RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 SAA4P35542 130 aa13.3□□□□□ -0.28
RAB40C-206ENST00000561781 CFHR3Q02985 330 aa13.3□□□□□ -0.28
RAB40C-206ENST00000561781 SIRPDQ9H106 197 aa13.3□□□□□ -0.28
RAB40C-206ENST00000561781 IGHV1OR15-1A0A075B7D0 117 aa13.29□□□□□ -0.28
RAB40C-206ENST00000561781 KRTAP1-1Q07627 177 aa13.29□□□□□ -0.28
RAB40C-206ENST00000561781 LINC00482Q8N8I6 264 aa13.29□□□□□ -0.28
RAB40C-206ENST00000561781 NSD1Q96L73 2696 aaPredicted RBP13.29□□□□□ -0.28
RAB40C-206ENST00000561781 COX6A2Q02221 97 aa13.29□□□□□ -0.28
RAB40C-206ENST00000561781 C19orf54Q5BKX5 351 aa13.29□□□□□ -0.28
RAB40C-206ENST00000561781 Q9UF83 564 aa13.29□□□□□ -0.28
RAB40C-206ENST00000561781 SMIM1B2RUZ4 78 aa13.28□□□□□ -0.28
RAB40C-206ENST00000561781 RMI2Q96E14 147 aa13.28□□□□□ -0.28
RAB40C-206ENST00000561781 SNURFQ9Y675 71 aa13.28□□□□□ -0.28
RAB40C-206ENST00000561781 LINC00467Q9BRT7 94 aa13.27□□□□□ -0.29
RAB40C-206ENST00000561781 SS18Q15532 418 aa13.27□□□□□ -0.29
RAB40C-206ENST00000561781 HIVEP2P31629 2446 aa13.26□□□□□ -0.29
RAB40C-206ENST00000561781 IGKV2-28A0A075B6P5 120 aa13.26□□□□□ -0.29
RAB40C-206ENST00000561781 IGKV2D-28P01615 120 aa13.26□□□□□ -0.29
RAB40C-206ENST00000561781 MSMBP08118 114 aa13.26□□□□□ -0.29
RAB40C-206ENST00000561781 C6orf226Q5I0X4 101 aa13.26□□□□□ -0.29
RAB40C-206ENST00000561781 SND1-IT1Q9HBX3 110 aa13.26□□□□□ -0.29
RAB40C-206ENST00000561781 DGAT2L7PQ6IED9 249 aa13.25□□□□□ -0.29
RAB40C-206ENST00000561781 RPL36AP83881 106 aaKnown RBP13.25□□□□□ -0.29
RAB40C-206ENST00000561781 SPINK13Q1W4C9 94 aa13.25□□□□□ -0.29
RAB40C-206ENST00000561781 LINC00242Q5T6M2 205 aa13.25□□□□□ -0.29
RAB40C-206ENST00000561781 RPL36ALQ969Q0 106 aaKnown RBP13.25□□□□□ -0.29
RAB40C-206ENST00000561781 FN1P02751 2386 aaKnown RBP13.25□□□□□ -0.29
RAB40C-206ENST00000561781 SETD2Q9BYW2 2564 aaPredicted RBP13.24□□□□□ -0.29
RAB40C-206ENST00000561781 B4DSR2 109 aa13.23□□□□□ -0.29
RAB40C-206ENST00000561781 LY6G6DO95868 133 aa13.23□□□□□ -0.29
RAB40C-206ENST00000561781 FAM19A3Q7Z5A8 133 aa13.23□□□□□ -0.29
RAB40C-206ENST00000561781 LINC01356Q8N9X3 169 aa13.23□□□□□ -0.29
RAB40C-206ENST00000561781 IGHV3OR16-12A0A075B7B8 117 aa13.22□□□□□ -0.29
RAB40C-206ENST00000561781 SLPIP03973 132 aa13.22□□□□□ -0.29
RAB40C-206ENST00000561781 PMAIP1Q13794 54 aa13.22□□□□□ -0.29
RAB40C-206ENST00000561781 IGHV3-38A0A0C4DH36 116 aa13.21□□□□□ -0.29
RAB40C-206ENST00000561781 NF1P21359 2839 aa13.2□□□□□ -0.3
RAB40C-206ENST00000561781 Q6ZSN1 163 aa13.2□□□□□ -0.3
RAB40C-206ENST00000561781 MOB4Q9Y3A3 225 aa13.2□□□□□ -0.3
RAB40C-206ENST00000561781 HTN1P15515 57 aa13.19□□□□□ -0.3
RAB40C-206ENST00000561781 IL17DQ8TAD2 202 aa13.19□□□□□ -0.3
RAB40C-206ENST00000561781 JMJD1CQ15652 2540 aa13.19□□□□□ -0.3
RAB40C-206ENST00000561781 LAMTOR3Q9UHA4 124 aa13.19□□□□□ -0.3
RAB40C-206ENST00000561781 USMG5Q96IX5 58 aa13.18□□□□□ -0.3
RAB40C-206ENST00000561781 IGHV4-38-2P0DP08 117 aa13.18□□□□□ -0.3
RAB40C-206ENST00000561781 LINC00167Q96N53 147 aa13.18□□□□□ -0.3
RAB40C-206ENST00000561781 TMEM256-PLSCR3K7ERE1 68 aa13.17□□□□□ -0.3
RAB40C-206ENST00000561781 BRD3OSQ6XYD6 125 aa13.17□□□□□ -0.3
RAB40C-206ENST00000561781 PRR15Q8IV56 129 aa13.17□□□□□ -0.3
RAB40C-206ENST00000561781 C11orf72Q8NBR9 251 aa13.17□□□□□ -0.3
RAB40C-206ENST00000561781 MPLKIPQ8TAP9 179 aa13.17□□□□□ -0.3
RAB40C-206ENST00000561781 IBA57-AS1B1ANH7 110 aa13.17□□□□□ -0.3
RAB40C-206ENST00000561781 INAFM1C9JVW0 142 aa13.17□□□□□ -0.3
RAB40C-206ENST00000561781 MIFP14174 115 aa13.16□□□□□ -0.3
RAB40C-206ENST00000561781 TRAV10A0A0B4J240 114 aa13.15□□□□□ -0.3
RAB40C-206ENST00000561781 C1orf158Q8N1D5 194 aa13.15□□□□□ -0.3
RAB40C-206ENST00000561781 SNRPD3P62318 126 aaKnown RBP13.15□□□□□ -0.3
RAB40C-206ENST00000561781 PLAC8L1A1L4L8 177 aa13.14□□□□□ -0.31
RAB40C-206ENST00000561781 PRM2P04554 102 aa13.13□□□□□ -0.31
RAB40C-206ENST00000561781 TRBV7-4A0A0J9YYF1 115 aa13.12□□□□□ -0.31
RAB40C-206ENST00000561781 Q6ZRU5 148 aa13.12□□□□□ -0.31
RAB40C-206ENST00000561781 LINC01547P58512 204 aaPredicted RBP13.12□□□□□ -0.31
RAB40C-206ENST00000561781 FAM229BQ4G0N7 80 aa13.12□□□□□ -0.31
RAB40C-206ENST00000561781 CCL18P55774 89 aa13.11□□□□□ -0.31
RAB40C-206ENST00000561781 K7EMT4 169 aa13.1□□□□□ -0.31
RAB40C-206ENST00000561781 H3BUA1 57 aa13.1□□□□□ -0.31
RAB40C-206ENST00000561781 LINC00158P58513 81 aa13.1□□□□□ -0.31
RAB40C-206ENST00000561781 ESRGQ1W209 222 aa13.1□□□□□ -0.31
RAB40C-206ENST00000561781 CXCL6P80162 114 aa13.08□□□□□ -0.32
RAB40C-206ENST00000561781 K7EQG2 157 aa13.08□□□□□ -0.32
RAB40C-206ENST00000561781 Q6ZTI0 123 aa13.08□□□□□ -0.32
RAB40C-206ENST00000561781 Q8N814 137 aa13.08□□□□□ -0.32
RAB40C-206ENST00000561781 SORL1Q92673 2214 aa13.08□□□□□ -0.32
RAB40C-206ENST00000561781 COX7B2Q8TF08 81 aa13.07□□□□□ -0.32
RAB40C-206ENST00000561781 PAX4O43316 350 aa13.07□□□□□ -0.32
RAB40C-206ENST00000561781 ERC2-IT1O76042 136 aa13.07□□□□□ -0.32
RAB40C-206ENST00000561781 IGHV3-53P01767 116 aa13.07□□□□□ -0.32
RAB40C-206ENST00000561781 HAMPP81172 84 aa13.07□□□□□ -0.32
RAB40C-206ENST00000561781 LY6EQ16553 131 aa13.07□□□□□ -0.32
RAB40C-206ENST00000561781 TM2D3Q9BRN9 247 aa13.06□□□□□ -0.32
RAB40C-206ENST00000561781 TRBV6-4A0A1B0GX49 114 aa13.05□□□□□ -0.32
RAB40C-206ENST00000561781 CD164Q04900 197 aa13.05□□□□□ -0.32
RAB40C-206ENST00000561781 TMEM254Q8TBM7 123 aa13.05□□□□□ -0.32
RAB40C-206ENST00000561781 Q6ZQT0 140 aa13.04□□□□□ -0.32
RAB40C-206ENST00000561781 Q8N3U1 123 aa13.04□□□□□ -0.32
RAB40C-206ENST00000561781 DYNLRB2Q8TF09 96 aa13.04□□□□□ -0.32
RAB40C-206ENST00000561781 FSHBP01225 129 aa13.03□□□□□ -0.32
RAB40C-206ENST00000561781 Q6ZVQ6 151 aa13.03□□□□□ -0.32
RAB40C-206ENST00000561781 LOC110117498A0A087WWA1 95 aa13.03□□□□□ -0.32
RAB40C-206ENST00000561781 IGLV1-40P01703 118 aa13.03□□□□□ -0.32
RAB40C-206ENST00000561781 ATRQ13535 2644 aa13.03□□□□□ -0.32
RAB40C-206ENST00000561781 A0A1W2PRX2 142 aa13.02□□□□□ -0.32
RAB40C-206ENST00000561781 DEFB112Q30KQ8 113 aa13.02□□□□□ -0.33
RAB40C-206ENST00000561781 C11orf68Q9H3H3 251 aaKnown RBP13.02□□□□□ -0.33
RAB40C-206ENST00000561781 NREPQ16612 68 aa13.01□□□□□ -0.33
RAB40C-206ENST00000561781 CDC42SE2Q9NRR3 84 aa13.01□□□□□ -0.33
RAB40C-206ENST00000561781 K7EQD1 137 aa13□□□□□ -0.33
RAB40C-206ENST00000561781 FBN1P35555 2871 aaKnown RBP13□□□□□ -0.33
RAB40C-206ENST00000561781 TOMM7Q9P0U1 55 aa12.99□□□□□ -0.33
RAB40C-206ENST00000561781 FUSP35637 526 aaKnown RBP eCLIP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms