RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 OPRPNQ99935 248 aaPredicted RBP8.5□□□□□ -1.05
SHMT2-211ENST00000554310 FAT1Q14517 4588 aa8.49□□□□□ -1.05
SHMT2-211ENST00000554310 MYMXA0A1B0GTQ4 84 aa8.49□□□□□ -1.05
SHMT2-211ENST00000554310 MRPS36P82909 103 aaKnown RBP8.49□□□□□ -1.05
SHMT2-211ENST00000554310 TAL2Q16559 108 aa8.49□□□□□ -1.05
SHMT2-211ENST00000554310 OR5A1Q8NGJ0 315 aa8.49□□□□□ -1.05
SHMT2-211ENST00000554310 ORAOV1Q8WV07 137 aa8.49□□□□□ -1.05
SHMT2-211ENST00000554310 CHAC1Q9BUX1 264 aa8.49□□□□□ -1.05
SHMT2-211ENST00000554310 TTTY13Q9BZ97 58 aa8.49□□□□□ -1.05
SHMT2-211ENST00000554310 IGKV3OR2-268A0A0C4DH90 116 aa8.48□□□□□ -1.05
SHMT2-211ENST00000554310 SMR3BP02814 79 aaPredicted RBP8.48□□□□□ -1.05
SHMT2-211ENST00000554310 SMAGPQ0VAQ4 97 aa8.48□□□□□ -1.05
SHMT2-211ENST00000554310 SRRM2Q9UQ35 2752 aaKnown RBP8.47□□□□□ -1.05
SHMT2-211ENST00000554310 GAGE12HA6NDE8 117 aa8.47□□□□□ -1.05
SHMT2-211ENST00000554310 FAM229AH3BQW9 127 aa8.47□□□□□ -1.05
SHMT2-211ENST00000554310 TMEM170BQ5T4T1 132 aa8.47□□□□□ -1.05
SHMT2-211ENST00000554310 CHCHD10Q8WYQ3 142 aaPredicted RBP8.47□□□□□ -1.05
SHMT2-211ENST00000554310 CSDC2Q9Y534 153 aaKnown RBP8.47□□□□□ -1.05
SHMT2-211ENST00000554310 VPS13BQ7Z7G8 4022 aa8.46□□□□□ -1.05
SHMT2-211ENST00000554310 TMEM223A0PJW6 202 aa8.46□□□□□ -1.06
SHMT2-211ENST00000554310 A6NDN8 102 aa8.46□□□□□ -1.06
SHMT2-211ENST00000554310 ZNF22P17026 224 aaPredicted RBP8.46□□□□□ -1.06
SHMT2-211ENST00000554310 CNBPP62633 177 aaKnown RBP8.46□□□□□ -1.06
SHMT2-211ENST00000554310 CFAP161Q6P656 301 aa8.46□□□□□ -1.06
SHMT2-211ENST00000554310 SCXQ7RTU7 201 aa8.46□□□□□ -1.06
SHMT2-211ENST00000554310 C9orf163Q8N9P6 203 aa8.46□□□□□ -1.06
SHMT2-211ENST00000554310 A0A0J9YXV3 536 aa8.45□□□□□ -1.06
SHMT2-211ENST00000554310 TINCRA0A1B0GVN0 87 aa8.45□□□□□ -1.06
SHMT2-211ENST00000554310 TAX1BP3O14907 124 aa8.45□□□□□ -1.06
SHMT2-211ENST00000554310 LEPROTO15243 131 aa8.45□□□□□ -1.06
SHMT2-211ENST00000554310 Q6ZUT4 128 aa8.45□□□□□ -1.06
SHMT2-211ENST00000554310 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.44□□□□□ -1.06
SHMT2-211ENST00000554310 ZNF815PA8K554 130 aa8.44□□□□□ -1.06
SHMT2-211ENST00000554310 CEND1Q8N111 149 aa8.44□□□□□ -1.06
SHMT2-211ENST00000554310 C15orf56Q8N910 161 aa8.44□□□□□ -1.06
SHMT2-211ENST00000554310 PLEKHB2Q96CS7 222 aa8.44□□□□□ -1.06
SHMT2-211ENST00000554310 CDC42SE2Q9NRR3 84 aa8.44□□□□□ -1.06
SHMT2-211ENST00000554310 DMBT1Q9UGM3 2413 aaPredicted RBP8.44□□□□□ -1.06
SHMT2-211ENST00000554310 LINC00959A0A1B0GUT2 108 aa8.43□□□□□ -1.06
SHMT2-211ENST00000554310 H3BRM9 83 aa8.43□□□□□ -1.06
SHMT2-211ENST00000554310 INAFM2P0DMQ5 153 aa8.43□□□□□ -1.06
SHMT2-211ENST00000554310 UBE2D1P51668 147 aa8.43□□□□□ -1.06
SHMT2-211ENST00000554310 FOXI1Q12951 378 aa8.43□□□□□ -1.06
SHMT2-211ENST00000554310 FAM19A3Q7Z5A8 133 aa8.43□□□□□ -1.06
SHMT2-211ENST00000554310 LINC00528Q8N1L1 170 aa8.43□□□□□ -1.06
SHMT2-211ENST00000554310 GVQW2A0A096LPI5 108 aaPredicted RBP8.42□□□□□ -1.06
SHMT2-211ENST00000554310 J3QQQ9 107 aa8.42□□□□□ -1.06
SHMT2-211ENST00000554310 CCL25O15444 150 aa8.42□□□□□ -1.06
SHMT2-211ENST00000554310 LGALS3P17931 250 aaKnown RBP8.42□□□□□ -1.06
SHMT2-211ENST00000554310 XCL1P47992 114 aa8.42□□□□□ -1.06
SHMT2-211ENST00000554310 SS18Q15532 418 aa8.42□□□□□ -1.06
SHMT2-211ENST00000554310 LINC00469Q8N7U9 141 aa8.42□□□□□ -1.06
SHMT2-211ENST00000554310 CIRBP-AS1Q8TBR5 109 aa8.42□□□□□ -1.06
SHMT2-211ENST00000554310 FLG2Q5D862 2391 aaPredicted RBP8.42□□□□□ -1.06
SHMT2-211ENST00000554310 IGLV5-45A0A087WSX0 123 aa8.41□□□□□ -1.06
SHMT2-211ENST00000554310 PLA2G1BP04054 148 aaKnown RBP8.41□□□□□ -1.06
SHMT2-211ENST00000554310 TSPEAR-AS2P59090 65 aa8.41□□□□□ -1.06
SHMT2-211ENST00000554310 RNASE13Q5GAN3 156 aaKnown RBP8.41□□□□□ -1.06
SHMT2-211ENST00000554310 IGHV3-64A0A075B6Q5 118 aa8.4□□□□□ -1.06
SHMT2-211ENST00000554310 FXYD2P54710 66 aa8.4□□□□□ -1.06
SHMT2-211ENST00000554310 CD164L2Q6UWJ8 174 aa8.4□□□□□ -1.06
SHMT2-211ENST00000554310 SCGB1D4Q6XE38 83 aa8.4□□□□□ -1.06
SHMT2-211ENST00000554310 SDIM1Q6ZPB5 146 aa8.4□□□□□ -1.06
SHMT2-211ENST00000554310 Q6ZVH6 145 aa8.4□□□□□ -1.06
SHMT2-211ENST00000554310 HIST1H4GQ99525 98 aa8.4□□□□□ -1.06
SHMT2-211ENST00000554310 SPANXB1Q9NS25 103 aaPredicted RBP8.4□□□□□ -1.06
SHMT2-211ENST00000554310 IGHV1-58A0A0C4DH39 117 aa8.39□□□□□ -1.07
SHMT2-211ENST00000554310 C9orf118A6NHY6 69 aa8.39□□□□□ -1.07
SHMT2-211ENST00000554310 SLPIP03973 132 aa8.39□□□□□ -1.07
SHMT2-211ENST00000554310 SMIM13P0DJ93 91 aa8.39□□□□□ -1.07
SHMT2-211ENST00000554310 HIGD2BQ4VC39 106 aa8.39□□□□□ -1.07
SHMT2-211ENST00000554310 GEMIN7Q9H840 131 aaKnown RBP8.39□□□□□ -1.07
SHMT2-211ENST00000554310 PTTG1IPP53801 180 aa8.38□□□□□ -1.07
SHMT2-211ENST00000554310 HERVK_113P63121 156 aa8.38□□□□□ -1.07
SHMT2-211ENST00000554310 CIRBPQ14011 172 aaKnown RBP8.38□□□□□ -1.07
SHMT2-211ENST00000554310 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.38□□□□□ -1.07
SHMT2-211ENST00000554310 LINC00242Q5T6M2 205 aa8.37□□□□□ -1.07
SHMT2-211ENST00000554310 MYCBP2O75592 4640 aa8.37□□□□□ -1.07
SHMT2-211ENST00000554310 TRAV13-1A0A0B4J241 112 aa8.36□□□□□ -1.07
SHMT2-211ENST00000554310 A0A1B0GWB2 263 aa8.36□□□□□ -1.07
SHMT2-211ENST00000554310 COX7A2LO14548 114 aa8.36□□□□□ -1.07
SHMT2-211ENST00000554310 UBE2V1Q13404 147 aa8.36□□□□□ -1.07
SHMT2-211ENST00000554310 PKIGQ9Y2B9 76 aa8.36□□□□□ -1.07
SHMT2-211ENST00000554310 TMEM238LA0A1B0GVL6 79 aa8.35□□□□□ -1.07
SHMT2-211ENST00000554310 A6NJY4 79 aa8.35□□□□□ -1.07
SHMT2-211ENST00000554310 PANO1I0J062 215 aa8.35□□□□□ -1.07
SHMT2-211ENST00000554310 MALP21145 153 aa8.35□□□□□ -1.07
SHMT2-211ENST00000554310 SRSF9Q13242 221 aaKnown RBP eCLIP8.35□□□□□ -1.07
SHMT2-211ENST00000554310 VAMP3Q15836 100 aa8.35□□□□□ -1.07
SHMT2-211ENST00000554310 NHP2Q9NX24 153 aaKnown RBP8.35□□□□□ -1.07
SHMT2-211ENST00000554310 CDKN2A-AS1Q9UH64 79 aa8.35□□□□□ -1.07
SHMT2-211ENST00000554310 SPACA4Q8TDM5 124 aa8.34□□□□□ -1.07
SHMT2-211ENST00000554310 IGLV5-39A0A0G2JS06 123 aa8.33□□□□□ -1.08
SHMT2-211ENST00000554310 A0A0J9YXY3 114 aa8.33□□□□□ -1.08
SHMT2-211ENST00000554310 TMEM238C9JI98 176 aa8.33□□□□□ -1.08
SHMT2-211ENST00000554310 ZNF561-AS1K7EIQ3 104 aa8.33□□□□□ -1.08
SHMT2-211ENST00000554310 SPINK8P0C7L1 97 aa8.33□□□□□ -1.08
SHMT2-211ENST00000554310 COX6A2Q02221 97 aa8.33□□□□□ -1.08
SHMT2-211ENST00000554310 RAB37Q96AX2 223 aa8.33□□□□□ -1.08
SHMT2-211ENST00000554310 CARD19Q96LW7 228 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 142.1 ms