□□□□ -0.83
TRIM28-209ENST00000597423 ARL17AQ8IVW1 177 aa9.89□□□□□ -0.83
TRIM28-209ENST00000597423 C9orf163Q8N9P6 203 aa9.89□□□□□ -0.83
TRIM28-209ENST00000597423 SND1-IT1Q9HBX3 110 aa9.89□□□□□ -0.83
TRIM28-209ENST00000597423 NPC2P61916 151 aa9.88□□□□□ -0.83
TRIM28-209ENST00000597423 RPL18AQ02543 176 aaKnown RBP9.88□□□□□ -0.83
TRIM28-209ENST00000597423 PGPEP1Q9NXJ5 209 aa9.88□□□□□ -0.83
TRIM28-209ENST00000597423 BATFQ16520 125 aa9.87□□□□□ -0.83
TRIM28-209ENST00000597423 GAGE2EQ4V326 116 aa9.87□□□□□ -0.83
TRIM28-209ENST00000597423 GAGE2DQ9UEU5 116 aa9.87□□□□□ -0.83
TRIM28-209ENST00000597423 KMT2AQ03164 3969 aa9.86□□□□□ -0.83
TRIM28-209ENST00000597423 IGLV5-52A0A0A0MRZ9 124 aa9.86□□□□□ -0.83
TRIM28-209ENST00000597423 GAGE2BQ13066 116 aa9.86□□□□□ -0.83
TRIM28-209ENST00000597423 Q6ZRP5 223 aa9.86□□□□□ -0.83
TRIM28-209ENST00000597423 LINC00474Q9P2X8 69 aa9.86□□□□□ -0.83
TRIM28-209ENST00000597423 A4D1N5 150 aa9.85□□□□□ -0.83
TRIM28-209ENST00000597423 NDUFC2O95298 119 aa9.85□□□□□ -0.83
TRIM28-209ENST00000597423 C16orf90A8MZG2 172 aa9.84□□□□□ -0.83
TRIM28-209ENST00000597423 FXYD2P54710 66 aa9.84□□□□□ -0.83
TRIM28-209ENST00000597423 SOSTDC1Q6X4U4 206 aa9.84□□□□□ -0.83
TRIM28-209ENST00000597423 RAB37Q96AX2 223 aa9.84□□□□□ -0.83
TRIM28-209ENST00000597423 XAGE1AQ9HD64 81 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms