RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 LINC00469Q8N7U9 141 aa3.27□□□□□ -1.89
VPS53-208ENST00000570650 KIR2DL4Q99706 377 aa3.27□□□□□ -1.89
VPS53-208ENST00000570650 XAGE1AQ9HD64 81 aa3.27□□□□□ -1.89
VPS53-208ENST00000570650 MANBALQ9NQG1 85 aa3.27□□□□□ -1.89
VPS53-208ENST00000570650 GNG13Q9P2W3 67 aa3.27□□□□□ -1.89
VPS53-208ENST00000570650 TRBV20OR9-2A0A075B6H5 130 aa3.26□□□□□ -1.89
VPS53-208ENST00000570650 TGIF2-C20orf24A0A0A6YYL0 155 aa3.26□□□□□ -1.89
VPS53-208ENST00000570650 A0A1B0GVG6 124 aa3.26□□□□□ -1.89
VPS53-208ENST00000570650 HBBP68871 147 aa3.26□□□□□ -1.89
VPS53-208ENST00000570650 RPL37AP8A6NKH3 93 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 PDE6DO43924 150 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 PPP1R17O96001 155 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 RAB4AP20338 218 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 MRPS36P82909 103 aaKnown RBP3.25□□□□□ -1.89
VPS53-208ENST00000570650 C3orf22Q8N5N4 141 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 FAM104AQ969W3 186 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 BORCS7Q96B45 105 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 LINC00167Q96N53 147 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 TMEM191AQ9H0A3 160 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 SPANXA1Q9NS26 97 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 MED9Q9NWA0 146 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 NDUFA13Q9P0J0 144 aa3.25□□□□□ -1.89
VPS53-208ENST00000570650 SMKR1H3BMG3 65 aa3.24□□□□□ -1.89
VPS53-208ENST00000570650 K7EN84 100 aa3.24□□□□□ -1.89
VPS53-208ENST00000570650 PPP1R2P9O14990 202 aa3.24□□□□□ -1.89
VPS53-208ENST00000570650 ARPC5O15511 151 aa3.24□□□□□ -1.89
VPS53-208ENST00000570650 RPL39P62891 51 aaKnown RBP3.24□□□□□ -1.89
VPS53-208ENST00000570650 AMN1Q8IY45 258 aa3.24□□□□□ -1.89
VPS53-208ENST00000570650 LINC01561Q8N1V8 128 aa3.24□□□□□ -1.89
VPS53-208ENST00000570650 DAND5Q8N907 189 aa3.24□□□□□ -1.89
VPS53-208ENST00000570650 A0A1B0GUT8 65 aa3.23□□□□□ -1.89
VPS53-208ENST00000570650 A8MWL6 223 aa3.23□□□□□ -1.89
VPS53-208ENST00000570650 M0R2T5 61 aa3.23□□□□□ -1.89
VPS53-208ENST00000570650 TCAPO15273 167 aa3.23□□□□□ -1.89
VPS53-208ENST00000570650 GATCO43716 136 aaKnown RBP3.23□□□□□ -1.89
VPS53-208ENST00000570650 CKS1BP61024 79 aa3.23□□□□□ -1.89
VPS53-208ENST00000570650 RPL32P62910 135 aaKnown RBP3.23□□□□□ -1.89
VPS53-208ENST00000570650 PNRC1Q12796 327 aaPredicted RBP3.23□□□□□ -1.89
VPS53-208ENST00000570650 KRTAP5-11Q6L8G4 156 aa3.23□□□□□ -1.89
VPS53-208ENST00000570650 OCC1Q8TAD7 63 aa3.23□□□□□ -1.89
VPS53-208ENST00000570650 TOMM7Q9P0U1 55 aa3.23□□□□□ -1.89
VPS53-208ENST00000570650 NDUFA12Q9UI09 145 aa3.23□□□□□ -1.89
VPS53-208ENST00000570650 TEX46H3BTG2 121 aa3.22□□□□□ -1.89
VPS53-208ENST00000570650 PRLHP81277 87 aa3.22□□□□□ -1.89
VPS53-208ENST00000570650 C6orf226Q5I0X4 101 aa3.22□□□□□ -1.89
VPS53-208ENST00000570650 HIGD1CA8MV81 97 aa3.21□□□□□ -1.9
VPS53-208ENST00000570650 SPINK1P00995 79 aa3.21□□□□□ -1.9
VPS53-208ENST00000570650 IFI27P40305 119 aaPredicted RBP3.21□□□□□ -1.9
VPS53-208ENST00000570650 Q6ZN92 141 aa3.21□□□□□ -1.9
VPS53-208ENST00000570650 FAM231DQ6ZW35 169 aa3.21□□□□□ -1.9
VPS53-208ENST00000570650 FAM19A1Q7Z5A9 133 aa3.21□□□□□ -1.9
VPS53-208ENST00000570650 Q8IZM0 81 aa3.21□□□□□ -1.9
VPS53-208ENST00000570650 NKAPP1Q8N9T2 125 aa3.21□□□□□ -1.9
VPS53-208ENST00000570650 PLEKHB2Q96CS7 222 aa3.21□□□□□ -1.9
VPS53-208ENST00000570650 C20orf78Q9BR46 151 aa3.21□□□□□ -1.9
VPS53-208ENST00000570650 ALKBH7Q9BT30 221 aaPredicted RBP3.21□□□□□ -1.9
VPS53-208ENST00000570650 IGLV8-61A0A075B6I0 122 aa3.2□□□□□ -1.9
VPS53-208ENST00000570650 IGLV4-3A0A075B6K6 122 aa3.2□□□□□ -1.9
VPS53-208ENST00000570650 IGKV2-28A0A075B6P5 120 aa3.2□□□□□ -1.9
VPS53-208ENST00000570650 F8VRH5 84 aa3.2□□□□□ -1.9
VPS53-208ENST00000570650 IGKV2D-28P01615 120 aa3.2□□□□□ -1.9
VPS53-208ENST00000570650 RIGQ13278 110 aa3.2□□□□□ -1.9
VPS53-208ENST00000570650 ZNF345Q14585 488 aa3.2□□□□□ -1.9
VPS53-208ENST00000570650 CBLN2Q8IUK8 224 aa3.2□□□□□ -1.9
VPS53-208ENST00000570650 FAM19A2Q8N3H0 131 aa3.2□□□□□ -1.9
VPS53-208ENST00000570650 Q8NBF4 154 aa3.2□□□□□ -1.9
VPS53-208ENST00000570650 GNB1LQ9BYB4 327 aa3.2□□□□□ -1.9
VPS53-208ENST00000570650 TRBV24-1A0A075B6N3 115 aa3.19□□□□□ -1.9
VPS53-208ENST00000570650 KANTRA0A1W2PQU2 76 aa3.19□□□□□ -1.9
VPS53-208ENST00000570650 LINC00862A6NCI5 91 aa3.19□□□□□ -1.9
VPS53-208ENST00000570650 PRSS47A8MTI9 375 aa3.19□□□□□ -1.9
VPS53-208ENST00000570650 TAGLN2P37802 199 aaKnown RBP3.19□□□□□ -1.9
VPS53-208ENST00000570650 MRPL51Q4U2R6 128 aaKnown RBP3.19□□□□□ -1.9
VPS53-208ENST00000570650 PCOTHQ58A44 107 aa3.19□□□□□ -1.9
VPS53-208ENST00000570650 TEX43Q6ZNM6 134 aa3.19□□□□□ -1.9
VPS53-208ENST00000570650 TMEM141Q96I45 108 aa3.19□□□□□ -1.9
VPS53-208ENST00000570650 C2orf88Q9BSF0 95 aa3.19□□□□□ -1.9
VPS53-208ENST00000570650 SMIM2Q9BVW6 85 aa3.19□□□□□ -1.9
VPS53-208ENST00000570650 TMEM126AQ9H061 195 aa3.19□□□□□ -1.9
VPS53-208ENST00000570650 PYGO1Q9Y3Y4 419 aa3.19□□□□□ -1.9
VPS53-208ENST00000570650 SCO1O75880 301 aa3.18□□□□□ -1.9
VPS53-208ENST00000570650 CXCL5P42830 114 aa3.18□□□□□ -1.9
VPS53-208ENST00000570650 RPS29P62273 56 aaKnown RBP3.18□□□□□ -1.9
VPS53-208ENST00000570650 FAM104BQ5XKR9 115 aa3.18□□□□□ -1.9
VPS53-208ENST00000570650 Q8N377 158 aa3.18□□□□□ -1.9
VPS53-208ENST00000570650 SPRR4Q96PI1 79 aa3.18□□□□□ -1.9
VPS53-208ENST00000570650 HIGD2AQ9BW72 106 aa3.18□□□□□ -1.9
VPS53-208ENST00000570650 EIF5A2Q9GZV4 153 aaKnown RBP3.18□□□□□ -1.9
VPS53-208ENST00000570650 TMEM238C9JI98 176 aa3.17□□□□□ -1.9
VPS53-208ENST00000570650 SMLR1H3BR10 107 aa3.17□□□□□ -1.9
VPS53-208ENST00000570650 M0R378 163 aa3.17□□□□□ -1.9
VPS53-208ENST00000570650 SLC25A20O43772 301 aa3.17□□□□□ -1.9
VPS53-208ENST00000570650 CFC1P0CG37 223 aa3.17□□□□□ -1.9
VPS53-208ENST00000570650 CKS2P33552 79 aa3.17□□□□□ -1.9
VPS53-208ENST00000570650 LCE1EQ5T753 118 aa3.17□□□□□ -1.9
VPS53-208ENST00000570650 ZNF706Q9Y5V0 76 aaPredicted RBP3.17□□□□□ -1.9
VPS53-208ENST00000570650 HMSDA8MTL9 139 aa3.16□□□□□ -1.9
VPS53-208ENST00000570650 NPYP01303 97 aa3.16□□□□□ -1.9
VPS53-208ENST00000570650 RAB5AP20339 215 aa3.16□□□□□ -1.9
VPS53-208ENST00000570650 HERVK_113P63121 156 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms