RNA–Protein interactions for RNA: ENST00000554258.1

NEK9-204, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-204ENST00000554258 LINC01561Q8N1V8 128 aa10.62□□□□□ -0.71
NEK9-204ENST00000554258 IGLV4-69A0A075B6H9 119 aa10.61□□□□□ -0.71
NEK9-204ENST00000554258 IGLV5-45A0A087WSX0 123 aa10.61□□□□□ -0.71
NEK9-204ENST00000554258 A0A087WZ39 114 aa10.61□□□□□ -0.71
NEK9-204ENST00000554258 COX7A2LO14548 114 aa10.61□□□□□ -0.71
NEK9-204ENST00000554258 HERVK_113P63121 156 aa10.61□□□□□ -0.71
NEK9-204ENST00000554258 REG3GQ6UW15 175 aa10.61□□□□□ -0.71
NEK9-204ENST00000554258 USP17L23D6RBM5 183 aa10.6□□□□□ -0.71
NEK9-204ENST00000554258 C5orf38Q86SI9 138 aa10.6□□□□□ -0.71
NEK9-204ENST00000554258 C15orf56Q8N910 161 aa10.6□□□□□ -0.71
NEK9-204ENST00000554258 SNRPEP62304 92 aaKnown RBP10.59□□□□□ -0.71
NEK9-204ENST00000554258 CFAP161Q6P656 301 aa10.59□□□□□ -0.71
NEK9-204ENST00000554258 MAP1LC3CQ9BXW4 147 aa10.59□□□□□ -0.71
NEK9-204ENST00000554258 CHTOPQ9Y3Y2 248 aaKnown RBP10.59□□□□□ -0.71
NEK9-204ENST00000554258 IGHV1-58A0A0C4DH39 117 aa10.58□□□□□ -0.72
NEK9-204ENST00000554258 F8VRH5 84 aa10.58□□□□□ -0.72
NEK9-204ENST00000554258 DPH3Q96FX2 82 aa10.58□□□□□ -0.72
NEK9-204ENST00000554258 HIST1H2BLQ99880 126 aa10.58□□□□□ -0.72
NEK9-204ENST00000554258 GEMIN7Q9H840 131 aaKnown RBP10.58□□□□□ -0.72
NEK9-204ENST00000554258 CDKN2A-AS1Q9UH64 79 aa10.58□□□□□ -0.72
NEK9-204ENST00000554258 GVQW2A0A096LPI5 108 aaPredicted RBP10.57□□□□□ -0.72
NEK9-204ENST00000554258 SYS1-DBNDD2H3BUS1 97 aa10.57□□□□□ -0.72
NEK9-204ENST00000554258 C9orf163Q8N9P6 203 aa10.57□□□□□ -0.72
NEK9-204ENST00000554258 MRPL35Q9NZE8 188 aaKnown RBP10.57□□□□□ -0.72
NEK9-204ENST00000554258 IGHV3-64A0A075B6Q5 118 aa10.56□□□□□ -0.72
NEK9-204ENST00000554258 C11orf86A6NJI1 115 aa10.56□□□□□ -0.72
NEK9-204ENST00000554258 C3orf79P0CE67 100 aa10.56□□□□□ -0.72
NEK9-204ENST00000554258 C7orf33Q8WU49 177 aa10.56□□□□□ -0.72
NEK9-204ENST00000554258 APOMO95445 188 aa10.55□□□□□ -0.72
NEK9-204ENST00000554258 ZNF22P17026 224 aaPredicted RBP10.55□□□□□ -0.72
NEK9-204ENST00000554258 MALP21145 153 aa10.55□□□□□ -0.72
NEK9-204ENST00000554258 PET117Q6UWS5 81 aa10.55□□□□□ -0.72
NEK9-204ENST00000554258 SDIM1Q6ZPB5 146 aa10.55□□□□□ -0.72
NEK9-204ENST00000554258 S100A2P29034 98 aa10.54□□□□□ -0.72
NEK9-204ENST00000554258 CIRBPQ14011 172 aaKnown RBP10.54□□□□□ -0.72
NEK9-204ENST00000554258 LINC01545Q5VT33 79 aa10.54□□□□□ -0.72
NEK9-204ENST00000554258 LINC00469Q8N7U9 141 aa10.54□□□□□ -0.72
NEK9-204ENST00000554258 OR10D4PQ8NGN7 298 aa10.54□□□□□ -0.72
NEK9-204ENST00000554258 A0A087WYN8 130 aa10.53□□□□□ -0.72
NEK9-204ENST00000554258 SLPIP03973 132 aa10.53□□□□□ -0.72
NEK9-204ENST00000554258 KIAA0087Q14695 138 aa10.53□□□□□ -0.72
NEK9-204ENST00000554258 SMIM1B2RUZ4 78 aa10.52□□□□□ -0.73
NEK9-204ENST00000554258 H0Y8G0 127 aa10.52□□□□□ -0.73
NEK9-204ENST00000554258 PRR3P79522 188 aaKnown RBP10.52□□□□□ -0.73
NEK9-204ENST00000554258 IGLV5-39A0A0G2JS06 123 aa10.51□□□□□ -0.73
NEK9-204ENST00000554258 hDV102S1A0JD36 115 aa10.51□□□□□ -0.73
NEK9-204ENST00000554258 H3BRM9 83 aa10.51□□□□□ -0.73
NEK9-204ENST00000554258 CNBPP62633 177 aaKnown RBP10.51□□□□□ -0.73
NEK9-204ENST00000554258 F8WDY8 70 aa10.5□□□□□ -0.73
NEK9-204ENST00000554258 DPM2O94777 84 aa10.5□□□□□ -0.73
NEK9-204ENST00000554258 PLNP26678 52 aa10.5□□□□□ -0.73
NEK9-204ENST00000554258 KRTDAPP60985 99 aa10.5□□□□□ -0.73
NEK9-204ENST00000554258 HIGD2BQ4VC39 106 aa10.5□□□□□ -0.73
NEK9-204ENST00000554258 SPINK6Q6UWN8 80 aa10.5□□□□□ -0.73
NEK9-204ENST00000554258 ORAOV1Q8WV07 137 aa10.5□□□□□ -0.73
NEK9-204ENST00000554258 C2orf48Q96LS8 159 aa10.5□□□□□ -0.73
NEK9-204ENST00000554258 TMEM223A0PJW6 202 aa10.49□□□□□ -0.73
NEK9-204ENST00000554258 IGKCP01834 107 aa10.49□□□□□ -0.73
NEK9-204ENST00000554258 TMEM170BQ5T4T1 132 aa10.49□□□□□ -0.73
NEK9-204ENST00000554258 PMCHL2Q9BQD1 86 aa10.49□□□□□ -0.73
NEK9-204ENST00000554258 ZNF561-AS1K7EIQ3 104 aa10.48□□□□□ -0.73
NEK9-204ENST00000554258 SPINK8P0C7L1 97 aa10.48□□□□□ -0.73
NEK9-204ENST00000554258 SPAG11BQ08648 103 aa10.48□□□□□ -0.73
NEK9-204ENST00000554258 Q8IZM0 81 aa10.48□□□□□ -0.73
NEK9-204ENST00000554258 TMA7Q9Y2S6 64 aaKnown RBP10.48□□□□□ -0.73
NEK9-204ENST00000554258 LINC00526Q96FQ7 95 aa10.47□□□□□ -0.73
NEK9-204ENST00000554258 CHTF8P0CG12 524 aa10.46□□□□□ -0.73
NEK9-204ENST00000554258 PLAC8Q9NZF1 115 aa10.45□□□□□ -0.74
NEK9-204ENST00000554258 C20orf202A1L168 122 aa10.44□□□□□ -0.74
NEK9-204ENST00000554258 AKR1D1P51857 326 aa10.44□□□□□ -0.74
NEK9-204ENST00000554258 SYCNQ0VAF6 134 aa10.44□□□□□ -0.74
NEK9-204ENST00000554258 PRR4Q16378 134 aa10.44□□□□□ -0.74
NEK9-204ENST00000554258 SPACA4Q8TDM5 124 aa10.44□□□□□ -0.74
NEK9-204ENST00000554258 COX7B2Q8TF08 81 aa10.44□□□□□ -0.74
NEK9-204ENST00000554258 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.43□□□□□ -0.74
NEK9-204ENST00000554258 RNF151Q2KHN1 245 aa10.43□□□□□ -0.74
NEK9-204ENST00000554258 C6orf226Q5I0X4 101 aa10.43□□□□□ -0.74
NEK9-204ENST00000554258 TOMM7Q9P0U1 55 aa10.43□□□□□ -0.74
NEK9-204ENST00000554258 NDUFA1O15239 70 aa10.42□□□□□ -0.74
NEK9-204ENST00000554258 PRSS2P07478 247 aa10.42□□□□□ -0.74
NEK9-204ENST00000554258 C10orf25Q5T742 122 aa10.42□□□□□ -0.74
NEK9-204ENST00000554258 UNQ6190/PRO20217Q6UXQ8 127 aa10.42□□□□□ -0.74
NEK9-204ENST00000554258 CAMK2N2Q96S95 79 aa10.42□□□□□ -0.74
NEK9-204ENST00000554258 CXCL5P42830 114 aa10.41□□□□□ -0.74
NEK9-204ENST00000554258 CARD19Q96LW7 228 aa10.41□□□□□ -0.74
NEK9-204ENST00000554258 C2orf82Q6UX34 121 aa10.4□□□□□ -0.74
NEK9-204ENST00000554258 TRBV30A0A0K0K1B3 111 aa10.39□□□□□ -0.75
NEK9-204ENST00000554258 E9PLD3 99 aa10.39□□□□□ -0.75
NEK9-204ENST00000554258 LEPROTO15243 131 aa10.39□□□□□ -0.75
NEK9-204ENST00000554258 HERVK_113P61574 105 aa10.39□□□□□ -0.75
NEK9-204ENST00000554258 C6orf48Q9UBA6 75 aa10.39□□□□□ -0.75
NEK9-204ENST00000554258 CKS1BP61024 79 aa10.38□□□□□ -0.75
NEK9-204ENST00000554258 SRSF9Q13242 221 aaKnown RBP eCLIP10.38□□□□□ -0.75
NEK9-204ENST00000554258 STPG4Q8N801 248 aa10.38□□□□□ -0.75
NEK9-204ENST00000554258 PLEKHB2Q96CS7 222 aa10.38□□□□□ -0.75
NEK9-204ENST00000554258 ZNF625Q96I27 306 aaPredicted RBP10.38□□□□□ -0.75
NEK9-204ENST00000554258 TLX1NBP0CAT3 122 aa10.37□□□□□ -0.75
NEK9-204ENST00000554258 TSPEAR-AS2P59090 65 aa10.36□□□□□ -0.75
NEK9-204ENST00000554258 JOSD1Q15040 202 aaPredicted RBP10.36□□□□□ -0.75
NEK9-204ENST00000554258 SFTA2Q6UW10 78 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms