RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SS18Q15532 418 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 ENHOQ6UWT2 76 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 PHF5AQ7RTV0 110 aaKnown RBP1.63□□□□□ -2.15
VPS13C-208ENST00000559119 C14orf132Q9NPU4 83 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 U3KQA8 63 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 SRCAPQ6ZRS2 3230 aa1.63□□□□□ -2.15
VPS13C-208ENST00000559119 KNTC1P50748 2209 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 PRRC2BQ5JSZ5 2229 aaKnown RBP1.62□□□□□ -2.15
VPS13C-208ENST00000559119 A0A0C4DFX4 3053 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 IGHV3-64A0A075B6Q5 118 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 hDV103S1A0JD37 113 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 GNRH2O43555 120 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 CRPP02741 224 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 DAD1P61803 113 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 UBE2BP63146 152 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 SOSTDC1Q6X4U4 206 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 KTN1-AS1Q86SY8 53 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 MIR7-3HGQ8N6C7 128 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 TMEM254Q8TBM7 123 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 CHCHD7Q9BUK0 85 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 BPESC1Q9GZL8 116 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 RBM12B-AS1Q9P1G2 102 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 LINC00588Q9Y4M8 146 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 S4R3C0 116 aa1.62□□□□□ -2.15
VPS13C-208ENST00000559119 DSCAMO60469 2012 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 TNCP24821 2201 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 DIDO1Q9BTC0 2240 aaKnown RBP1.61□□□□□ -2.15
VPS13C-208ENST00000559119 IGHV3-72A0A0B4J1Y9 119 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 TRAV10A0A0B4J240 114 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 LCE6AA0A183 80 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 A0A1B0GVX0 72 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 IGKV2-29A2NJV5 120 aaPredicted RBP1.61□□□□□ -2.15
VPS13C-208ENST00000559119 M0R378 163 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 NCR3O14931 201 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 LY6HO94772 140 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 FUSP35637 526 aaKnown RBP eCLIP1.61□□□□□ -2.15
VPS13C-208ENST00000559119 FAM229BQ4G0N7 80 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 UNQ9165/PRO28630Q6UXU0 137 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 ATP11AUNQ6ZP68 121 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 Q6ZQT0 140 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 LINC00337Q8N6G1 96 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 Q8N6K4 173 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 DEFB108BQ8NET1 73 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 SMIM11BQ8TCY0 68 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 CCL17Q92583 94 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 UBE2E2Q96LR5 201 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 CYP4F30PQ9H0H9 118 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 C11orf68Q9H3H3 251 aaKnown RBP1.61□□□□□ -2.15
VPS13C-208ENST00000559119 CDKN2A-AS1Q9UH64 79 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 SNURFQ9Y675 71 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 SEC16AO15027 2179 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 CACNA1DQ01668 2161 aa1.61□□□□□ -2.15
VPS13C-208ENST00000559119 DSCAML1Q8TD84 2053 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 CEP290O15078 2479 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 MED12Q93074 2177 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 IGHV3-49A0A0A0MS15 119 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 TRBV6-4A0A1B0GX49 114 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 ODF3BA8MYP8 253 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 NDUFA4O00483 81 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 UBE2L6O14933 153 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 LECT2O14960 151 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 APELAP0DMC3 54 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 PRB4P10163 310 aaPredicted RBP1.6□□□□□ -2.15
VPS13C-208ENST00000559119 CCL4P13236 92 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 SYCNQ0VAF6 134 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 NREPQ16612 68 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 DEFB114Q30KQ6 69 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 C6orf99Q4VX62 202 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 MINOS1Q5TGZ0 78 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 Q8N814 137 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 WFDC9Q8NEX5 89 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 SND1-IT1Q9HBX3 110 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 PCNTO95613 3336 aa1.6□□□□□ -2.15
VPS13C-208ENST00000559119 TRBV6-8A0A0A6YYG3 113 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 TRAV22A0A0B4J277 110 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 A0A1B0GW54 56 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 H3BUA1 57 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 CCL5P13501 91 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 CCL18P55774 89 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 ELOF1P60002 83 aaKnown RBP1.59□□□□□ -2.15
VPS13C-208ENST00000559119 CLEC19AQ6UXS0 136 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 Q6ZS52 159 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 NTM-AS1Q6ZSK4 140 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 CNEP1R1Q8N9A8 125 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 LINC00467Q9BRT7 94 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 MINOS1-NBL1R4GNA1 71 aa1.59□□□□□ -2.15
VPS13C-208ENST00000559119 INTS1Q8N201 2190 aaKnown RBP1.59□□□□□ -2.16
VPS13C-208ENST00000559119 BRWD1Q9NSI6 2320 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 PRR14LQ5THK1 2151 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 MYO7AQ13402 2215 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 TRBV10-1A0A0K0K1A3 114 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 A6NN06 94 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 A8MTW9 85 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 PSCAO43653 123 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 ZNF73O43830 326 aaPredicted RBP1.58□□□□□ -2.16
VPS13C-208ENST00000559119 IGHV3-53P01767 116 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 HAMPP81172 84 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 COX6A2Q02221 97 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 ASB16-AS1Q495Z4 193 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 FAM74A4Q5TZK3 123 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms