RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TP53TG3Q9ULZ0 132 aa4□□□□□ -1.77
VPS53-212ENST00000572259 KMT2AQ03164 3969 aa4□□□□□ -1.77
VPS53-212ENST00000572259 TRAV1-1A0A0B4J248 108 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 TRGV4A0A0C4DH28 118 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 IGHV1-58A0A0C4DH39 117 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 LOC107984640A0A0U1RRK4 108 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 MT-ND4LP03901 98 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 IGLC6P0CF74 106 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 LINC00694P0DN24 101 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 PRR9Q5T870 116 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 CST9LQ9H4G1 147 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 XAGE1AQ9HD64 81 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 PRO0255Q9UI72 69 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 PHLDA3Q9Y5J5 127 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 VPS13DQ5THJ4 4388 aa3.99□□□□□ -1.77
VPS53-212ENST00000572259 RYR3Q15413 4870 aa3.98□□□□□ -1.77
VPS53-212ENST00000572259 A0A0J9YY99 117 aa3.98□□□□□ -1.77
VPS53-212ENST00000572259 TRBV6-1A0A0K0K1D8 114 aa3.98□□□□□ -1.77
VPS53-212ENST00000572259 GNRH2O43555 120 aa3.98□□□□□ -1.77
VPS53-212ENST00000572259 IGHV3-30-3P0DP02 117 aa3.98□□□□□ -1.77
VPS53-212ENST00000572259 SH2D6Q7Z4S9 175 aa3.98□□□□□ -1.77
VPS53-212ENST00000572259 TVP23CQ96ET8 276 aa3.98□□□□□ -1.77
VPS53-212ENST00000572259 HHLA3Q9XRX5 114 aa3.98□□□□□ -1.77
VPS53-212ENST00000572259 ICOSQ9Y6W8 199 aa3.98□□□□□ -1.77
VPS53-212ENST00000572259 DNAH6Q9C0G6 4158 aa3.98□□□□□ -1.77
VPS53-212ENST00000572259 IGHV3-53P01767 116 aa3.97□□□□□ -1.77
VPS53-212ENST00000572259 ASIPP42127 132 aa3.97□□□□□ -1.77
VPS53-212ENST00000572259 TSPEAR-AS2P59090 65 aa3.97□□□□□ -1.77
VPS53-212ENST00000572259 PKIAP61925 76 aa3.97□□□□□ -1.77
VPS53-212ENST00000572259 HIST1H4AP62805 103 aaKnown RBP3.97□□□□□ -1.77
VPS53-212ENST00000572259 SYCNQ0VAF6 134 aa3.97□□□□□ -1.77
VPS53-212ENST00000572259 MRPL51Q4U2R6 128 aaKnown RBP3.97□□□□□ -1.77
VPS53-212ENST00000572259 TEX261Q6UWH6 196 aa3.97□□□□□ -1.77
VPS53-212ENST00000572259 Q6ZQT7 251 aa3.97□□□□□ -1.77
VPS53-212ENST00000572259 Q86TA4 180 aa3.97□□□□□ -1.77
VPS53-212ENST00000572259 BAGE2Q86Y30 109 aa3.97□□□□□ -1.77
VPS53-212ENST00000572259 GNG13Q9P2W3 67 aa3.97□□□□□ -1.77
VPS53-212ENST00000572259 RYR2Q92736 4967 aa3.97□□□□□ -1.77
VPS53-212ENST00000572259 A8MWV9 139 aa3.96□□□□□ -1.78
VPS53-212ENST00000572259 C1orf196B1AJZ1 125 aa3.96□□□□□ -1.78
VPS53-212ENST00000572259 LINC01554Q52M75 96 aa3.96□□□□□ -1.78
VPS53-212ENST00000572259 C9orf129Q5T035 196 aaKnown RBP3.96□□□□□ -1.78
VPS53-212ENST00000572259 PHF5AQ7RTV0 110 aaKnown RBP3.96□□□□□ -1.78
VPS53-212ENST00000572259 CIRBP-AS1Q8TBR5 109 aa3.96□□□□□ -1.78
VPS53-212ENST00000572259 IGLV2-18A0A075B6J9 118 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 H3BMG7 143 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 M0R143 59 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 M0R2N4 97 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 SH2D1AO60880 128 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 SFTA3P0C7M3 94 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 FABP2P12104 132 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 UBE2BP63146 152 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 MEF2BQ02080 365 aaPredicted RBP3.95□□□□□ -1.78
VPS53-212ENST00000572259 C1orf134Q5TEV5 83 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 KRTAP5-4Q6L8H1 288 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 SPATA12Q7Z6I5 190 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 C9orf62Q8N4C0 152 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 C3orf22Q8N5N4 141 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 ZC2HC1AQ96GY0 325 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 MED9Q9NWA0 146 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 HYDINQ4G0P3 5121 aa3.95□□□□□ -1.78
VPS53-212ENST00000572259 A0A096LPF7 62 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 TRAV13-1A0A0B4J241 112 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 IGKV3D-20A0A0C4DH25 116 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 TRBV6-4A0A1B0GX49 114 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 CXCL1P09341 107 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 ARMS2P0C7Q2 107 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 MGST1P10620 155 aaKnown RBP3.94□□□□□ -1.78
VPS53-212ENST00000572259 RNASE3P12724 160 aaKnown RBP3.94□□□□□ -1.78
VPS53-212ENST00000572259 GNG4P50150 75 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 RHOHQ15669 191 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 ESRGQ1W209 222 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 ALKAL2Q6UX46 152 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 ZFP2Q6ZN57 461 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 UPK3BQ9BT76 320 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 TMEM191AQ9H0A3 160 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 LINC00588Q9Y4M8 146 aa3.94□□□□□ -1.78
VPS53-212ENST00000572259 TMSB15BA0A087X1C1 80 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 NBDYA0A0U1RRE5 68 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 GRIFINA4D1Z8 144 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 H3BVH4 76 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 TMEM256-PLSCR3K7ERE1 68 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 LEPROTO15243 131 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 CRIP1P50238 77 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 HBBP68871 147 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 SPANXN1Q5VSR9 72 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 CFAP126Q5VTH2 177 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 LYPD5Q6UWN5 251 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 KRTAP4-4Q9BYR3 166 aa3.93□□□□□ -1.78
VPS53-212ENST00000572259 A0A1B0GVG6 124 aa3.92□□□□□ -1.78
VPS53-212ENST00000572259 TMEM218A2RU14 115 aa3.92□□□□□ -1.78
VPS53-212ENST00000572259 FOXA3P55318 350 aaPredicted RBP3.92□□□□□ -1.78
VPS53-212ENST00000572259 C10orf91Q5T1B1 145 aa3.92□□□□□ -1.78
VPS53-212ENST00000572259 Q6ZR54 194 aa3.92□□□□□ -1.78
VPS53-212ENST00000572259 BRK1Q8WUW1 75 aa3.92□□□□□ -1.78
VPS53-212ENST00000572259 DNAH10Q8IVF4 4471 aa3.92□□□□□ -1.78
VPS53-212ENST00000572259 A0A087WWC5 75 aa3.91□□□□□ -1.78
VPS53-212ENST00000572259 IGHV3-73A0A0B4J1V6 119 aa3.91□□□□□ -1.78
VPS53-212ENST00000572259 TRBV27A0A0K0K1C4 114 aa3.91□□□□□ -1.78
VPS53-212ENST00000572259 FAM168BA1KXE4 195 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms