RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 LINC00643Q86TS7 51 aa0.54□□□□□ -2.32
CHD3-217ENST00000574022 ST20Q9HBF5 79 aa0.54□□□□□ -2.32
CHD3-217ENST00000574022 TP53AIP1Q9HCN2 124 aa0.54□□□□□ -2.32
CHD3-217ENST00000574022 PRO0255Q9UI72 69 aa0.54□□□□□ -2.32
CHD3-217ENST00000574022 UBE2D4Q9Y2X8 147 aa0.54□□□□□ -2.32
CHD3-217ENST00000574022 ZNF462Q96JM2 2506 aa0.54□□□□□ -2.32
CHD3-217ENST00000574022 SAMD9Q5K651 1589 aa0.53□□□□□ -2.32
CHD3-217ENST00000574022 KIAA0556O60303 1618 aa0.53□□□□□ -2.32
CHD3-217ENST00000574022 OTOGLQ3ZCN5 2332 aa0.53□□□□□ -2.32
CHD3-217ENST00000574022 TRBV7-4A0A0J9YYF1 115 aa0.53□□□□□ -2.32
CHD3-217ENST00000574022 IQCF6A8MYZ5 107 aa0.53□□□□□ -2.32
CHD3-217ENST00000574022 ACYP1P07311 99 aa0.53□□□□□ -2.32
CHD3-217ENST00000574022 PLGLAQ15195 96 aa0.53□□□□□ -2.32
CHD3-217ENST00000574022 PLAC8Q9NZF1 115 aa0.53□□□□□ -2.32
CHD3-217ENST00000574022 LRRC9Q6ZRR7 1453 aa0.53□□□□□ -2.33
CHD3-217ENST00000574022 KDM5DQ9BY66 1539 aa0.53□□□□□ -2.33
CHD3-217ENST00000574022 ASXL3Q9C0F0 2248 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 MYMXA0A1B0GTQ4 84 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 LINC00959A0A1B0GUT2 108 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 I3L2K1 104 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 WFDC2Q14508 124 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 PIGYQ3MUY2 71 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 RRBP1Q9P2E9 1410 aaKnown RBP0.52□□□□□ -2.33
CHD3-217ENST00000574022 ATP7BP35670 1465 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 SETBP1Q9Y6X0 1596 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 BIVM-ERCC5R4GMW8 1640 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 LRRC37AA6NMS7 1700 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 KIF20BQ96Q89 1820 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 ANKRD36A6QL64 1941 aa0.52□□□□□ -2.33
CHD3-217ENST00000574022 ZFHX3Q15911 3703 aa0.51□□□□□ -2.33
CHD3-217ENST00000574022 FXYD6-FXYD2A0A087WZ82 144 aa0.51□□□□□ -2.33
CHD3-217ENST00000574022 MAP3K1Q13233 1512 aa0.51□□□□□ -2.33
CHD3-217ENST00000574022 FAM208BQ5VWN6 2430 aa0.51□□□□□ -2.33
CHD3-217ENST00000574022 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.51□□□□□ -2.33
CHD3-217ENST00000574022 LRRIQ1Q96JM4 1722 aa0.51□□□□□ -2.33
CHD3-217ENST00000574022 CFAP74Q9C0B2 1584 aa0.51□□□□□ -2.33
CHD3-217ENST00000574022 LTN1O94822 1766 aa0.5□□□□□ -2.33
CHD3-217ENST00000574022 LRRC7Q96NW7 1537 aa0.5□□□□□ -2.33
CHD3-217ENST00000574022 CCDC141Q6ZP82 1450 aa0.5□□□□□ -2.33
CHD3-217ENST00000574022 MEGF8Q7Z7M0 2845 aa0.5□□□□□ -2.33
CHD3-217ENST00000574022 A0A1B0GUT8 65 aa0.5□□□□□ -2.33
CHD3-217ENST00000574022 CEBPZOSA8MTT3 80 aa0.5□□□□□ -2.33
CHD3-217ENST00000574022 IGLC2P0DOY2 106 aa0.5□□□□□ -2.33
CHD3-217ENST00000574022 IGLC3P0DOY3 106 aa0.5□□□□□ -2.33
CHD3-217ENST00000574022 Q8IZM0 81 aa0.5□□□□□ -2.33
CHD3-217ENST00000574022 COL14A1Q05707 1796 aaKnown RBP0.5□□□□□ -2.33
CHD3-217ENST00000574022 RGPD1P0DJD0 1748 aa0.5□□□□□ -2.33
CHD3-217ENST00000574022 PTPN23Q9H3S7 1636 aa0.49□□□□□ -2.33
CHD3-217ENST00000574022 ABCC1P33527 1531 aa0.49□□□□□ -2.33
CHD3-217ENST00000574022 DNAJC13O75165 2243 aa0.49□□□□□ -2.33
CHD3-217ENST00000574022 DEFB112Q30KQ8 113 aa0.49□□□□□ -2.33
CHD3-217ENST00000574022 DEFB123Q8N688 67 aa0.49□□□□□ -2.33
CHD3-217ENST00000574022 RGPD8O14715 1765 aaPredicted RBP0.49□□□□□ -2.33
CHD3-217ENST00000574022 RGPD5Q99666 1765 aa0.49□□□□□ -2.33
CHD3-217ENST00000574022 QSER1Q2KHR3 1735 aa0.49□□□□□ -2.33
CHD3-217ENST00000574022 PPRC1Q5VV67 1664 aaKnown RBP0.49□□□□□ -2.33
CHD3-217ENST00000574022 PIK3C2BO00750 1634 aa0.49□□□□□ -2.33
CHD3-217ENST00000574022 SLIT1O75093 1534 aa0.48□□□□□ -2.33
CHD3-217ENST00000574022 NKTRP30414 1462 aaKnown RBP0.48□□□□□ -2.33
CHD3-217ENST00000574022 TENM1Q9UKZ4 2725 aa0.48□□□□□ -2.33
CHD3-217ENST00000574022 RGPD2P0DJD1 1756 aa0.48□□□□□ -2.33
CHD3-217ENST00000574022 H3BUT2 72 aa0.48□□□□□ -2.33
CHD3-217ENST00000574022 KRTAP21-2Q3LI59 83 aa0.48□□□□□ -2.33
CHD3-217ENST00000574022 BVES-AS1Q5T3Y7 98 aa0.48□□□□□ -2.33
CHD3-217ENST00000574022 ABCA8O94911 1581 aa0.48□□□□□ -2.33
CHD3-217ENST00000574022 URB2Q14146 1524 aaKnown RBP0.48□□□□□ -2.33
CHD3-217ENST00000574022 POLR1AO95602 1720 aaPredicted RBP0.47□□□□□ -2.33
CHD3-217ENST00000574022 KRTAP19-3Q7Z4W3 81 aa0.47□□□□□ -2.33
CHD3-217ENST00000574022 USMG5Q96IX5 58 aa0.47□□□□□ -2.33
CHD3-217ENST00000574022 TTC28Q96AY4 2481 aa0.47□□□□□ -2.33
CHD3-217ENST00000574022 TRIOBPQ9H2D6 2365 aa0.47□□□□□ -2.33
CHD3-217ENST00000574022 FMN2Q9NZ56 1722 aa0.47□□□□□ -2.33
CHD3-217ENST00000574022 ANKARQ7Z5J8 1434 aa0.47□□□□□ -2.33
CHD3-217ENST00000574022 CACNA1HO95180 2353 aa0.46□□□□□ -2.34
CHD3-217ENST00000574022 CEP170BQ9Y4F5 1589 aaPredicted RBP0.46□□□□□ -2.34
CHD3-217ENST00000574022 K7EQZ3 153 aa0.46□□□□□ -2.34
CHD3-217ENST00000574022 COX6B1P14854 86 aa0.46□□□□□ -2.34
CHD3-217ENST00000574022 ATP5EP2Q5VTU8 51 aa0.46□□□□□ -2.34
CHD3-217ENST00000574022 SPINK6Q6UWN8 80 aa0.46□□□□□ -2.34
CHD3-217ENST00000574022 KRTAP5-2Q701N4 177 aa0.46□□□□□ -2.34
CHD3-217ENST00000574022 MAGI3Q5TCQ9 1506 aa0.46□□□□□ -2.34
CHD3-217ENST00000574022 TIAM2Q8IVF5 1701 aa0.46□□□□□ -2.34
CHD3-217ENST00000574022 MUC19Q7Z5P9 8384 aa0.46□□□□□ -2.34
CHD3-217ENST00000574022 ZNF831Q5JPB2 1677 aa0.46□□□□□ -2.34
CHD3-217ENST00000574022 FBN3Q75N90 2809 aa0.46□□□□□ -2.34
CHD3-217ENST00000574022 TSC2P49815 1807 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 AHCTF1Q8WYP5 2266 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 SCN11AQ9UI33 1791 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 ANKRD17O75179 2603 aaKnown RBP0.45□□□□□ -2.34
CHD3-217ENST00000574022 MYO5CQ9NQX4 1742 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 POLQO75417 2590 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 SPTY2D1-AS1A0A0U1RR47 76 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 NDUFB1O75438 58 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 COX8AP10176 69 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 WFDC9Q8NEX5 89 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 GAFA1Q96PS6 74 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 CRIPTQ9P021 101 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 CRCT1Q9UGL9 99 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 CCDC88BA6NC98 1476 aa0.45□□□□□ -2.34
CHD3-217ENST00000574022 NCOA2Q15596 1464 aa0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms