RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 ADCYAP1P18509 176 aa2.97□□□□□ -1.93
CLK3-219ENST00000567805 UBE2D1P51668 147 aa2.97□□□□□ -1.93
CLK3-219ENST00000567805 C9orf116Q5BN46 136 aaPredicted RBP2.97□□□□□ -1.93
CLK3-219ENST00000567805 PAPPA-AS1Q5QFB9 102 aa2.97□□□□□ -1.93
CLK3-219ENST00000567805 LINC00242Q5T6M2 205 aa2.97□□□□□ -1.93
CLK3-219ENST00000567805 REG3GQ6UW15 175 aa2.97□□□□□ -1.93
CLK3-219ENST00000567805 LINC01561Q8N1V8 128 aa2.97□□□□□ -1.93
CLK3-219ENST00000567805 LINC01600Q96MT4 127 aa2.97□□□□□ -1.93
CLK3-219ENST00000567805 AMELXQ99217 191 aa2.97□□□□□ -1.93
CLK3-219ENST00000567805 SEC11CQ9BY50 192 aa2.97□□□□□ -1.93
CLK3-219ENST00000567805 VCX2Q9H322 139 aa2.97□□□□□ -1.93
CLK3-219ENST00000567805 TRBV30A0A0K0K1B3 111 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 IGIPA6NJ69 53 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 S100PP25815 95 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 SEC11AP67812 179 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 IFITM2Q01629 132 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 SRSF9Q13242 221 aaKnown RBP eCLIP2.96□□□□□ -1.94
CLK3-219ENST00000567805 KIAA0087Q14695 138 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 C10orf25Q5T742 122 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 UNQ6190/PRO20217Q6UXQ8 127 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 LINC00173Q6ZV60 143 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 FAM19A3Q7Z5A8 133 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 TIMM17AQ99595 171 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 C6orf48Q9UBA6 75 aa2.96□□□□□ -1.94
CLK3-219ENST00000567805 LINC01549A6NIU2 74 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 NDUFC2-KCTD14E9PQ53 114 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 MT-ND6P03923 174 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 PRSS2P07478 247 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 HERVK_113P63121 156 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 KIAA1644Q3SXP7 199 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 COX19Q49B96 90 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 ZC2HC1BQ5TFG8 222 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 PHF5AQ7RTV0 110 aaKnown RBP2.95□□□□□ -1.94
CLK3-219ENST00000567805 ERASQ7Z444 233 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 COMMD7Q86VX2 200 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 Q8IZM0 81 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 TOMM6Q96B49 74 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 PACRGQ96M98 296 aaPredicted RBP2.95□□□□□ -1.94
CLK3-219ENST00000567805 GNB1LQ9BYB4 327 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 PSORS1C2Q9UIG4 136 aa2.95□□□□□ -1.94
CLK3-219ENST00000567805 FAM168BA1KXE4 195 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 LINC01546A6NGU7 62 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 LINC00310P59036 64 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 CKS1BP61024 79 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 RHEBQ15382 184 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 GAGE2EQ4V326 116 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 C6orf226Q5I0X4 101 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 C1orf137Q5JT78 98 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 C10orf91Q5T1B1 145 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 C2orf82Q6UX34 121 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 FAM19A5Q7Z5A7 132 aaPredicted RBP2.94□□□□□ -1.94
CLK3-219ENST00000567805 SCGB3A1Q96QR1 104 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 ALKBH7Q9BT30 221 aaPredicted RBP2.94□□□□□ -1.94
CLK3-219ENST00000567805 GEMIN7Q9H840 131 aaKnown RBP2.94□□□□□ -1.94
CLK3-219ENST00000567805 TOMM7Q9P0U1 55 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 GAGE2DQ9UEU5 116 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 CDKN2A-AS1Q9UH64 79 aa2.94□□□□□ -1.94
CLK3-219ENST00000567805 UBR4Q5T4S7 5183 aa2.93□□□□□ -1.94
CLK3-219ENST00000567805 TINCRA0A1B0GVN0 87 aa2.93□□□□□ -1.94
CLK3-219ENST00000567805 F8VRH5 84 aa2.93□□□□□ -1.94
CLK3-219ENST00000567805 M0QXV9 152 aa2.93□□□□□ -1.94
CLK3-219ENST00000567805 IGLV7-43P04211 117 aa2.93□□□□□ -1.94
CLK3-219ENST00000567805 CXCL5P42830 114 aa2.93□□□□□ -1.94
CLK3-219ENST00000567805 KRTAP10-8P60410 259 aa2.93□□□□□ -1.94
CLK3-219ENST00000567805 LINC00469Q8N7U9 141 aa2.93□□□□□ -1.94
CLK3-219ENST00000567805 RPS10P5Q9NQ39 176 aa2.93□□□□□ -1.94
CLK3-219ENST00000567805 SMCO4Q9NRQ5 59 aa2.93□□□□□ -1.94
CLK3-219ENST00000567805 CARHSP1Q9Y2V2 147 aaKnown RBP2.93□□□□□ -1.94
CLK3-219ENST00000567805 IGLV5-45A0A087WSX0 123 aa2.92□□□□□ -1.94
CLK3-219ENST00000567805 SMIM1B2RUZ4 78 aa2.92□□□□□ -1.94
CLK3-219ENST00000567805 TRIAP1O43715 76 aa2.92□□□□□ -1.94
CLK3-219ENST00000567805 UBE2BP63146 152 aa2.92□□□□□ -1.94
CLK3-219ENST00000567805 FABP9Q0Z7S8 132 aa2.92□□□□□ -1.94
CLK3-219ENST00000567805 PMVKQ15126 192 aa2.92□□□□□ -1.94
CLK3-219ENST00000567805 PDZD11Q5EBL8 140 aa2.92□□□□□ -1.94
CLK3-219ENST00000567805 C9orf129Q5T035 196 aaKnown RBP2.92□□□□□ -1.94
CLK3-219ENST00000567805 FA2HQ7L5A8 372 aa2.92□□□□□ -1.94
CLK3-219ENST00000567805 KRTAP7-1Q8IUC3 87 aa2.92□□□□□ -1.94
CLK3-219ENST00000567805 DIRC1Q969H9 104 aa2.92□□□□□ -1.94
CLK3-219ENST00000567805 CST9LQ9H4G1 147 aa2.92□□□□□ -1.94
CLK3-219ENST00000567805 H0Y9J4 135 aa2.91□□□□□ -1.94
CLK3-219ENST00000567805 H3BRM9 83 aa2.91□□□□□ -1.94
CLK3-219ENST00000567805 KRTAP11-1Q8IUC1 163 aa2.91□□□□□ -1.94
CLK3-219ENST00000567805 SLC7A5P1Q8MH63 180 aa2.91□□□□□ -1.94
CLK3-219ENST00000567805 COX7B2Q8TF08 81 aa2.91□□□□□ -1.94
CLK3-219ENST00000567805 TP73-AS1Q9UF72 201 aa2.91□□□□□ -1.94
CLK3-219ENST00000567805 TRAPPC1Q9Y5R8 145 aa2.91□□□□□ -1.94
CLK3-219ENST00000567805 NUPR1O60356 82 aa2.9□□□□□ -1.95
CLK3-219ENST00000567805 SNAPINO95295 136 aa2.9□□□□□ -1.95
CLK3-219ENST00000567805 SPINK8P0C7L1 97 aa2.9□□□□□ -1.95
CLK3-219ENST00000567805 LINC00614P0C842 121 aa2.9□□□□□ -1.95
CLK3-219ENST00000567805 IGLC3P0DOY3 106 aa2.9□□□□□ -1.95
CLK3-219ENST00000567805 LBHQ53QV2 105 aaPredicted RBP2.9□□□□□ -1.95
CLK3-219ENST00000567805 SVBPQ8N300 66 aa2.9□□□□□ -1.95
CLK3-219ENST00000567805 C18orf32Q8TCD1 76 aa2.9□□□□□ -1.95
CLK3-219ENST00000567805 XAGE1AQ9HD64 81 aa2.9□□□□□ -1.95
CLK3-219ENST00000567805 C22orf24Q9Y442 160 aa2.9□□□□□ -1.95
CLK3-219ENST00000567805 LRP2P98164 4655 aa2.89□□□□□ -1.95
CLK3-219ENST00000567805 IGLV1-50A0A075B6I6 118 aa2.89□□□□□ -1.95
CLK3-219ENST00000567805 A0A096LNJ9 63 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms