RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TRBV30A0A0K0K1B3 111 aa9.17□□□□□ -0.94
VRK3-206ENST00000594090 SCO1O75880 301 aa9.17□□□□□ -0.94
VRK3-206ENST00000594090 TLX1NBP0CAT3 122 aa9.17□□□□□ -0.94
VRK3-206ENST00000594090 IGLC3P0DOY3 106 aa9.17□□□□□ -0.94
VRK3-206ENST00000594090 BAGE3Q86Y29 109 aa9.17□□□□□ -0.94
VRK3-206ENST00000594090 HSBP1O75506 76 aa9.16□□□□□ -0.94
VRK3-206ENST00000594090 C6orf226Q5I0X4 101 aa9.16□□□□□ -0.94
VRK3-206ENST00000594090 CKS1BP61024 79 aa9.15□□□□□ -0.94
VRK3-206ENST00000594090 C7orf33Q8WU49 177 aa9.15□□□□□ -0.94
VRK3-206ENST00000594090 SPINK8P0C7L1 97 aa9.14□□□□□ -0.95
VRK3-206ENST00000594090 Q6ZRP5 223 aa9.14□□□□□ -0.95
VRK3-206ENST00000594090 SRRM2Q9UQ35 2752 aaKnown RBP9.14□□□□□ -0.95
VRK3-206ENST00000594090 H3BRM9 83 aa9.14□□□□□ -0.95
VRK3-206ENST00000594090 SERF1AO75920 110 aa9.14□□□□□ -0.95
VRK3-206ENST00000594090 CXCL5P42830 114 aa9.14□□□□□ -0.95
VRK3-206ENST00000594090 LINC00310P59036 64 aa9.14□□□□□ -0.95
VRK3-206ENST00000594090 C9orf116Q5BN46 136 aaPredicted RBP9.14□□□□□ -0.95
VRK3-206ENST00000594090 FAM19A2Q8N3H0 131 aa9.14□□□□□ -0.95
VRK3-206ENST00000594090 IFI27L1Q96BM0 104 aa9.14□□□□□ -0.95
VRK3-206ENST00000594090 A0A1W2PNN7 141 aa9.13□□□□□ -0.95
VRK3-206ENST00000594090 ZNF22P17026 224 aaPredicted RBP9.13□□□□□ -0.95
VRK3-206ENST00000594090 COX7B2Q8TF08 81 aa9.13□□□□□ -0.95
VRK3-206ENST00000594090 NDUFC2-KCTD14E9PQ53 114 aa9.12□□□□□ -0.95
VRK3-206ENST00000594090 F8VRH5 84 aa9.12□□□□□ -0.95
VRK3-206ENST00000594090 GAGE2EQ4V326 116 aa9.12□□□□□ -0.95
VRK3-206ENST00000594090 GAGE2DQ9UEU5 116 aa9.12□□□□□ -0.95
VRK3-206ENST00000594090 C11orf86A6NJI1 115 aa9.11□□□□□ -0.95
VRK3-206ENST00000594090 TRAV12-1A0A0B4J245 112 aa9.1□□□□□ -0.95
VRK3-206ENST00000594090 HNRNPA3P51991 378 aaKnown RBP9.1□□□□□ -0.95
VRK3-206ENST00000594090 CHTOPQ9Y3Y2 248 aaKnown RBP9.1□□□□□ -0.95
VRK3-206ENST00000594090 IGLV5-39A0A0G2JS06 123 aa9.09□□□□□ -0.95
VRK3-206ENST00000594090 FAM168BA1KXE4 195 aa9.08□□□□□ -0.96
VRK3-206ENST00000594090 NUPR1O60356 82 aa9.08□□□□□ -0.96
VRK3-206ENST00000594090 LEPROTL1O95214 131 aa9.08□□□□□ -0.96
VRK3-206ENST00000594090 TMEM170BQ5T4T1 132 aa9.08□□□□□ -0.96
VRK3-206ENST00000594090 MYCBP2O75592 4640 aa9.08□□□□□ -0.96
VRK3-206ENST00000594090 PRR3P79522 188 aaKnown RBP9.07□□□□□ -0.96
VRK3-206ENST00000594090 HIST1H2BKO60814 126 aa9.06□□□□□ -0.96
VRK3-206ENST00000594090 HIST1H2BJP06899 126 aa9.06□□□□□ -0.96
VRK3-206ENST00000594090 HIST1H2BOP23527 126 aa9.06□□□□□ -0.96
VRK3-206ENST00000594090 HIST1H2BBP33778 126 aa9.06□□□□□ -0.96
VRK3-206ENST00000594090 HIST1H2BDP58876 126 aa9.06□□□□□ -0.96
VRK3-206ENST00000594090 HIST1H2BCP62807 126 aa9.06□□□□□ -0.96
VRK3-206ENST00000594090 HIST2H2BEQ16778 126 aa9.06□□□□□ -0.96
VRK3-206ENST00000594090 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.06□□□□□ -0.96
VRK3-206ENST00000594090 C9orf129Q5T035 196 aaKnown RBP9.06□□□□□ -0.96
VRK3-206ENST00000594090 PHF5AQ7RTV0 110 aaKnown RBP9.06□□□□□ -0.96
VRK3-206ENST00000594090 HIST1H2BHQ93079 126 aa9.06□□□□□ -0.96
VRK3-206ENST00000594090 HIST1H2BNQ99877 126 aa9.06□□□□□ -0.96
VRK3-206ENST00000594090 HIST1H2BMQ99879 126 aa9.06□□□□□ -0.96
VRK3-206ENST00000594090 FLG2Q5D862 2391 aaPredicted RBP9.06□□□□□ -0.96
VRK3-206ENST00000594090 FAM19A5Q7Z5A7 132 aaPredicted RBP9.05□□□□□ -0.96
VRK3-206ENST00000594090 H0Y8G0 127 aa9.05□□□□□ -0.96
VRK3-206ENST00000594090 KRTAP7-1Q8IUC3 87 aa9.05□□□□□ -0.96
VRK3-206ENST00000594090 HSPB8Q9UJY1 196 aa9.05□□□□□ -0.96
VRK3-206ENST00000594090 ODF1Q14990 250 aa9.04□□□□□ -0.96
VRK3-206ENST00000594090 XAGE1AQ9HD64 81 aa9.04□□□□□ -0.96
VRK3-206ENST00000594090 PKHD1L1Q86WI1 4243 aa9.03□□□□□ -0.96
VRK3-206ENST00000594090 TMEM223A0PJW6 202 aa9.03□□□□□ -0.96
VRK3-206ENST00000594090 M0QXV9 152 aa9.03□□□□□ -0.96
VRK3-206ENST00000594090 FABP4P15090 132 aa9.03□□□□□ -0.96
VRK3-206ENST00000594090 KRTAP29-1A8MX34 341 aaPredicted RBP9.02□□□□□ -0.97
VRK3-206ENST00000594090 PSORS1C2Q9UIG4 136 aa9.01□□□□□ -0.97
VRK3-206ENST00000594090 SERTAD4-AS1Q5TG53 156 aa9□□□□□ -0.97
VRK3-206ENST00000594090 SFTA2Q6UW10 78 aa9□□□□□ -0.97
VRK3-206ENST00000594090 OXTP01178 125 aa8.99□□□□□ -0.97
VRK3-206ENST00000594090 S100A1P23297 94 aa8.99□□□□□ -0.97
VRK3-206ENST00000594090 PLNP26678 52 aa8.99□□□□□ -0.97
VRK3-206ENST00000594090 ZNF625Q96I27 306 aaPredicted RBP8.99□□□□□ -0.97
VRK3-206ENST00000594090 J3QL48 77 aa8.98□□□□□ -0.97
VRK3-206ENST00000594090 ATP6V1G1O75348 118 aa8.98□□□□□ -0.97
VRK3-206ENST00000594090 KRTAP11-1Q8IUC1 163 aa8.98□□□□□ -0.97
VRK3-206ENST00000594090 MAP1LC3CQ9BXW4 147 aa8.98□□□□□ -0.97
VRK3-206ENST00000594090 ERG28Q9UKR5 140 aa8.98□□□□□ -0.97
VRK3-206ENST00000594090 PFN2P35080 140 aa8.97□□□□□ -0.97
VRK3-206ENST00000594090 LRP1Q07954 4544 aaKnown RBP8.97□□□□□ -0.97
VRK3-206ENST00000594090 DPM2O94777 84 aa8.97□□□□□ -0.97
VRK3-206ENST00000594090 COX17Q14061 63 aa8.97□□□□□ -0.97
VRK3-206ENST00000594090 C1orf137Q5JT78 98 aa8.97□□□□□ -0.97
VRK3-206ENST00000594090 PMCHL2Q9BQD1 86 aa8.97□□□□□ -0.97
VRK3-206ENST00000594090 C22orf24Q9Y442 160 aa8.97□□□□□ -0.97
VRK3-206ENST00000594090 FAT3Q8TDW7 4589 aa8.96□□□□□ -0.98
VRK3-206ENST00000594090 UBE2BP63146 152 aa8.96□□□□□ -0.98
VRK3-206ENST00000594090 COA6Q5JTJ3 125 aaKnown RBP8.96□□□□□ -0.98
VRK3-206ENST00000594090 TP73-AS1Q9UF72 201 aa8.96□□□□□ -0.98
VRK3-206ENST00000594090 PLA2G2DQ9UNK4 145 aa8.96□□□□□ -0.98
VRK3-206ENST00000594090 IGKCP01834 107 aa8.95□□□□□ -0.98
VRK3-206ENST00000594090 SRSF9Q13242 221 aaKnown RBP eCLIP8.95□□□□□ -0.98
VRK3-206ENST00000594090 SPINK6Q6UWN8 80 aa8.95□□□□□ -0.98
VRK3-206ENST00000594090 SND1-IT1Q9HBX3 110 aa8.94□□□□□ -0.98
VRK3-206ENST00000594090 SYS1-DBNDD2H3BUS1 97 aa8.93□□□□□ -0.98
VRK3-206ENST00000594090 LBHQ53QV2 105 aaPredicted RBP8.93□□□□□ -0.98
VRK3-206ENST00000594090 MRPL55Q7Z7F7 128 aaKnown RBP8.93□□□□□ -0.98
VRK3-206ENST00000594090 IGLV5-37A0A075B6J1 123 aa8.92□□□□□ -0.98
VRK3-206ENST00000594090 LEPROTO15243 131 aa8.92□□□□□ -0.98
VRK3-206ENST00000594090 IGLV7-43P04211 117 aa8.92□□□□□ -0.98
VRK3-206ENST00000594090 TSPEAR-AS2P59090 65 aa8.92□□□□□ -0.98
VRK3-206ENST00000594090 HERVK_113P61574 105 aa8.92□□□□□ -0.98
VRK3-206ENST00000594090 NDUFA12Q9UI09 145 aa8.92□□□□□ -0.98
VRK3-206ENST00000594090 HERV-K104P63124 156 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 148.4 ms