RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 CKS1BP61024 79 aa6.62□□□□□ -1.35
SYNE2-215ENST00000554997 HERVK_113P61574 105 aa6.62□□□□□ -1.35
SYNE2-215ENST00000554997 LCE2CQ5TA81 110 aa6.62□□□□□ -1.35
SYNE2-215ENST00000554997 STPG4Q8N801 248 aa6.62□□□□□ -1.35
SYNE2-215ENST00000554997 C9orf163Q8N9P6 203 aa6.62□□□□□ -1.35
SYNE2-215ENST00000554997 NDUFA1O15239 70 aa6.61□□□□□ -1.35
SYNE2-215ENST00000554997 LEPROTO15243 131 aa6.61□□□□□ -1.35
SYNE2-215ENST00000554997 CXCL5P42830 114 aa6.61□□□□□ -1.35
SYNE2-215ENST00000554997 JOSD1Q15040 202 aaPredicted RBP6.61□□□□□ -1.35
SYNE2-215ENST00000554997 RNF151Q2KHN1 245 aa6.61□□□□□ -1.35
SYNE2-215ENST00000554997 UNQ6190/PRO20217Q6UXQ8 127 aa6.61□□□□□ -1.35
SYNE2-215ENST00000554997 E9PLD3 99 aa6.6□□□□□ -1.35
SYNE2-215ENST00000554997 C10orf25Q5T742 122 aa6.6□□□□□ -1.35
SYNE2-215ENST00000554997 C2orf82Q6UX34 121 aa6.6□□□□□ -1.35
SYNE2-215ENST00000554997 Q6ZRU5 148 aa6.6□□□□□ -1.35
SYNE2-215ENST00000554997 ATOH7Q8N100 152 aa6.6□□□□□ -1.35
SYNE2-215ENST00000554997 PLEKHB2Q96CS7 222 aa6.6□□□□□ -1.35
SYNE2-215ENST00000554997 DYNC1H1Q14204 4646 aaKnown RBP6.6□□□□□ -1.35
SYNE2-215ENST00000554997 TRBV30A0A0K0K1B3 111 aa6.59□□□□□ -1.35
SYNE2-215ENST00000554997 GCSHP23434 173 aa6.59□□□□□ -1.35
SYNE2-215ENST00000554997 FUSP35637 526 aaKnown RBP eCLIP6.59□□□□□ -1.35
SYNE2-215ENST00000554997 SFTA2Q6UW10 78 aa6.59□□□□□ -1.35
SYNE2-215ENST00000554997 SDIM1Q6ZPB5 146 aa6.59□□□□□ -1.35
SYNE2-215ENST00000554997 CARD19Q96LW7 228 aa6.59□□□□□ -1.35
SYNE2-215ENST00000554997 J3QQQ9 107 aa6.58□□□□□ -1.36
SYNE2-215ENST00000554997 ZNF625Q96I27 306 aaPredicted RBP6.58□□□□□ -1.36
SYNE2-215ENST00000554997 C6orf48Q9UBA6 75 aa6.58□□□□□ -1.36
SYNE2-215ENST00000554997 HECTD4Q9Y4D8 3996 aa6.58□□□□□ -1.36
SYNE2-215ENST00000554997 DNAH11Q96DT5 4516 aa6.57□□□□□ -1.36
SYNE2-215ENST00000554997 PKD1P98161 4303 aa6.57□□□□□ -1.36
SYNE2-215ENST00000554997 NMUP48645 174 aa6.57□□□□□ -1.36
SYNE2-215ENST00000554997 IGKV2D-26A0A0A0MRZ7 120 aa6.56□□□□□ -1.36
SYNE2-215ENST00000554997 MYMXA0A1B0GTQ4 84 aa6.56□□□□□ -1.36
SYNE2-215ENST00000554997 HSBP1L1C9JCN9 74 aa6.56□□□□□ -1.36
SYNE2-215ENST00000554997 LGALS3P17931 250 aaKnown RBP6.56□□□□□ -1.36
SYNE2-215ENST00000554997 TSPEAR-AS2P59090 65 aa6.56□□□□□ -1.36
SYNE2-215ENST00000554997 HERV-K104P63124 156 aa6.56□□□□□ -1.36
SYNE2-215ENST00000554997 MAJINQ3KP22 176 aa6.56□□□□□ -1.36
SYNE2-215ENST00000554997 LINC01620Q4KN68 170 aa6.56□□□□□ -1.36
SYNE2-215ENST00000554997 ANKRD39Q53RE8 183 aa6.56□□□□□ -1.36
SYNE2-215ENST00000554997 NDUFA12Q9UI09 145 aa6.56□□□□□ -1.36
SYNE2-215ENST00000554997 PKIGQ9Y2B9 76 aa6.56□□□□□ -1.36
SYNE2-215ENST00000554997 LOC107984640A0A0U1RRK4 108 aa6.55□□□□□ -1.36
SYNE2-215ENST00000554997 C16orf90A8MZG2 172 aa6.55□□□□□ -1.36
SYNE2-215ENST00000554997 LINC00587B1AMM8 73 aa6.55□□□□□ -1.36
SYNE2-215ENST00000554997 TLX1NBP0CAT3 122 aa6.55□□□□□ -1.36
SYNE2-215ENST00000554997 COX17Q14061 63 aa6.55□□□□□ -1.36
SYNE2-215ENST00000554997 C9orf116Q5BN46 136 aaPredicted RBP6.55□□□□□ -1.36
SYNE2-215ENST00000554997 PYY3Q5JQD4 70 aa6.55□□□□□ -1.36
SYNE2-215ENST00000554997 PKHD1P08F94 4074 aa6.54□□□□□ -1.36
SYNE2-215ENST00000554997 LOC105371267A0A1B0GV96 52 aa6.54□□□□□ -1.36
SYNE2-215ENST00000554997 KRTAP10-1P60331 282 aa6.54□□□□□ -1.36
SYNE2-215ENST00000554997 NDUFC2-KCTD14E9PQ53 114 aa6.53□□□□□ -1.36
SYNE2-215ENST00000554997 Q6ZRP5 223 aa6.53□□□□□ -1.36
SYNE2-215ENST00000554997 ERG28Q9UKR5 140 aa6.53□□□□□ -1.36
SYNE2-215ENST00000554997 PFN2P35080 140 aa6.52□□□□□ -1.37
SYNE2-215ENST00000554997 LINC00474Q9P2X8 69 aa6.52□□□□□ -1.37
SYNE2-215ENST00000554997 KIAA1109Q2LD37 5005 aa6.52□□□□□ -1.37
SYNE2-215ENST00000554997 A0A096LNI7 61 aa6.51□□□□□ -1.37
SYNE2-215ENST00000554997 A0A0J9YXY3 114 aa6.51□□□□□ -1.37
SYNE2-215ENST00000554997 ZNF815PA8K554 130 aa6.51□□□□□ -1.37
SYNE2-215ENST00000554997 PTTG1IPP53801 180 aa6.51□□□□□ -1.37
SYNE2-215ENST00000554997 GAGE2BQ13066 116 aa6.51□□□□□ -1.37
SYNE2-215ENST00000554997 CIRBPQ14011 172 aaKnown RBP6.51□□□□□ -1.37
SYNE2-215ENST00000554997 Q6ZSA8 131 aa6.51□□□□□ -1.37
SYNE2-215ENST00000554997 PCP2Q8IVA1 136 aa6.51□□□□□ -1.37
SYNE2-215ENST00000554997 DPH3Q96FX2 82 aa6.51□□□□□ -1.37
SYNE2-215ENST00000554997 VAMP8Q9BV40 100 aa6.51□□□□□ -1.37
SYNE2-215ENST00000554997 TTTY13Q9BZ97 58 aa6.51□□□□□ -1.37
SYNE2-215ENST00000554997 SMIM13P0DJ93 91 aa6.5□□□□□ -1.37
SYNE2-215ENST00000554997 LINC00158P58513 81 aa6.5□□□□□ -1.37
SYNE2-215ENST00000554997 RPL18AQ02543 176 aaKnown RBP6.5□□□□□ -1.37
SYNE2-215ENST00000554997 GAGE2EQ4V326 116 aa6.5□□□□□ -1.37
SYNE2-215ENST00000554997 MEIG1Q5JSS6 88 aa6.5□□□□□ -1.37
SYNE2-215ENST00000554997 FAM30AQ9NZY2 134 aa6.5□□□□□ -1.37
SYNE2-215ENST00000554997 GAGE2DQ9UEU5 116 aa6.5□□□□□ -1.37
SYNE2-215ENST00000554997 HERC2O95714 4834 aa6.5□□□□□ -1.37
SYNE2-215ENST00000554997 IGKV2-24A0A0C4DH68 120 aa6.49□□□□□ -1.37
SYNE2-215ENST00000554997 PANO1I0J062 215 aa6.49□□□□□ -1.37
SYNE2-215ENST00000554997 TIMM17BO60830 172 aa6.49□□□□□ -1.37
SYNE2-215ENST00000554997 SPATA45Q537H7 98 aa6.49□□□□□ -1.37
SYNE2-215ENST00000554997 BOD1L2Q8IYS8 172 aa6.49□□□□□ -1.37
SYNE2-215ENST00000554997 SPACA4Q8TDM5 124 aa6.49□□□□□ -1.37
SYNE2-215ENST00000554997 PAM16Q9Y3D7 125 aa6.49□□□□□ -1.37
SYNE2-215ENST00000554997 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.49□□□□□ -1.37
SYNE2-215ENST00000554997 DNAH5Q8TE73 4624 aa6.48□□□□□ -1.37
SYNE2-215ENST00000554997 A0A0U1RRA0 63 aa6.48□□□□□ -1.37
SYNE2-215ENST00000554997 DLEU1O43261 78 aa6.48□□□□□ -1.37
SYNE2-215ENST00000554997 CHTF8P0CG12 524 aa6.48□□□□□ -1.37
SYNE2-215ENST00000554997 COX8AP10176 69 aa6.48□□□□□ -1.37
SYNE2-215ENST00000554997 S100A12P80511 92 aa6.48□□□□□ -1.37
SYNE2-215ENST00000554997 EPM2AB3EWF7 344 aa6.47□□□□□ -1.37
SYNE2-215ENST00000554997 C9orf129Q5T035 196 aaKnown RBP6.47□□□□□ -1.37
SYNE2-215ENST00000554997 ADAMTSL4-AS1Q5T5F5 129 aa6.47□□□□□ -1.37
SYNE2-215ENST00000554997 SCGB1D4Q6XE38 83 aa6.47□□□□□ -1.37
SYNE2-215ENST00000554997 MIR7-3HGQ8N6C7 128 aa6.47□□□□□ -1.37
SYNE2-215ENST00000554997 C14orf144Q96I85 54 aa6.47□□□□□ -1.37
SYNE2-215ENST00000554997 SND1-IT1Q9HBX3 110 aa6.47□□□□□ -1.37
SYNE2-215ENST00000554997 LRP1BQ9NZR2 4599 aa6.47□□□□□ -1.37
SYNE2-215ENST00000554997 A0A087WYN8 130 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms