RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 SPAG11BQ08648 103 aa6.25□□□□□ -1.41
LIMA1-211ENST00000552338 ANKRD39Q53RE8 183 aa6.25□□□□□ -1.41
LIMA1-211ENST00000552338 ATOH7Q8N100 152 aa6.25□□□□□ -1.41
LIMA1-211ENST00000552338 Q8N814 137 aa6.25□□□□□ -1.41
LIMA1-211ENST00000552338 TRBV30A0A0K0K1B3 111 aa6.24□□□□□ -1.41
LIMA1-211ENST00000552338 NDUFA1O15239 70 aa6.24□□□□□ -1.41
LIMA1-211ENST00000552338 DLEU1O43261 78 aa6.24□□□□□ -1.41
LIMA1-211ENST00000552338 SLPIP03973 132 aa6.24□□□□□ -1.41
LIMA1-211ENST00000552338 HERV-K104P63124 156 aa6.24□□□□□ -1.41
LIMA1-211ENST00000552338 MAJINQ3KP22 176 aa6.24□□□□□ -1.41
LIMA1-211ENST00000552338 C6orf226Q5I0X4 101 aa6.24□□□□□ -1.41
LIMA1-211ENST00000552338 PRSS2P07478 247 aa6.23□□□□□ -1.41
LIMA1-211ENST00000552338 TLX1NBP0CAT3 122 aa6.23□□□□□ -1.41
LIMA1-211ENST00000552338 TSPEAR-AS2P59090 65 aa6.23□□□□□ -1.41
LIMA1-211ENST00000552338 CDPF1Q6NVV7 123 aa6.23□□□□□ -1.41
LIMA1-211ENST00000552338 VAMP8Q9BV40 100 aa6.23□□□□□ -1.41
LIMA1-211ENST00000552338 MYMXA0A1B0GTQ4 84 aa6.22□□□□□ -1.41
LIMA1-211ENST00000552338 LINC00587B1AMM8 73 aa6.22□□□□□ -1.41
LIMA1-211ENST00000552338 GHRHP01286 108 aa6.22□□□□□ -1.41
LIMA1-211ENST00000552338 COX8AP10176 69 aa6.22□□□□□ -1.41
LIMA1-211ENST00000552338 SYCNQ0VAF6 134 aa6.22□□□□□ -1.41
LIMA1-211ENST00000552338 COX17Q14061 63 aa6.22□□□□□ -1.41
LIMA1-211ENST00000552338 BOD1L2Q8IYS8 172 aa6.22□□□□□ -1.41
LIMA1-211ENST00000552338 C9orf163Q8N9P6 203 aa6.22□□□□□ -1.41
LIMA1-211ENST00000552338 NDUFA12Q9UI09 145 aa6.22□□□□□ -1.41
LIMA1-211ENST00000552338 RYR2Q92736 4967 aa6.21□□□□□ -1.41
LIMA1-211ENST00000552338 A0A1B0GVY2 172 aa6.21□□□□□ -1.42
LIMA1-211ENST00000552338 LGALS3P17931 250 aaKnown RBP6.21□□□□□ -1.42
LIMA1-211ENST00000552338 CKS1BP61024 79 aa6.21□□□□□ -1.42
LIMA1-211ENST00000552338 S100A12P80511 92 aa6.21□□□□□ -1.42
LIMA1-211ENST00000552338 HIGD2BQ4VC39 106 aa6.21□□□□□ -1.42
LIMA1-211ENST00000552338 SPATA45Q537H7 98 aa6.21□□□□□ -1.42
LIMA1-211ENST00000552338 UNQ6190/PRO20217Q6UXQ8 127 aa6.21□□□□□ -1.42
LIMA1-211ENST00000552338 Q6ZRU5 148 aa6.21□□□□□ -1.42
LIMA1-211ENST00000552338 LINC00518Q8N0U6 118 aa6.21□□□□□ -1.42
LIMA1-211ENST00000552338 TOMM7Q9P0U1 55 aa6.21□□□□□ -1.42
LIMA1-211ENST00000552338 FAT2Q9NYQ8 4349 aa6.21□□□□□ -1.42
LIMA1-211ENST00000552338 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-211ENST00000552338 TMEM238LA0A1B0GVL6 79 aa6.2□□□□□ -1.42
LIMA1-211ENST00000552338 LECT2O14960 151 aa6.2□□□□□ -1.42
LIMA1-211ENST00000552338 TIMM17BO60830 172 aa6.2□□□□□ -1.42
LIMA1-211ENST00000552338 C10orf25Q5T742 122 aa6.2□□□□□ -1.42
LIMA1-211ENST00000552338 C2orf82Q6UX34 121 aa6.2□□□□□ -1.42
LIMA1-211ENST00000552338 CAMK2N2Q96S95 79 aa6.2□□□□□ -1.42
LIMA1-211ENST00000552338 PPDPFQ9H3Y8 114 aa6.2□□□□□ -1.42
LIMA1-211ENST00000552338 C6orf48Q9UBA6 75 aa6.2□□□□□ -1.42
LIMA1-211ENST00000552338 PAM16Q9Y3D7 125 aa6.2□□□□□ -1.42
LIMA1-211ENST00000552338 LOC107984156A0A0G2JMH3 177 aa6.19□□□□□ -1.42
LIMA1-211ENST00000552338 PTTG1IPP53801 180 aa6.19□□□□□ -1.42
LIMA1-211ENST00000552338 PCP2Q8IVA1 136 aa6.19□□□□□ -1.42
LIMA1-211ENST00000552338 ARL17AQ8IVW1 177 aa6.19□□□□□ -1.42
LIMA1-211ENST00000552338 CARD19Q96LW7 228 aa6.19□□□□□ -1.42
LIMA1-211ENST00000552338 PKIGQ9Y2B9 76 aa6.19□□□□□ -1.42
LIMA1-211ENST00000552338 A0A0J9YXY3 114 aa6.18□□□□□ -1.42
LIMA1-211ENST00000552338 ZNF815PA8K554 130 aa6.18□□□□□ -1.42
LIMA1-211ENST00000552338 LINC00526Q96FQ7 95 aa6.18□□□□□ -1.42
LIMA1-211ENST00000552338 C12orf57Q99622 126 aa6.18□□□□□ -1.42
LIMA1-211ENST00000552338 LITAFQ99732 161 aa6.18□□□□□ -1.42
LIMA1-211ENST00000552338 HIGD1BQ9P298 99 aa6.18□□□□□ -1.42
LIMA1-211ENST00000552338 NDUFC2-KCTD14E9PQ53 114 aa6.17□□□□□ -1.42
LIMA1-211ENST00000552338 SDIM1Q6ZPB5 146 aa6.17□□□□□ -1.42
LIMA1-211ENST00000552338 Q6ZVH6 145 aa6.17□□□□□ -1.42
LIMA1-211ENST00000552338 TTTY13Q9BZ97 58 aa6.17□□□□□ -1.42
LIMA1-211ENST00000552338 SPANXB1Q9NS25 103 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-211ENST00000552338 ERG28Q9UKR5 140 aa6.17□□□□□ -1.42
LIMA1-211ENST00000552338 EPM2AB3EWF7 344 aa6.16□□□□□ -1.42
LIMA1-211ENST00000552338 CIRBPQ14011 172 aaKnown RBP6.16□□□□□ -1.42
LIMA1-211ENST00000552338 SLC25A34Q6PIV7 304 aa6.16□□□□□ -1.42
LIMA1-211ENST00000552338 DNAH11Q96DT5 4516 aa6.15□□□□□ -1.42
LIMA1-211ENST00000552338 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.15□□□□□ -1.42
LIMA1-211ENST00000552338 LOC107984640A0A0U1RRK4 108 aa6.15□□□□□ -1.42
LIMA1-211ENST00000552338 C16orf90A8MZG2 172 aa6.15□□□□□ -1.42
LIMA1-211ENST00000552338 KRTAP10-2P60368 255 aa6.15□□□□□ -1.42
LIMA1-211ENST00000552338 C14orf144Q96I85 54 aa6.15□□□□□ -1.42
LIMA1-211ENST00000552338 SPANXDQ9BXN6 97 aa6.15□□□□□ -1.42
LIMA1-211ENST00000552338 SPANXCQ9NY87 97 aa6.15□□□□□ -1.42
LIMA1-211ENST00000552338 UQCR10Q9UDW1 63 aa6.15□□□□□ -1.42
LIMA1-211ENST00000552338 IGLV5-52A0A0A0MRZ9 124 aa6.14□□□□□ -1.43
LIMA1-211ENST00000552338 C9orf116Q5BN46 136 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-211ENST00000552338 Q6ZRP5 223 aa6.14□□□□□ -1.43
LIMA1-211ENST00000552338 C2orf91Q6ZV80 131 aa6.14□□□□□ -1.43
LIMA1-211ENST00000552338 MIEN1Q9BRT3 115 aa6.14□□□□□ -1.43
LIMA1-211ENST00000552338 TP73-AS1Q9UF72 201 aa6.14□□□□□ -1.43
LIMA1-211ENST00000552338 PLA2G2DQ9UNK4 145 aa6.14□□□□□ -1.43
LIMA1-211ENST00000552338 HECTD4Q9Y4D8 3996 aa6.14□□□□□ -1.43
LIMA1-211ENST00000552338 PKD1P98161 4303 aa6.13□□□□□ -1.43
LIMA1-211ENST00000552338 TMEM238C9JI98 176 aa6.13□□□□□ -1.43
LIMA1-211ENST00000552338 SMIM13P0DJ93 91 aa6.13□□□□□ -1.43
LIMA1-211ENST00000552338 IFITM1P13164 125 aa6.13□□□□□ -1.43
LIMA1-211ENST00000552338 TAL2Q16559 108 aa6.13□□□□□ -1.43
LIMA1-211ENST00000552338 MEIG1Q5JSS6 88 aa6.13□□□□□ -1.43
LIMA1-211ENST00000552338 ADAMTSL4-AS1Q5T5F5 129 aa6.13□□□□□ -1.43
LIMA1-211ENST00000552338 Q6ZSA8 131 aa6.13□□□□□ -1.43
LIMA1-211ENST00000552338 DNAH5Q8TE73 4624 aa6.13□□□□□ -1.43
LIMA1-211ENST00000552338 RYR3Q15413 4870 aa6.13□□□□□ -1.43
LIMA1-211ENST00000552338 GCSHP23434 173 aa6.12□□□□□ -1.43
LIMA1-211ENST00000552338 SCGB1D4Q6XE38 83 aa6.12□□□□□ -1.43
LIMA1-211ENST00000552338 LINC00474Q9P2X8 69 aa6.12□□□□□ -1.43
LIMA1-211ENST00000552338 PFN2P35080 140 aa6.11□□□□□ -1.43
LIMA1-211ENST00000552338 LINC00158P58513 81 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms