RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 PCP2Q8IVA1 136 aa10.58□□□□□ -0.72
SS18-211ENST00000578954 TTTY13Q9BZ97 58 aa10.58□□□□□ -0.72
SS18-211ENST00000578954 NDUFA12Q9UI09 145 aa10.58□□□□□ -0.72
SS18-211ENST00000578954 A0A087WTM6 91 aa10.57□□□□□ -0.72
SS18-211ENST00000578954 ZNF561-AS1K7EIQ3 104 aa10.57□□□□□ -0.72
SS18-211ENST00000578954 LECT2O14960 151 aa10.57□□□□□ -0.72
SS18-211ENST00000578954 DLEU1O43261 78 aa10.57□□□□□ -0.72
SS18-211ENST00000578954 BOD1L2Q8IYS8 172 aa10.57□□□□□ -0.72
SS18-211ENST00000578954 MYMXA0A1B0GTQ4 84 aa10.56□□□□□ -0.72
SS18-211ENST00000578954 ZNF815PA8K554 130 aa10.56□□□□□ -0.72
SS18-211ENST00000578954 FRAS1Q86XX4 4008 aa10.55□□□□□ -0.72
SS18-211ENST00000578954 HERV-K104P63124 156 aa10.55□□□□□ -0.72
SS18-211ENST00000578954 C2orf82Q6UX34 121 aa10.55□□□□□ -0.72
SS18-211ENST00000578954 LINC00526Q96FQ7 95 aa10.55□□□□□ -0.72
SS18-211ENST00000578954 CKS1BP61024 79 aa10.54□□□□□ -0.72
SS18-211ENST00000578954 C14orf144Q96I85 54 aa10.54□□□□□ -0.72
SS18-211ENST00000578954 SLPIP03973 132 aa10.53□□□□□ -0.72
SS18-211ENST00000578954 CNBPP62633 177 aaKnown RBP10.53□□□□□ -0.72
SS18-211ENST00000578954 C10orf25Q5T742 122 aa10.53□□□□□ -0.72
SS18-211ENST00000578954 SLC25A34Q6PIV7 304 aa10.53□□□□□ -0.72
SS18-211ENST00000578954 Q8N814 137 aa10.53□□□□□ -0.72
SS18-211ENST00000578954 CAMK2N2Q96S95 79 aa10.53□□□□□ -0.72
SS18-211ENST00000578954 TRBV30A0A0K0K1B3 111 aa10.52□□□□□ -0.73
SS18-211ENST00000578954 TNP2Q05952 138 aa10.52□□□□□ -0.73
SS18-211ENST00000578954 SYCNQ0VAF6 134 aa10.52□□□□□ -0.73
SS18-211ENST00000578954 UNQ6190/PRO20217Q6UXQ8 127 aa10.52□□□□□ -0.73
SS18-211ENST00000578954 Q6ZRU5 148 aa10.52□□□□□ -0.73
SS18-211ENST00000578954 A0A0J9YXY3 114 aa10.51□□□□□ -0.73
SS18-211ENST00000578954 RNF151Q2KHN1 245 aa10.51□□□□□ -0.73
SS18-211ENST00000578954 C6orf48Q9UBA6 75 aa10.51□□□□□ -0.73
SS18-211ENST00000578954 UQCR10Q9UDW1 63 aa10.51□□□□□ -0.73
SS18-211ENST00000578954 TP73-AS1Q9UF72 201 aa10.51□□□□□ -0.73
SS18-211ENST00000578954 TIMM17BO60830 172 aa10.49□□□□□ -0.73
SS18-211ENST00000578954 CARD19Q96LW7 228 aa10.49□□□□□ -0.73
SS18-211ENST00000578954 PRO1933Q9H354 126 aa10.49□□□□□ -0.73
SS18-211ENST00000578954 FAT2Q9NYQ8 4349 aa10.48□□□□□ -0.73
SS18-211ENST00000578954 LINC00587B1AMM8 73 aa10.48□□□□□ -0.73
SS18-211ENST00000578954 LINC00336Q6ZUF6 198 aa10.48□□□□□ -0.73
SS18-211ENST00000578954 C2orf91Q6ZV80 131 aa10.48□□□□□ -0.73
SS18-211ENST00000578954 LITAFQ99732 161 aa10.48□□□□□ -0.73
SS18-211ENST00000578954 MIEN1Q9BRT3 115 aa10.48□□□□□ -0.73
SS18-211ENST00000578954 HIGD1BQ9P298 99 aa10.48□□□□□ -0.73
SS18-211ENST00000578954 ERG28Q9UKR5 140 aa10.48□□□□□ -0.73
SS18-211ENST00000578954 TSTD3H0UI37 97 aa10.47□□□□□ -0.73
SS18-211ENST00000578954 COX17Q14061 63 aa10.47□□□□□ -0.73
SS18-211ENST00000578954 SCGB1D4Q6XE38 83 aa10.47□□□□□ -0.73
SS18-211ENST00000578954 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.46□□□□□ -0.73
SS18-211ENST00000578954 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.46□□□□□ -0.73
SS18-211ENST00000578954 EREGO14944 169 aa10.46□□□□□ -0.73
SS18-211ENST00000578954 TLX1NBP0CAT3 122 aa10.46□□□□□ -0.73
SS18-211ENST00000578954 DNAH11Q96DT5 4516 aa10.45□□□□□ -0.74
SS18-211ENST00000578954 C9orf116Q5BN46 136 aaPredicted RBP10.45□□□□□ -0.74
SS18-211ENST00000578954 MEIG1Q5JSS6 88 aa10.45□□□□□ -0.74
SS18-211ENST00000578954 SPANXB1Q9NS25 103 aaPredicted RBP10.45□□□□□ -0.74
SS18-211ENST00000578954 TMEM238C9JI98 176 aa10.44□□□□□ -0.74
SS18-211ENST00000578954 SMIM13P0DJ93 91 aa10.44□□□□□ -0.74
SS18-211ENST00000578954 C9orf163Q8N9P6 203 aa10.44□□□□□ -0.74
SS18-211ENST00000578954 CIRBPQ14011 172 aaKnown RBP10.43□□□□□ -0.74
SS18-211ENST00000578954 SPANXDQ9BXN6 97 aa10.43□□□□□ -0.74
SS18-211ENST00000578954 SPANXCQ9NY87 97 aa10.43□□□□□ -0.74
SS18-211ENST00000578954 RYR3Q15413 4870 aa10.42□□□□□ -0.74
SS18-211ENST00000578954 NDUFC2-KCTD14E9PQ53 114 aa10.42□□□□□ -0.74
SS18-211ENST00000578954 ADAMTSL4-AS1Q5T5F5 129 aa10.42□□□□□ -0.74
SS18-211ENST00000578954 Q6ZVH6 145 aa10.42□□□□□ -0.74
SS18-211ENST00000578954 PFN2P35080 140 aa10.41□□□□□ -0.74
SS18-211ENST00000578954 HNRNPA3P51991 378 aaKnown RBP10.41□□□□□ -0.74
SS18-211ENST00000578954 PTTG1IPP53801 180 aa10.4□□□□□ -0.74
SS18-211ENST00000578954 LINC00158P58513 81 aa10.4□□□□□ -0.74
SS18-211ENST00000578954 MIR7-3HGQ8N6C7 128 aa10.4□□□□□ -0.74
SS18-211ENST00000578954 PPDPFQ9H3Y8 114 aa10.4□□□□□ -0.74
SS18-211ENST00000578954 HECTD4Q9Y4D8 3996 aa10.39□□□□□ -0.75
SS18-211ENST00000578954 A0A0U1RRA0 63 aa10.39□□□□□ -0.75
SS18-211ENST00000578954 LOC107984640A0A0U1RRK4 108 aa10.39□□□□□ -0.75
SS18-211ENST00000578954 TAL2Q16559 108 aa10.39□□□□□ -0.75
SS18-211ENST00000578954 PKIGQ9Y2B9 76 aa10.39□□□□□ -0.75
SS18-211ENST00000578954 IGLV5-52A0A0A0MRZ9 124 aa10.38□□□□□ -0.75
SS18-211ENST00000578954 LOC107984156A0A0G2JMH3 177 aa10.38□□□□□ -0.75
SS18-211ENST00000578954 A0A1B0GVY2 172 aa10.38□□□□□ -0.75
SS18-211ENST00000578954 KRTAP10-2P60368 255 aa10.38□□□□□ -0.75
SS18-211ENST00000578954 Q6ZRP5 223 aa10.38□□□□□ -0.75
SS18-211ENST00000578954 ARL17AQ8IVW1 177 aa10.38□□□□□ -0.75
SS18-211ENST00000578954 PGPEP1Q9NXJ5 209 aa10.38□□□□□ -0.75
SS18-211ENST00000578954 IFITM1P13164 125 aa10.37□□□□□ -0.75
SS18-211ENST00000578954 DDTP30046 118 aa10.37□□□□□ -0.75
SS18-211ENST00000578954 SDIM1Q6ZPB5 146 aa10.37□□□□□ -0.75
SS18-211ENST00000578954 DAND5Q8N907 189 aa10.37□□□□□ -0.75
SS18-211ENST00000578954 DNAH5Q8TE73 4624 aa10.37□□□□□ -0.75
SS18-211ENST00000578954 HSD52Q0P140 79 aa10.36□□□□□ -0.75
SS18-211ENST00000578954 LINC00308Q8TCZ7 52 aa10.36□□□□□ -0.75
SS18-211ENST00000578954 SND1-IT1Q9HBX3 110 aa10.36□□□□□ -0.75
SS18-211ENST00000578954 C16orf90A8MZG2 172 aa10.35□□□□□ -0.75
SS18-211ENST00000578954 SRSF9Q13242 221 aaKnown RBP eCLIP10.35□□□□□ -0.75
SS18-211ENST00000578954 SOSTDC1Q6X4U4 206 aa10.35□□□□□ -0.75
SS18-211ENST00000578954 HIST1H4GQ99525 98 aa10.35□□□□□ -0.75
SS18-211ENST00000578954 PKD1P98161 4303 aa10.34□□□□□ -0.75
SS18-211ENST00000578954 EIF4EBP3O60516 100 aaPredicted RBP10.34□□□□□ -0.75
SS18-211ENST00000578954 GCSHP23434 173 aa10.34□□□□□ -0.75
SS18-211ENST00000578954 RPL18AQ02543 176 aaKnown RBP10.34□□□□□ -0.75
SS18-211ENST00000578954 COPS9Q8WXC6 57 aa10.34□□□□□ -0.75
SS18-211ENST00000578954 FUSP35637 526 aaKnown RBP eCLIP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms