RNA–Protein interactions for RNA: ENST00000589577.1

VPS25-204, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 5

Gene VPS25, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-204ENST00000589577 PRR34Q9NV39 138 aa3.84□□□□□ -1.79
VPS25-204ENST00000589577 CHTOPQ9Y3Y2 248 aaKnown RBP3.84□□□□□ -1.79
VPS25-204ENST00000589577 IGLV10-54A0A075B6I4 117 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 A0A096LNJ9 63 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 LINC00959A0A1B0GUT2 108 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 C5orf52A6NGY3 159 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 KRTAP9-7A8MTY7 169 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 HSBP1L1C9JCN9 74 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 F8VRH5 84 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 COX7A2LO14548 114 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 DPM2O94777 84 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 LINC00310P59036 64 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 CIRBPQ14011 172 aaKnown RBP3.83□□□□□ -1.8
VPS25-204ENST00000589577 CD164L2Q6UWJ8 174 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 AMELXQ99217 191 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 OPRPNQ99935 248 aaPredicted RBP3.83□□□□□ -1.8
VPS25-204ENST00000589577 CST9LQ9H4G1 147 aa3.83□□□□□ -1.8
VPS25-204ENST00000589577 TINCRA0A1B0GVN0 87 aa3.82□□□□□ -1.8
VPS25-204ENST00000589577 GAGE12HA6NDE8 117 aa3.82□□□□□ -1.8
VPS25-204ENST00000589577 SYS1-DBNDD2H3BUS1 97 aa3.82□□□□□ -1.8
VPS25-204ENST00000589577 NUPR1O60356 82 aa3.82□□□□□ -1.8
VPS25-204ENST00000589577 PRSS2P07478 247 aa3.82□□□□□ -1.8
VPS25-204ENST00000589577 UBE2D1P51668 147 aa3.82□□□□□ -1.8
VPS25-204ENST00000589577 TMEM170BQ5T4T1 132 aa3.82□□□□□ -1.8
VPS25-204ENST00000589577 HIST1H2BLQ99880 126 aa3.82□□□□□ -1.8
VPS25-204ENST00000589577 IGHV1-58A0A0C4DH39 117 aa3.81□□□□□ -1.8
VPS25-204ENST00000589577 ZNF561-AS1K7EIQ3 104 aa3.81□□□□□ -1.8
VPS25-204ENST00000589577 SCGB1D1O95968 90 aa3.81□□□□□ -1.8
VPS25-204ENST00000589577 IGKCP01834 107 aa3.81□□□□□ -1.8
VPS25-204ENST00000589577 C3orf79P0CE67 100 aa3.81□□□□□ -1.8
VPS25-204ENST00000589577 ENHOQ6UWT2 76 aa3.81□□□□□ -1.8
VPS25-204ENST00000589577 SDIM1Q6ZPB5 146 aa3.81□□□□□ -1.8
VPS25-204ENST00000589577 OR10D4PQ8NGN7 298 aa3.81□□□□□ -1.8
VPS25-204ENST00000589577 MRPL35Q9NZE8 188 aaKnown RBP3.81□□□□□ -1.8
VPS25-204ENST00000589577 PKIGQ9Y2B9 76 aa3.81□□□□□ -1.8
VPS25-204ENST00000589577 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.8□□□□□ -1.8
VPS25-204ENST00000589577 IGLC3P0DOY3 106 aa3.8□□□□□ -1.8
VPS25-204ENST00000589577 PRR3P79522 188 aaKnown RBP3.8□□□□□ -1.8
VPS25-204ENST00000589577 LINC00242Q5T6M2 205 aa3.8□□□□□ -1.8
VPS25-204ENST00000589577 SFTA2Q6UW10 78 aa3.8□□□□□ -1.8
VPS25-204ENST00000589577 LINC00173Q6ZV60 143 aa3.8□□□□□ -1.8
VPS25-204ENST00000589577 C5orf38Q86SI9 138 aa3.8□□□□□ -1.8
VPS25-204ENST00000589577 LINC01561Q8N1V8 128 aa3.8□□□□□ -1.8
VPS25-204ENST00000589577 C9orf163Q8N9P6 203 aa3.8□□□□□ -1.8
VPS25-204ENST00000589577 TOMM7Q9P0U1 55 aa3.8□□□□□ -1.8
VPS25-204ENST00000589577 A0A087WYN8 130 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 A0A087WZ39 114 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 hDV102S1A0JD36 115 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 C11orf86A6NJI1 115 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 CXCL5P42830 114 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 CKS1BP61024 79 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 S100A12P80511 92 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 SPAG11BQ08648 103 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 C6orf226Q5I0X4 101 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 ZC2HC1BQ5TFG8 222 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 LINC01545Q5VT33 79 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 FAM19A3Q7Z5A8 133 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 ORAOV1Q8WV07 137 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 PLEKHB2Q96CS7 222 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 CDKN2A-AS1Q9UH64 79 aa3.79□□□□□ -1.8
VPS25-204ENST00000589577 IGHV3OR16-9A0A0B4J2B5 98 aa3.78□□□□□ -1.8
VPS25-204ENST00000589577 USP17L23D6RBM5 183 aa3.78□□□□□ -1.8
VPS25-204ENST00000589577 F8WDY8 70 aa3.78□□□□□ -1.8
VPS25-204ENST00000589577 CHTF8P0CG12 524 aa3.78□□□□□ -1.8
VPS25-204ENST00000589577 ZNF22P17026 224 aaPredicted RBP3.78□□□□□ -1.8
VPS25-204ENST00000589577 LGALS3P17931 250 aaKnown RBP3.78□□□□□ -1.8
VPS25-204ENST00000589577 FOXI1Q12951 378 aa3.78□□□□□ -1.8
VPS25-204ENST00000589577 PMCHL2Q9BQD1 86 aa3.78□□□□□ -1.8
VPS25-204ENST00000589577 IGLV4-69A0A075B6H9 119 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 IGLV5-45A0A087WSX0 123 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.77□□□□□ -1.81
VPS25-204ENST00000589577 LINC00587B1AMM8 73 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 NDUFA1O15239 70 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 SPINK8P0C7L1 97 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 SRSF9Q13242 221 aaKnown RBP eCLIP3.77□□□□□ -1.81
VPS25-204ENST00000589577 REG3GQ6UW15 175 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 SPINK6Q6UWN8 80 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 Q8IZM0 81 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 SPACA4Q8TDM5 124 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 COX7B2Q8TF08 81 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 CAMK2N2Q96S95 79 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 VAMP8Q9BV40 100 aa3.77□□□□□ -1.81
VPS25-204ENST00000589577 IGHV3-64A0A075B6Q5 118 aa3.76□□□□□ -1.81
VPS25-204ENST00000589577 GVQW2A0A096LPI5 108 aaPredicted RBP3.76□□□□□ -1.81
VPS25-204ENST00000589577 MYMXA0A1B0GTQ4 84 aa3.76□□□□□ -1.81
VPS25-204ENST00000589577 TMEM223A0PJW6 202 aa3.76□□□□□ -1.81
VPS25-204ENST00000589577 SMIM1B2RUZ4 78 aa3.76□□□□□ -1.81
VPS25-204ENST00000589577 NMUP48645 174 aa3.76□□□□□ -1.81
VPS25-204ENST00000589577 COX6A2Q02221 97 aa3.76□□□□□ -1.81
VPS25-204ENST00000589577 JOSD1Q15040 202 aaPredicted RBP3.76□□□□□ -1.81
VPS25-204ENST00000589577 HIGD2BQ4VC39 106 aa3.76□□□□□ -1.81
VPS25-204ENST00000589577 ATOH7Q8N100 152 aa3.76□□□□□ -1.81
VPS25-204ENST00000589577 FAM104AQ969W3 186 aa3.76□□□□□ -1.81
VPS25-204ENST00000589577 C2orf48Q96LS8 159 aa3.76□□□□□ -1.81
VPS25-204ENST00000589577 PLAC8Q9NZF1 115 aa3.76□□□□□ -1.81
VPS25-204ENST00000589577 LOC100996750A0A140TA64 210 aa3.75□□□□□ -1.81
VPS25-204ENST00000589577 E9PLD3 99 aa3.75□□□□□ -1.81
VPS25-204ENST00000589577 J3QQQ9 107 aa3.75□□□□□ -1.81
VPS25-204ENST00000589577 LEPROTO15243 131 aa3.75□□□□□ -1.81
VPS25-204ENST00000589577 HERV-K104P63124 156 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms