RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 MRPL35Q9NZE8 188 aaKnown RBP6.93□□□□□ -1.3
ZNF540-209ENST00000590588 CHTOPQ9Y3Y2 248 aaKnown RBP6.93□□□□□ -1.3
ZNF540-209ENST00000590588 A6NDN8 102 aa6.92□□□□□ -1.3
ZNF540-209ENST00000590588 E9PLD3 99 aa6.92□□□□□ -1.3
ZNF540-209ENST00000590588 BVES-AS1Q5T3Y7 98 aa6.92□□□□□ -1.3
ZNF540-209ENST00000590588 ZC2HC1BQ5TFG8 222 aa6.92□□□□□ -1.3
ZNF540-209ENST00000590588 ENHOQ6UWT2 76 aa6.92□□□□□ -1.3
ZNF540-209ENST00000590588 C2orf91Q6ZV80 131 aa6.92□□□□□ -1.3
ZNF540-209ENST00000590588 C20orf203Q8NBC4 194 aa6.92□□□□□ -1.3
ZNF540-209ENST00000590588 TIMM21Q9BVV7 248 aa6.92□□□□□ -1.3
ZNF540-209ENST00000590588 SPANXA1Q9NS26 97 aa6.92□□□□□ -1.3
ZNF540-209ENST00000590588 A0A087WWL8 130 aa6.91□□□□□ -1.3
ZNF540-209ENST00000590588 C11orf86A6NJI1 115 aa6.91□□□□□ -1.3
ZNF540-209ENST00000590588 CRPP02741 224 aa6.91□□□□□ -1.3
ZNF540-209ENST00000590588 FAM74A4Q5TZK3 123 aa6.91□□□□□ -1.3
ZNF540-209ENST00000590588 SPINK6Q6UWN8 80 aa6.91□□□□□ -1.3
ZNF540-209ENST00000590588 Q9UF83 564 aa6.91□□□□□ -1.3
ZNF540-209ENST00000590588 TMEM262E9PQX1 116 aa6.9□□□□□ -1.3
ZNF540-209ENST00000590588 TSHBP01222 138 aa6.9□□□□□ -1.3
ZNF540-209ENST00000590588 STPG4Q8N801 248 aa6.9□□□□□ -1.3
ZNF540-209ENST00000590588 PLAC8Q9NZF1 115 aa6.9□□□□□ -1.3
ZNF540-209ENST00000590588 IGHV3-64A0A075B6Q5 118 aa6.89□□□□□ -1.31
ZNF540-209ENST00000590588 HINT1P49773 126 aaPredicted RBP6.89□□□□□ -1.31
ZNF540-209ENST00000590588 PRR3P79522 188 aaKnown RBP6.89□□□□□ -1.31
ZNF540-209ENST00000590588 MPV17L2Q567V2 206 aa6.89□□□□□ -1.31
ZNF540-209ENST00000590588 SPACA4Q8TDM5 124 aa6.89□□□□□ -1.31
ZNF540-209ENST00000590588 JPT2Q9H910 190 aa6.89□□□□□ -1.31
ZNF540-209ENST00000590588 CHTF8P0CG12 524 aa6.88□□□□□ -1.31
ZNF540-209ENST00000590588 NMUP48645 174 aa6.88□□□□□ -1.31
ZNF540-209ENST00000590588 CNBPP62633 177 aaKnown RBP6.88□□□□□ -1.31
ZNF540-209ENST00000590588 MRPS36P82909 103 aaKnown RBP6.88□□□□□ -1.31
ZNF540-209ENST00000590588 MIAQ16674 131 aa6.88□□□□□ -1.31
ZNF540-209ENST00000590588 CST9LQ9H4G1 147 aa6.88□□□□□ -1.31
ZNF540-209ENST00000590588 CSDC2Q9Y534 153 aaKnown RBP6.88□□□□□ -1.31
ZNF540-209ENST00000590588 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.87□□□□□ -1.31
ZNF540-209ENST00000590588 H7C423 109 aa6.87□□□□□ -1.31
ZNF540-209ENST00000590588 BATFQ16520 125 aa6.87□□□□□ -1.31
ZNF540-209ENST00000590588 AMELXQ99217 191 aa6.87□□□□□ -1.31
ZNF540-209ENST00000590588 IGLV4-69A0A075B6H9 119 aa6.86□□□□□ -1.31
ZNF540-209ENST00000590588 TRBV25-1A0A075B6N4 114 aa6.86□□□□□ -1.31
ZNF540-209ENST00000590588 H3BRM9 83 aa6.86□□□□□ -1.31
ZNF540-209ENST00000590588 ANGP03950 147 aaKnown RBP6.86□□□□□ -1.31
ZNF540-209ENST00000590588 RPL36AP83881 106 aaKnown RBP6.86□□□□□ -1.31
ZNF540-209ENST00000590588 COTL1Q14019 142 aa6.86□□□□□ -1.31
ZNF540-209ENST00000590588 RPL36ALQ969Q0 106 aaKnown RBP6.86□□□□□ -1.31
ZNF540-209ENST00000590588 MYMXA0A1B0GTQ4 84 aa6.85□□□□□ -1.31
ZNF540-209ENST00000590588 TMEM238LA0A1B0GVL6 79 aa6.85□□□□□ -1.31
ZNF540-209ENST00000590588 SRSF9Q13242 221 aaKnown RBP eCLIP6.85□□□□□ -1.31
ZNF540-209ENST00000590588 FAM19A3Q7Z5A8 133 aa6.85□□□□□ -1.31
ZNF540-209ENST00000590588 PCP2Q8IVA1 136 aa6.85□□□□□ -1.31
ZNF540-209ENST00000590588 PLEKHB2Q96CS7 222 aa6.85□□□□□ -1.31
ZNF540-209ENST00000590588 SPANXB1Q9NS25 103 aaPredicted RBP6.85□□□□□ -1.31
ZNF540-209ENST00000590588 IGLV4-3A0A075B6K6 122 aa6.84□□□□□ -1.31
ZNF540-209ENST00000590588 TRBV7-3A0A075B6L6 115 aa6.84□□□□□ -1.31
ZNF540-209ENST00000590588 IGKV2D-26A0A0A0MRZ7 120 aa6.84□□□□□ -1.31
ZNF540-209ENST00000590588 TAX1BP3O14907 124 aa6.84□□□□□ -1.31
ZNF540-209ENST00000590588 ZNF25P17030 456 aaPredicted RBP6.84□□□□□ -1.31
ZNF540-209ENST00000590588 VCX2Q9H322 139 aa6.84□□□□□ -1.31
ZNF540-209ENST00000590588 TP73-AS1Q9UF72 201 aa6.84□□□□□ -1.31
ZNF540-209ENST00000590588 TINCRA0A1B0GVN0 87 aa6.83□□□□□ -1.32
ZNF540-209ENST00000590588 A0A1B0GWB2 263 aa6.83□□□□□ -1.32
ZNF540-209ENST00000590588 KRTAP26-1Q6PEX3 210 aa6.83□□□□□ -1.32
ZNF540-209ENST00000590588 TRBV6-8A0A0A6YYG3 113 aa6.82□□□□□ -1.32
ZNF540-209ENST00000590588 LEPROTO15243 131 aa6.82□□□□□ -1.32
ZNF540-209ENST00000590588 SLPIP03973 132 aa6.82□□□□□ -1.32
ZNF540-209ENST00000590588 UBE2D3P61077 147 aa6.82□□□□□ -1.32
ZNF540-209ENST00000590588 UBE2D2P62837 147 aa6.82□□□□□ -1.32
ZNF540-209ENST00000590588 RPL39P62891 51 aaKnown RBP6.82□□□□□ -1.32
ZNF540-209ENST00000590588 UBE2V1Q13404 147 aa6.82□□□□□ -1.32
ZNF540-209ENST00000590588 Q6ZVH6 145 aa6.82□□□□□ -1.32
ZNF540-209ENST00000590588 CEND1Q8N111 149 aa6.82□□□□□ -1.32
ZNF540-209ENST00000590588 PRR34Q9NV39 138 aa6.82□□□□□ -1.32
ZNF540-209ENST00000590588 UBE2D4Q9Y2X8 147 aa6.82□□□□□ -1.32
ZNF540-209ENST00000590588 IGLV5-45A0A087WSX0 123 aa6.81□□□□□ -1.32
ZNF540-209ENST00000590588 TMEM223A0PJW6 202 aa6.81□□□□□ -1.32
ZNF540-209ENST00000590588 C9orf118A6NHY6 69 aa6.81□□□□□ -1.32
ZNF540-209ENST00000590588 PPDPFQ9H3Y8 114 aa6.81□□□□□ -1.32
ZNF540-209ENST00000590588 ZNF815PA8K554 130 aa6.8□□□□□ -1.32
ZNF540-209ENST00000590588 SMIM13P0DJ93 91 aa6.8□□□□□ -1.32
ZNF540-209ENST00000590588 ZNF22P17026 224 aaPredicted RBP6.8□□□□□ -1.32
ZNF540-209ENST00000590588 COX6A2Q02221 97 aa6.8□□□□□ -1.32
ZNF540-209ENST00000590588 Q6ZRP5 223 aa6.8□□□□□ -1.32
ZNF540-209ENST00000590588 GTF2H5Q6ZYL4 71 aa6.8□□□□□ -1.32
ZNF540-209ENST00000590588 LINC00269Q8N2A0 174 aa6.8□□□□□ -1.32
ZNF540-209ENST00000590588 OR5A1Q8NGJ0 315 aa6.8□□□□□ -1.32
ZNF540-209ENST00000590588 CHCHD5Q9BSY4 110 aa6.8□□□□□ -1.32
ZNF540-209ENST00000590588 J3QQQ9 107 aa6.79□□□□□ -1.32
ZNF540-209ENST00000590588 LGALS3P17931 250 aaKnown RBP6.79□□□□□ -1.32
ZNF540-209ENST00000590588 HERVK_113P63121 156 aa6.79□□□□□ -1.32
ZNF540-209ENST00000590588 TMEM170BQ5T4T1 132 aa6.79□□□□□ -1.32
ZNF540-209ENST00000590588 CLPSL2Q6UWE3 100 aa6.79□□□□□ -1.32
ZNF540-209ENST00000590588 PSORS1C2Q9UIG4 136 aa6.79□□□□□ -1.32
ZNF540-209ENST00000590588 IGKV2-24A0A0C4DH68 120 aa6.78□□□□□ -1.32
ZNF540-209ENST00000590588 A0A0J9YXY3 114 aa6.78□□□□□ -1.32
ZNF540-209ENST00000590588 TMEM238C9JI98 176 aa6.78□□□□□ -1.32
ZNF540-209ENST00000590588 TIMM17BO60830 172 aa6.78□□□□□ -1.32
ZNF540-209ENST00000590588 LYRM7Q5U5X0 104 aa6.78□□□□□ -1.32
ZNF540-209ENST00000590588 SCGB1D4Q6XE38 83 aa6.78□□□□□ -1.32
ZNF540-209ENST00000590588 HIST1H4GQ99525 98 aa6.78□□□□□ -1.32
ZNF540-209ENST00000590588 IGHV1-58A0A0C4DH39 117 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms