RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 SEC11CQ9BY50 192 aa4.65□□□□□ -1.67
NUP88-205ENST00000572809 CYSLTR1Q9Y271 337 aa4.65□□□□□ -1.67
NUP88-205ENST00000572809 TRAV9-1A0A075B6T8 112 aa4.64□□□□□ -1.67
NUP88-205ENST00000572809 TGIF2-C20orf24A0A0A6YYL0 155 aa4.64□□□□□ -1.67
NUP88-205ENST00000572809 A0A0J9YXV3 536 aa4.64□□□□□ -1.67
NUP88-205ENST00000572809 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.64□□□□□ -1.67
NUP88-205ENST00000572809 S100PP25815 95 aa4.64□□□□□ -1.67
NUP88-205ENST00000572809 G0S2P27469 103 aa4.64□□□□□ -1.67
NUP88-205ENST00000572809 KIAA1644Q3SXP7 199 aa4.64□□□□□ -1.67
NUP88-205ENST00000572809 LINC00242Q5T6M2 205 aa4.64□□□□□ -1.67
NUP88-205ENST00000572809 TEX43Q6ZNM6 134 aa4.64□□□□□ -1.67
NUP88-205ENST00000572809 VCX2Q9H322 139 aa4.64□□□□□ -1.67
NUP88-205ENST00000572809 NXT2Q9NPJ8 142 aaKnown RBP4.64□□□□□ -1.67
NUP88-205ENST00000572809 IGLV5-37A0A075B6J1 123 aa4.63□□□□□ -1.67
NUP88-205ENST00000572809 A0A087WZ39 114 aa4.63□□□□□ -1.67
NUP88-205ENST00000572809 A0A1W2PNN7 141 aa4.63□□□□□ -1.67
NUP88-205ENST00000572809 NDUFA1O15239 70 aa4.63□□□□□ -1.67
NUP88-205ENST00000572809 UBE2D1P51668 147 aa4.63□□□□□ -1.67
NUP88-205ENST00000572809 RPL18AQ02543 176 aaKnown RBP4.63□□□□□ -1.67
NUP88-205ENST00000572809 UNQ6190/PRO20217Q6UXQ8 127 aa4.63□□□□□ -1.67
NUP88-205ENST00000572809 Q6ZN92 141 aa4.63□□□□□ -1.67
NUP88-205ENST00000572809 AMELXQ99217 191 aa4.63□□□□□ -1.67
NUP88-205ENST00000572809 C2orf88Q9BSF0 95 aa4.63□□□□□ -1.67
NUP88-205ENST00000572809 GNB1LQ9BYB4 327 aa4.63□□□□□ -1.67
NUP88-205ENST00000572809 MRPL35Q9NZE8 188 aaKnown RBP4.63□□□□□ -1.67
NUP88-205ENST00000572809 HERC1Q15751 4861 aa4.63□□□□□ -1.67
NUP88-205ENST00000572809 IGIPA6NJ69 53 aa4.62□□□□□ -1.67
NUP88-205ENST00000572809 PRR3P79522 188 aaKnown RBP4.62□□□□□ -1.67
NUP88-205ENST00000572809 KIAA0087Q14695 138 aa4.62□□□□□ -1.67
NUP88-205ENST00000572809 C9orf116Q5BN46 136 aaPredicted RBP4.62□□□□□ -1.67
NUP88-205ENST00000572809 ZC2HC1BQ5TFG8 222 aa4.62□□□□□ -1.67
NUP88-205ENST00000572809 Q6ZRP5 223 aa4.62□□□□□ -1.67
NUP88-205ENST00000572809 COMMD7Q86VX2 200 aa4.62□□□□□ -1.67
NUP88-205ENST00000572809 LINC01561Q8N1V8 128 aa4.62□□□□□ -1.67
NUP88-205ENST00000572809 TLX1NBP0CAT3 122 aa4.61□□□□□ -1.67
NUP88-205ENST00000572809 COX19Q49B96 90 aa4.61□□□□□ -1.67
NUP88-205ENST00000572809 C10orf91Q5T1B1 145 aa4.61□□□□□ -1.67
NUP88-205ENST00000572809 LINC00173Q6ZV60 143 aa4.61□□□□□ -1.67
NUP88-205ENST00000572809 Q75L30 129 aa4.61□□□□□ -1.67
NUP88-205ENST00000572809 FAM19A3Q7Z5A8 133 aa4.61□□□□□ -1.67
NUP88-205ENST00000572809 TOMM6Q96B49 74 aa4.61□□□□□ -1.67
NUP88-205ENST00000572809 RPS10P5Q9NQ39 176 aa4.61□□□□□ -1.67
NUP88-205ENST00000572809 C6orf48Q9UBA6 75 aa4.61□□□□□ -1.67
NUP88-205ENST00000572809 LRP1Q07954 4544 aaKnown RBP4.6□□□□□ -1.67
NUP88-205ENST00000572809 MT1HL1P0DM35 61 aa4.6□□□□□ -1.67
NUP88-205ENST00000572809 SEC11AP67812 179 aa4.6□□□□□ -1.67
NUP88-205ENST00000572809 SRSF9Q13242 221 aaKnown RBP eCLIP4.6□□□□□ -1.67
NUP88-205ENST00000572809 C6orf226Q5I0X4 101 aa4.6□□□□□ -1.67
NUP88-205ENST00000572809 SPINK6Q6UWN8 80 aa4.6□□□□□ -1.67
NUP88-205ENST00000572809 ERASQ7Z444 233 aa4.6□□□□□ -1.67
NUP88-205ENST00000572809 PACRGQ96M98 296 aaPredicted RBP4.6□□□□□ -1.67
NUP88-205ENST00000572809 SCGB3A1Q96QR1 104 aa4.6□□□□□ -1.67
NUP88-205ENST00000572809 TIMM17AQ99595 171 aa4.6□□□□□ -1.67
NUP88-205ENST00000572809 ALKBH7Q9BT30 221 aaPredicted RBP4.6□□□□□ -1.67
NUP88-205ENST00000572809 CARHSP1Q9Y2V2 147 aaKnown RBP4.6□□□□□ -1.67
NUP88-205ENST00000572809 TRBV30A0A0K0K1B3 111 aa4.59□□□□□ -1.67
NUP88-205ENST00000572809 LINC01546A6NGU7 62 aa4.59□□□□□ -1.67
NUP88-205ENST00000572809 LINC01549A6NIU2 74 aa4.59□□□□□ -1.67
NUP88-205ENST00000572809 MT-ND6P03923 174 aa4.59□□□□□ -1.67
NUP88-205ENST00000572809 HERVK_113P63121 156 aa4.59□□□□□ -1.67
NUP88-205ENST00000572809 FABP9Q0Z7S8 132 aa4.59□□□□□ -1.67
NUP88-205ENST00000572809 RHEBQ15382 184 aa4.59□□□□□ -1.67
NUP88-205ENST00000572809 C2orf82Q6UX34 121 aa4.59□□□□□ -1.67
NUP88-205ENST00000572809 PHF5AQ7RTV0 110 aaKnown RBP4.59□□□□□ -1.67
NUP88-205ENST00000572809 GEMIN7Q9H840 131 aaKnown RBP4.59□□□□□ -1.67
NUP88-205ENST00000572809 TOMM7Q9P0U1 55 aa4.59□□□□□ -1.67
NUP88-205ENST00000572809 CKS1BP61024 79 aa4.58□□□□□ -1.68
NUP88-205ENST00000572809 REG3GQ6UW15 175 aa4.58□□□□□ -1.68
NUP88-205ENST00000572809 Q8IZM0 81 aa4.58□□□□□ -1.68
NUP88-205ENST00000572809 LINC01600Q96MT4 127 aa4.58□□□□□ -1.68
NUP88-205ENST00000572809 CDKN2A-AS1Q9UH64 79 aa4.58□□□□□ -1.68
NUP88-205ENST00000572809 PSORS1C2Q9UIG4 136 aa4.58□□□□□ -1.68
NUP88-205ENST00000572809 PKHD1L1Q86WI1 4243 aa4.57□□□□□ -1.68
NUP88-205ENST00000572809 FAM168BA1KXE4 195 aa4.57□□□□□ -1.68
NUP88-205ENST00000572809 NDUFC2-KCTD14E9PQ53 114 aa4.57□□□□□ -1.68
NUP88-205ENST00000572809 KRTAP10-7P60409 375 aaPredicted RBP4.57□□□□□ -1.68
NUP88-205ENST00000572809 C1orf137Q5JT78 98 aa4.57□□□□□ -1.68
NUP88-205ENST00000572809 FA2HQ7L5A8 372 aa4.57□□□□□ -1.68
NUP88-205ENST00000572809 SMCO4Q9NRQ5 59 aa4.57□□□□□ -1.68
NUP88-205ENST00000572809 FAT3Q8TDW7 4589 aa4.56□□□□□ -1.68
NUP88-205ENST00000572809 TINCRA0A1B0GVN0 87 aa4.56□□□□□ -1.68
NUP88-205ENST00000572809 APOC3P02656 99 aa4.56□□□□□ -1.68
NUP88-205ENST00000572809 IGKV2-30P06310 120 aa4.56□□□□□ -1.68
NUP88-205ENST00000572809 KRTAP5-11Q6L8G4 156 aa4.56□□□□□ -1.68
NUP88-205ENST00000572809 FAM19A5Q7Z5A7 132 aaPredicted RBP4.56□□□□□ -1.68
NUP88-205ENST00000572809 LINC00469Q8N7U9 141 aa4.56□□□□□ -1.68
NUP88-205ENST00000572809 CST9LQ9H4G1 147 aa4.56□□□□□ -1.68
NUP88-205ENST00000572809 TRAPPC1Q9Y5R8 145 aa4.56□□□□□ -1.68
NUP88-205ENST00000572809 F8VRH5 84 aa4.55□□□□□ -1.68
NUP88-205ENST00000572809 SNAPINO95295 136 aa4.55□□□□□ -1.68
NUP88-205ENST00000572809 LINC00614P0C842 121 aa4.55□□□□□ -1.68
NUP88-205ENST00000572809 KRTAP10-8P60410 259 aa4.55□□□□□ -1.68
NUP88-205ENST00000572809 PMVKQ15126 192 aa4.55□□□□□ -1.68
NUP88-205ENST00000572809 NDUFA5Q16718 116 aa4.55□□□□□ -1.68
NUP88-205ENST00000572809 PDZD11Q5EBL8 140 aa4.55□□□□□ -1.68
NUP88-205ENST00000572809 C9orf129Q5T035 196 aaKnown RBP4.55□□□□□ -1.68
NUP88-205ENST00000572809 KRTAP7-1Q8IUC3 87 aa4.55□□□□□ -1.68
NUP88-205ENST00000572809 IGLV5-45A0A087WSX0 123 aa4.54□□□□□ -1.68
NUP88-205ENST00000572809 M0QXV9 152 aa4.54□□□□□ -1.68
NUP88-205ENST00000572809 IGLV7-43P04211 117 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms