RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 PDZD11Q5EBL8 140 aa6.84□□□□□ -1.31
CLIP3-203ENST00000586457 BAGE3Q86Y29 109 aa6.84□□□□□ -1.31
CLIP3-203ENST00000586457 F8VRH5 84 aa6.83□□□□□ -1.32
CLIP3-203ENST00000586457 TLX1NBP0CAT3 122 aa6.83□□□□□ -1.32
CLIP3-203ENST00000586457 PMCHL1Q16048 86 aa6.83□□□□□ -1.32
CLIP3-203ENST00000586457 COX7B2Q8TF08 81 aa6.83□□□□□ -1.32
CLIP3-203ENST00000586457 DNAH8Q96JB1 4490 aa6.82□□□□□ -1.32
CLIP3-203ENST00000586457 A0A1W2PNN7 141 aa6.82□□□□□ -1.32
CLIP3-203ENST00000586457 KRTAP10-4P60372 401 aaPredicted RBP6.82□□□□□ -1.32
CLIP3-203ENST00000586457 PRR3P79522 188 aaKnown RBP6.82□□□□□ -1.32
CLIP3-203ENST00000586457 FAM19A5Q7Z5A7 132 aaPredicted RBP6.82□□□□□ -1.32
CLIP3-203ENST00000586457 CBLN2Q8IUK8 224 aa6.82□□□□□ -1.32
CLIP3-203ENST00000586457 CHCHD1Q96BP2 118 aaKnown RBP6.82□□□□□ -1.32
CLIP3-203ENST00000586457 VPS13BQ7Z7G8 4022 aa6.82□□□□□ -1.32
CLIP3-203ENST00000586457 FAT1Q14517 4588 aa6.82□□□□□ -1.32
CLIP3-203ENST00000586457 HSBP1O75506 76 aa6.81□□□□□ -1.32
CLIP3-203ENST00000586457 SPINK8P0C7L1 97 aa6.81□□□□□ -1.32
CLIP3-203ENST00000586457 UBE2BP63146 152 aa6.81□□□□□ -1.32
CLIP3-203ENST00000586457 FLG2Q5D862 2391 aaPredicted RBP6.81□□□□□ -1.32
CLIP3-203ENST00000586457 TMEM170BQ5T4T1 132 aa6.8□□□□□ -1.32
CLIP3-203ENST00000586457 PHF5AQ7RTV0 110 aaKnown RBP6.8□□□□□ -1.32
CLIP3-203ENST00000586457 DMBT1Q9UGM3 2413 aaPredicted RBP6.8□□□□□ -1.32
CLIP3-203ENST00000586457 SMIM1B2RUZ4 78 aa6.79□□□□□ -1.32
CLIP3-203ENST00000586457 TRGC2P03986 189 aa6.79□□□□□ -1.32
CLIP3-203ENST00000586457 C1orf137Q5JT78 98 aa6.79□□□□□ -1.32
CLIP3-203ENST00000586457 REG3GQ6UW15 175 aa6.79□□□□□ -1.32
CLIP3-203ENST00000586457 SPINK6Q6UWN8 80 aa6.79□□□□□ -1.32
CLIP3-203ENST00000586457 CHTOPQ9Y3Y2 248 aaKnown RBP6.79□□□□□ -1.32
CLIP3-203ENST00000586457 IGLV5-45A0A087WSX0 123 aa6.78□□□□□ -1.32
CLIP3-203ENST00000586457 FAM168BA1KXE4 195 aa6.78□□□□□ -1.32
CLIP3-203ENST00000586457 M0QXV9 152 aa6.78□□□□□ -1.32
CLIP3-203ENST00000586457 IGLC3P0DOY3 106 aa6.78□□□□□ -1.32
CLIP3-203ENST00000586457 HNRNPA3P51991 378 aaKnown RBP6.78□□□□□ -1.32
CLIP3-203ENST00000586457 LBHQ53QV2 105 aaPredicted RBP6.78□□□□□ -1.32
CLIP3-203ENST00000586457 IFI27L1Q96BM0 104 aa6.78□□□□□ -1.32
CLIP3-203ENST00000586457 URB1-AS1Q96HZ7 61 aa6.78□□□□□ -1.32
CLIP3-203ENST00000586457 YPEL4Q96NS1 127 aa6.78□□□□□ -1.32
CLIP3-203ENST00000586457 A0A096LNJ9 63 aa6.77□□□□□ -1.33
CLIP3-203ENST00000586457 XAGE1AQ9HD64 81 aa6.77□□□□□ -1.33
CLIP3-203ENST00000586457 PSORS1C2Q9UIG4 136 aa6.77□□□□□ -1.33
CLIP3-203ENST00000586457 H0Y8G0 127 aa6.76□□□□□ -1.33
CLIP3-203ENST00000586457 SFTA2Q6UW10 78 aa6.76□□□□□ -1.33
CLIP3-203ENST00000586457 ATP6V1G1O75348 118 aa6.75□□□□□ -1.33
CLIP3-203ENST00000586457 ZNF22P17026 224 aaPredicted RBP6.75□□□□□ -1.33
CLIP3-203ENST00000586457 PFN2P35080 140 aa6.75□□□□□ -1.33
CLIP3-203ENST00000586457 C9orf129Q5T035 196 aaKnown RBP6.75□□□□□ -1.33
CLIP3-203ENST00000586457 SERTAD4-AS1Q5TG53 156 aa6.75□□□□□ -1.33
CLIP3-203ENST00000586457 FAM19A2Q8N3H0 131 aa6.75□□□□□ -1.33
CLIP3-203ENST00000586457 TRAV12-1A0A0B4J245 112 aa6.74□□□□□ -1.33
CLIP3-203ENST00000586457 LEPROTL1O95214 131 aa6.74□□□□□ -1.33
CLIP3-203ENST00000586457 HSPB8Q9UJY1 196 aa6.74□□□□□ -1.33
CLIP3-203ENST00000586457 C11orf86A6NJI1 115 aa6.73□□□□□ -1.33
CLIP3-203ENST00000586457 NKAPP1Q8N9T2 125 aa6.73□□□□□ -1.33
CLIP3-203ENST00000586457 DIRC1Q969H9 104 aa6.73□□□□□ -1.33
CLIP3-203ENST00000586457 C22orf24Q9Y442 160 aa6.73□□□□□ -1.33
CLIP3-203ENST00000586457 IGLV5-39A0A0G2JS06 123 aa6.72□□□□□ -1.33
CLIP3-203ENST00000586457 COLCA2A8K830 154 aa6.72□□□□□ -1.33
CLIP3-203ENST00000586457 SERF1AO75920 110 aa6.72□□□□□ -1.33
CLIP3-203ENST00000586457 FABP4P15090 132 aa6.72□□□□□ -1.33
CLIP3-203ENST00000586457 COX17Q14061 63 aa6.72□□□□□ -1.33
CLIP3-203ENST00000586457 ZNF625Q96I27 306 aaPredicted RBP6.72□□□□□ -1.33
CLIP3-203ENST00000586457 IGLV7-43P04211 117 aa6.71□□□□□ -1.34
CLIP3-203ENST00000586457 LINC00158P58513 81 aa6.71□□□□□ -1.34
CLIP3-203ENST00000586457 SRSF9Q13242 221 aaKnown RBP eCLIP6.71□□□□□ -1.34
CLIP3-203ENST00000586457 MRPL55Q7Z7F7 128 aaKnown RBP6.71□□□□□ -1.34
CLIP3-203ENST00000586457 ERG28Q9UKR5 140 aa6.71□□□□□ -1.34
CLIP3-203ENST00000586457 RPL24P83731 157 aaKnown RBP6.7□□□□□ -1.34
CLIP3-203ENST00000586457 LINC01600Q96MT4 127 aa6.7□□□□□ -1.34
CLIP3-203ENST00000586457 MAP1LC3CQ9BXW4 147 aa6.7□□□□□ -1.34
CLIP3-203ENST00000586457 MYCBP2O75592 4640 aa6.7□□□□□ -1.34
CLIP3-203ENST00000586457 LINC00587B1AMM8 73 aa6.69□□□□□ -1.34
CLIP3-203ENST00000586457 NUPR1O60356 82 aa6.69□□□□□ -1.34
CLIP3-203ENST00000586457 PLNP26678 52 aa6.69□□□□□ -1.34
CLIP3-203ENST00000586457 HERVK_113P61574 105 aa6.69□□□□□ -1.34
CLIP3-203ENST00000586457 TP73-AS1Q9UF72 201 aa6.69□□□□□ -1.34
CLIP3-203ENST00000586457 TMEM223A0PJW6 202 aa6.68□□□□□ -1.34
CLIP3-203ENST00000586457 GAGE10A6NGK3 116 aa6.68□□□□□ -1.34
CLIP3-203ENST00000586457 RPL37AP8A6NKH3 93 aa6.68□□□□□ -1.34
CLIP3-203ENST00000586457 MEIG1Q5JSS6 88 aa6.68□□□□□ -1.34
CLIP3-203ENST00000586457 PLA2G2DQ9UNK4 145 aa6.68□□□□□ -1.34
CLIP3-203ENST00000586457 MYMXA0A1B0GTQ4 84 aa6.67□□□□□ -1.34
CLIP3-203ENST00000586457 SCO1O75880 301 aa6.67□□□□□ -1.34
CLIP3-203ENST00000586457 HERV-K104P63124 156 aa6.67□□□□□ -1.34
CLIP3-203ENST00000586457 KRTAP7-1Q8IUC3 87 aa6.67□□□□□ -1.34
CLIP3-203ENST00000586457 SND1-IT1Q9HBX3 110 aa6.67□□□□□ -1.34
CLIP3-203ENST00000586457 A0A0U1RRA0 63 aa6.66□□□□□ -1.34
CLIP3-203ENST00000586457 DPM2O94777 84 aa6.66□□□□□ -1.34
CLIP3-203ENST00000586457 RPL28P46779 137 aaKnown RBP6.66□□□□□ -1.34
CLIP3-203ENST00000586457 ODF1Q14990 250 aa6.66□□□□□ -1.34
CLIP3-203ENST00000586457 LINC00167Q96N53 147 aa6.66□□□□□ -1.34
CLIP3-203ENST00000586457 H0Y9J4 135 aa6.65□□□□□ -1.34
CLIP3-203ENST00000586457 IGKCP01834 107 aa6.65□□□□□ -1.34
CLIP3-203ENST00000586457 KRTAP11-1Q8IUC1 163 aa6.65□□□□□ -1.34
CLIP3-203ENST00000586457 PLEKHB2Q96CS7 222 aa6.65□□□□□ -1.34
CLIP3-203ENST00000586457 NDUFA12Q9UI09 145 aa6.65□□□□□ -1.34
CLIP3-203ENST00000586457 ZNF861PO60384 105 aa6.64□□□□□ -1.35
CLIP3-203ENST00000586457 BCE1O60756 84 aa6.64□□□□□ -1.35
CLIP3-203ENST00000586457 LGALS3P17931 250 aaKnown RBP6.64□□□□□ -1.35
CLIP3-203ENST00000586457 UBE2AP49459 152 aa6.64□□□□□ -1.35
CLIP3-203ENST00000586457 IGLV5-37A0A075B6J1 123 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms