RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 HIGD2BQ4VC39 106 aa8.95□□□□□ -0.98
VPS39-206ENST00000562662 CFAP161Q6P656 301 aa8.95□□□□□ -0.98
VPS39-206ENST00000562662 C6orf223Q8N319 242 aa8.95□□□□□ -0.98
VPS39-206ENST00000562662 HYDINQ4G0P3 5121 aa8.94□□□□□ -0.98
VPS39-206ENST00000562662 USP17L23D6RBM5 183 aa8.94□□□□□ -0.98
VPS39-206ENST00000562662 HERV-K104P63124 156 aa8.94□□□□□ -0.98
VPS39-206ENST00000562662 C2orf82Q6UX34 121 aa8.94□□□□□ -0.98
VPS39-206ENST00000562662 SCGB1D4Q6XE38 83 aa8.94□□□□□ -0.98
VPS39-206ENST00000562662 NTN5Q8WTR8 489 aaPredicted RBP8.94□□□□□ -0.98
VPS39-206ENST00000562662 LINC00526Q96FQ7 95 aa8.94□□□□□ -0.98
VPS39-206ENST00000562662 SFTA2Q6UW10 78 aa8.93□□□□□ -0.98
VPS39-206ENST00000562662 HECTD4Q9Y4D8 3996 aa8.92□□□□□ -0.98
VPS39-206ENST00000562662 ZNF561-AS1K7EIQ3 104 aa8.92□□□□□ -0.98
VPS39-206ENST00000562662 PSCAO43653 123 aa8.92□□□□□ -0.98
VPS39-206ENST00000562662 CKS1BP61024 79 aa8.92□□□□□ -0.98
VPS39-206ENST00000562662 CTAG1AP78358 180 aa8.92□□□□□ -0.98
VPS39-206ENST00000562662 WFDC2Q14508 124 aa8.92□□□□□ -0.98
VPS39-206ENST00000562662 C2orf48Q96LS8 159 aa8.92□□□□□ -0.98
VPS39-206ENST00000562662 LITAFQ99732 161 aa8.92□□□□□ -0.98
VPS39-206ENST00000562662 LECT2O14960 151 aa8.91□□□□□ -0.98
VPS39-206ENST00000562662 TIMM17BO60830 172 aa8.91□□□□□ -0.98
VPS39-206ENST00000562662 C10orf25Q5T742 122 aa8.91□□□□□ -0.98
VPS39-206ENST00000562662 SPANXB1Q9NS25 103 aaPredicted RBP8.91□□□□□ -0.98
VPS39-206ENST00000562662 LINC00587B1AMM8 73 aa8.9□□□□□ -0.98
VPS39-206ENST00000562662 UNQ6190/PRO20217Q6UXQ8 127 aa8.9□□□□□ -0.98
VPS39-206ENST00000562662 LRCOL1A6NCL2 159 aa8.89□□□□□ -0.99
VPS39-206ENST00000562662 TMEM238C9JI98 176 aa8.89□□□□□ -0.99
VPS39-206ENST00000562662 F8WDY8 70 aa8.89□□□□□ -0.99
VPS39-206ENST00000562662 SMIM13P0DJ93 91 aa8.89□□□□□ -0.99
VPS39-206ENST00000562662 MEIG1Q5JSS6 88 aa8.89□□□□□ -0.99
VPS39-206ENST00000562662 ADAMTSL4-AS1Q5T5F5 129 aa8.89□□□□□ -0.99
VPS39-206ENST00000562662 CAMK2N2Q96S95 79 aa8.89□□□□□ -0.99
VPS39-206ENST00000562662 HSD52Q0P140 79 aa8.88□□□□□ -0.99
VPS39-206ENST00000562662 C1orf134Q5TEV5 83 aa8.88□□□□□ -0.99
VPS39-206ENST00000562662 Q6ZRU5 148 aa8.88□□□□□ -0.99
VPS39-206ENST00000562662 SPANXDQ9BXN6 97 aa8.88□□□□□ -0.99
VPS39-206ENST00000562662 SPANXCQ9NY87 97 aa8.88□□□□□ -0.99
VPS39-206ENST00000562662 C6orf48Q9UBA6 75 aa8.88□□□□□ -0.99
VPS39-206ENST00000562662 ERG28Q9UKR5 140 aa8.88□□□□□ -0.99
VPS39-206ENST00000562662 DNAH11Q96DT5 4516 aa8.88□□□□□ -0.99
VPS39-206ENST00000562662 TRBV30A0A0K0K1B3 111 aa8.87□□□□□ -0.99
VPS39-206ENST00000562662 A0A0U1RRA0 63 aa8.87□□□□□ -0.99
VPS39-206ENST00000562662 LCE6AA0A183 80 aa8.87□□□□□ -0.99
VPS39-206ENST00000562662 SLPIP03973 132 aa8.87□□□□□ -0.99
VPS39-206ENST00000562662 CIRBPQ14011 172 aaKnown RBP8.87□□□□□ -0.99
VPS39-206ENST00000562662 TAL2Q16559 108 aa8.87□□□□□ -0.99
VPS39-206ENST00000562662 C9orf116Q5BN46 136 aaPredicted RBP8.87□□□□□ -0.99
VPS39-206ENST00000562662 FAT2Q9NYQ8 4349 aa8.87□□□□□ -0.99
VPS39-206ENST00000562662 SYCNQ0VAF6 134 aa8.86□□□□□ -0.99
VPS39-206ENST00000562662 HIST1H4GQ99525 98 aa8.86□□□□□ -0.99
VPS39-206ENST00000562662 PFN2P35080 140 aa8.85□□□□□ -0.99
VPS39-206ENST00000562662 SRSF9Q13242 221 aaKnown RBP eCLIP8.85□□□□□ -0.99
VPS39-206ENST00000562662 COX17Q14061 63 aa8.85□□□□□ -0.99
VPS39-206ENST00000562662 C14orf177Q52M58 125 aa8.85□□□□□ -0.99
VPS39-206ENST00000562662 Q6ZVH6 145 aa8.85□□□□□ -0.99
VPS39-206ENST00000562662 CEND1Q8N111 149 aa8.85□□□□□ -0.99
VPS39-206ENST00000562662 DAND5Q8N907 189 aa8.85□□□□□ -0.99
VPS39-206ENST00000562662 HINT1P49773 126 aaPredicted RBP8.84□□□□□ -0.99
VPS39-206ENST00000562662 LINC00158P58513 81 aa8.84□□□□□ -0.99
VPS39-206ENST00000562662 BVES-AS1Q5T3Y7 98 aa8.84□□□□□ -0.99
VPS39-206ENST00000562662 CARD19Q96LW7 228 aa8.84□□□□□ -0.99
VPS39-206ENST00000562662 A0A087WTM6 91 aa8.83□□□□□ -1
VPS39-206ENST00000562662 GCSHP23434 173 aa8.83□□□□□ -1
VPS39-206ENST00000562662 CNBPP62633 177 aaKnown RBP8.83□□□□□ -1
VPS39-206ENST00000562662 RNF151Q2KHN1 245 aa8.83□□□□□ -1
VPS39-206ENST00000562662 MUSTN1Q8IVN3 82 aa8.83□□□□□ -1
VPS39-206ENST00000562662 MIR7-3HGQ8N6C7 128 aa8.83□□□□□ -1
VPS39-206ENST00000562662 RYR2Q92736 4967 aa8.83□□□□□ -1
VPS39-206ENST00000562662 KMT2CQ8NEZ4 4911 aaKnown RBP8.82□□□□□ -1
VPS39-206ENST00000562662 M0R143 59 aa8.82□□□□□ -1
VPS39-206ENST00000562662 EREGO14944 169 aa8.82□□□□□ -1
VPS39-206ENST00000562662 EIF4EBP3O60516 100 aaPredicted RBP8.82□□□□□ -1
VPS39-206ENST00000562662 IFITM1P13164 125 aa8.82□□□□□ -1
VPS39-206ENST00000562662 PTTG1IPP53801 180 aa8.82□□□□□ -1
VPS39-206ENST00000562662 FXYD2P54710 66 aa8.82□□□□□ -1
VPS39-206ENST00000562662 NPC2P61916 151 aa8.82□□□□□ -1
VPS39-206ENST00000562662 SOSTDC1Q6X4U4 206 aa8.82□□□□□ -1
VPS39-206ENST00000562662 LINC00308Q8TCZ7 52 aa8.82□□□□□ -1
VPS39-206ENST00000562662 SNHG12Q9BXW3 62 aa8.82□□□□□ -1
VPS39-206ENST00000562662 DNAH5Q8TE73 4624 aa8.81□□□□□ -1
VPS39-206ENST00000562662 RTL8CO15255 209 aa8.81□□□□□ -1
VPS39-206ENST00000562662 Q8N814 137 aa8.81□□□□□ -1
VPS39-206ENST00000562662 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.8□□□□□ -1
VPS39-206ENST00000562662 PPDPFQ9H3Y8 114 aa8.8□□□□□ -1
VPS39-206ENST00000562662 PKD1P98161 4303 aa8.79□□□□□ -1
VPS39-206ENST00000562662 TLX1NBP0CAT3 122 aa8.79□□□□□ -1
VPS39-206ENST00000562662 BATFQ16520 125 aa8.79□□□□□ -1
VPS39-206ENST00000562662 LOC107984156A0A0G2JMH3 177 aa8.78□□□□□ -1
VPS39-206ENST00000562662 NDUFC2-KCTD14E9PQ53 114 aa8.78□□□□□ -1
VPS39-206ENST00000562662 TNP2Q05952 138 aa8.78□□□□□ -1
VPS39-206ENST00000562662 ARL17AQ8IVW1 177 aa8.78□□□□□ -1
VPS39-206ENST00000562662 SND1-IT1Q9HBX3 110 aa8.78□□□□□ -1
VPS39-206ENST00000562662 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.77□□□□□ -1.01
VPS39-206ENST00000562662 A4D1N5 150 aa8.77□□□□□ -1.01
VPS39-206ENST00000562662 RPL24P83731 157 aaKnown RBP8.77□□□□□ -1.01
VPS39-206ENST00000562662 Q6ZRP5 223 aa8.77□□□□□ -1.01
VPS39-206ENST00000562662 COPS9Q8WXC6 57 aa8.77□□□□□ -1.01
VPS39-206ENST00000562662 DNAH8Q96JB1 4490 aa8.75□□□□□ -1.01
VPS39-206ENST00000562662 TMEM238LA0A1B0GVL6 79 aa8.75□□□□□ -1.01
VPS39-206ENST00000562662 A6NJY4 79 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms