RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 XCL1P47992 114 aa7.76□□□□□ -1.17
USP3-206ENST00000558157 C4orf3Q8WVX3 66 aa7.76□□□□□ -1.17
USP3-206ENST00000558157 XCL2Q9UBD3 114 aa7.76□□□□□ -1.17
USP3-206ENST00000558157 IGHV3OR16-12A0A075B7B8 117 aa7.75□□□□□ -1.17
USP3-206ENST00000558157 A0A087WYN8 130 aa7.75□□□□□ -1.17
USP3-206ENST00000558157 SMIM26A0A096LP01 95 aa7.75□□□□□ -1.17
USP3-206ENST00000558157 JMJD7-PLA2G4BH0Y9G9 81 aa7.75□□□□□ -1.17
USP3-206ENST00000558157 COX6A2Q02221 97 aa7.75□□□□□ -1.17
USP3-206ENST00000558157 LINC00336Q6ZUF6 198 aa7.75□□□□□ -1.17
USP3-206ENST00000558157 A0A0U1RRA0 63 aa7.74□□□□□ -1.17
USP3-206ENST00000558157 HOXD3P31249 432 aaPredicted RBP7.74□□□□□ -1.17
USP3-206ENST00000558157 PROK1P58294 105 aa7.74□□□□□ -1.17
USP3-206ENST00000558157 A0A1W2PRX2 142 aa7.74□□□□□ -1.17
USP3-206ENST00000558157 EDN2P20800 178 aa7.74□□□□□ -1.17
USP3-206ENST00000558157 C9orf129Q5T035 196 aaKnown RBP7.74□□□□□ -1.17
USP3-206ENST00000558157 LINC00337Q8N6G1 96 aa7.74□□□□□ -1.17
USP3-206ENST00000558157 SMIM11BQ8TCY0 68 aa7.74□□□□□ -1.17
USP3-206ENST00000558157 TRAV7A0A075B6U4 112 aa7.73□□□□□ -1.17
USP3-206ENST00000558157 ORMDL1Q9P0S3 153 aa7.73□□□□□ -1.17
USP3-206ENST00000558157 SETD2Q9BYW2 2564 aaPredicted RBP7.73□□□□□ -1.17
USP3-206ENST00000558157 C2CD3Q4AC94 2353 aa7.73□□□□□ -1.17
USP3-206ENST00000558157 KNCNA6PVL3 124 aa7.73□□□□□ -1.17
USP3-206ENST00000558157 H7BZZ5 65 aa7.73□□□□□ -1.17
USP3-206ENST00000558157 IGHV3-53P01767 116 aa7.73□□□□□ -1.17
USP3-206ENST00000558157 SLURP1P55000 103 aa7.73□□□□□ -1.17
USP3-206ENST00000558157 KLKP1Q107X0 134 aa7.73□□□□□ -1.17
USP3-206ENST00000558157 SPINK13Q1W4C9 94 aa7.73□□□□□ -1.17
USP3-206ENST00000558157 C20orf197Q8N268 126 aa7.73□□□□□ -1.17
USP3-206ENST00000558157 SND1-IT1Q9HBX3 110 aa7.73□□□□□ -1.17
USP3-206ENST00000558157 TEP1Q99973 2627 aaKnown RBP7.73□□□□□ -1.17
USP3-206ENST00000558157 IGKV2-28A0A075B6P5 120 aa7.72□□□□□ -1.17
USP3-206ENST00000558157 IGKV2D-28P01615 120 aa7.72□□□□□ -1.17
USP3-206ENST00000558157 C1orf43Q9BWL3 253 aa7.72□□□□□ -1.17
USP3-206ENST00000558157 ATP5EP56381 51 aaPredicted RBP7.72□□□□□ -1.17
USP3-206ENST00000558157 KRTAP10-3P60369 221 aa7.72□□□□□ -1.17
USP3-206ENST00000558157 MAST4O15021 2626 aa7.71□□□□□ -1.17
USP3-206ENST00000558157 K7EQG2 157 aa7.71□□□□□ -1.17
USP3-206ENST00000558157 NCR3O14931 201 aa7.71□□□□□ -1.17
USP3-206ENST00000558157 NIPBLQ6KC79 2804 aaeCLIP7.71□□□□□ -1.17
USP3-206ENST00000558157 TRAV23DV6A0A075B6W5 121 aa7.71□□□□□ -1.18
USP3-206ENST00000558157 IGHV3-73A0A0B4J1V6 119 aa7.71□□□□□ -1.18
USP3-206ENST00000558157 LECT2O14960 151 aa7.71□□□□□ -1.18
USP3-206ENST00000558157 LINC00167Q96N53 147 aa7.71□□□□□ -1.18
USP3-206ENST00000558157 NDUFC1O43677 76 aa7.7□□□□□ -1.18
USP3-206ENST00000558157 UBL5Q9BZL1 73 aa7.7□□□□□ -1.18
USP3-206ENST00000558157 MIR7-3HGQ8N6C7 128 aa7.7□□□□□ -1.18
USP3-206ENST00000558157 IGKV3-20P01619 116 aa7.69□□□□□ -1.18
USP3-206ENST00000558157 SS18Q15532 418 aa7.69□□□□□ -1.18
USP3-206ENST00000558157 CCL24O00175 119 aa7.68□□□□□ -1.18
USP3-206ENST00000558157 Q6ZSN1 163 aa7.68□□□□□ -1.18
USP3-206ENST00000558157 JMJD1CQ15652 2540 aa7.68□□□□□ -1.18
USP3-206ENST00000558157 TMEM256-PLSCR3K7ERE1 68 aa7.68□□□□□ -1.18
USP3-206ENST00000558157 RPL36AP83881 106 aaKnown RBP7.68□□□□□ -1.18
USP3-206ENST00000558157 ENHOQ6UWT2 76 aa7.68□□□□□ -1.18
USP3-206ENST00000558157 RPL36ALQ969Q0 106 aaKnown RBP7.68□□□□□ -1.18
USP3-206ENST00000558157 RPL35AP18077 110 aaKnown RBP7.67□□□□□ -1.18
USP3-206ENST00000558157 A8MTW9 85 aa7.67□□□□□ -1.18
USP3-206ENST00000558157 IBA57-AS1B1ANH7 110 aa7.67□□□□□ -1.18
USP3-206ENST00000558157 FAM19A1Q7Z5A9 133 aa7.67□□□□□ -1.18
USP3-206ENST00000558157 IGHV3-38A0A0C4DH36 116 aa7.66□□□□□ -1.18
USP3-206ENST00000558157 COX7B2Q8TF08 81 aa7.66□□□□□ -1.18
USP3-206ENST00000558157 Q9UF83 564 aa7.66□□□□□ -1.18
USP3-206ENST00000558157 FP248Q71RG6 208 aaPredicted RBP7.66□□□□□ -1.18
USP3-206ENST00000558157 CDC42SE2Q9NRR3 84 aa7.66□□□□□ -1.18
USP3-206ENST00000558157 CCL18P55774 89 aa7.65□□□□□ -1.18
USP3-206ENST00000558157 KRTAP24-1Q3LI83 254 aa7.65□□□□□ -1.18
USP3-206ENST00000558157 TENM1Q9UKZ4 2725 aa7.64□□□□□ -1.19
USP3-206ENST00000558157 TRBV6-4A0A1B0GX49 114 aa7.64□□□□□ -1.19
USP3-206ENST00000558157 V9GYY9 64 aa7.64□□□□□ -1.19
USP3-206ENST00000558157 TRBV10-1A0A0K0K1A3 114 aa7.63□□□□□ -1.19
USP3-206ENST00000558157 LINC00158P58513 81 aa7.63□□□□□ -1.19
USP3-206ENST00000558157 LINC00482Q8N8I6 264 aa7.63□□□□□ -1.19
USP3-206ENST00000558157 DYNLRB2Q8TF09 96 aa7.63□□□□□ -1.19
USP3-206ENST00000558157 WNK1Q9H4A3 2382 aa7.62□□□□□ -1.19
USP3-206ENST00000558157 K7EQD1 137 aa7.62□□□□□ -1.19
USP3-206ENST00000558157 WFDC9Q8NEX5 89 aa7.62□□□□□ -1.19
USP3-206ENST00000558157 PKIGQ9Y2B9 76 aa7.62□□□□□ -1.19
USP3-206ENST00000558157 SLPIP03973 132 aa7.62□□□□□ -1.19
USP3-206ENST00000558157 HTN1P15515 57 aa7.61□□□□□ -1.19
USP3-206ENST00000558157 Q8N814 137 aa7.61□□□□□ -1.19
USP3-206ENST00000558157 ATRQ13535 2644 aa7.61□□□□□ -1.19
USP3-206ENST00000558157 TRBV7-6A0A0J9YX20 115 aa7.61□□□□□ -1.19
USP3-206ENST00000558157 SEC61GP60059 68 aa7.61□□□□□ -1.19
USP3-206ENST00000558157 C1orf195Q5TG92 126 aa7.61□□□□□ -1.19
USP3-206ENST00000558157 C11orf72Q8NBR9 251 aa7.61□□□□□ -1.19
USP3-206ENST00000558157 F8WEM9 126 aa7.6□□□□□ -1.19
USP3-206ENST00000558157 PAX4O43316 350 aa7.6□□□□□ -1.19
USP3-206ENST00000558157 CXCL6P80162 114 aa7.6□□□□□ -1.19
USP3-206ENST00000558157 DEFB114Q30KQ6 69 aa7.6□□□□□ -1.19
USP3-206ENST00000558157 LOC110117498A0A087WWA1 95 aa7.6□□□□□ -1.19
USP3-206ENST00000558157 RBM3P98179 157 aaKnown RBP7.59□□□□□ -1.19
USP3-206ENST00000558157 FBN1P35555 2871 aaKnown RBP7.59□□□□□ -1.19
USP3-206ENST00000558157 ERC2-IT1O76042 136 aa7.58□□□□□ -1.2
USP3-206ENST00000558157 PDE6GP18545 87 aa7.58□□□□□ -1.2
USP3-206ENST00000558157 UBE2L6O14933 153 aa7.58□□□□□ -1.2
USP3-206ENST00000558157 LINC01547P58512 204 aaPredicted RBP7.58□□□□□ -1.2
USP3-206ENST00000558157 NTM-AS1Q6ZSK4 140 aa7.58□□□□□ -1.2
USP3-206ENST00000558157 SPATA3Q8NHX4 192 aa7.58□□□□□ -1.2
USP3-206ENST00000558157 H3BQ85 93 aa7.57□□□□□ -1.2
USP3-206ENST00000558157 Q6ZQT0 140 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms