RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 LINC00526Q96FQ7 95 aa8.32□□□□□ -1.08
PRPF40B-210ENST00000549547 DPH3Q96FX2 82 aa8.32□□□□□ -1.08
PRPF40B-210ENST00000549547 HIST1H2BLQ99880 126 aa8.32□□□□□ -1.08
PRPF40B-210ENST00000549547 LINC00474Q9P2X8 69 aa8.32□□□□□ -1.08
PRPF40B-210ENST00000549547 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.32□□□□□ -1.08
PRPF40B-210ENST00000549547 M0R143 59 aa8.31□□□□□ -1.08
PRPF40B-210ENST00000549547 HERVK_113P63121 156 aa8.31□□□□□ -1.08
PRPF40B-210ENST00000549547 JOSD1Q15040 202 aaPredicted RBP8.31□□□□□ -1.08
PRPF40B-210ENST00000549547 SPACA4Q8TDM5 124 aa8.31□□□□□ -1.08
PRPF40B-210ENST00000549547 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.3□□□□□ -1.08
PRPF40B-210ENST00000549547 HBDP02042 147 aa8.3□□□□□ -1.08
PRPF40B-210ENST00000549547 ZC2HC1BQ5TFG8 222 aa8.3□□□□□ -1.08
PRPF40B-210ENST00000549547 Q6ZRU5 148 aa8.3□□□□□ -1.08
PRPF40B-210ENST00000549547 GEMIN7Q9H840 131 aaKnown RBP8.3□□□□□ -1.08
PRPF40B-210ENST00000549547 LOC107984640A0A0U1RRK4 108 aa8.29□□□□□ -1.08
PRPF40B-210ENST00000549547 NDUFA1O15239 70 aa8.29□□□□□ -1.08
PRPF40B-210ENST00000549547 FABP4P15090 132 aa8.29□□□□□ -1.08
PRPF40B-210ENST00000549547 RNF151Q2KHN1 245 aa8.29□□□□□ -1.08
PRPF40B-210ENST00000549547 IGKV2-24A0A0C4DH68 120 aa8.28□□□□□ -1.08
PRPF40B-210ENST00000549547 PANO1I0J062 215 aa8.28□□□□□ -1.08
PRPF40B-210ENST00000549547 CHTF8P0CG12 524 aa8.28□□□□□ -1.08
PRPF40B-210ENST00000549547 PMVKQ15126 192 aa8.28□□□□□ -1.08
PRPF40B-210ENST00000549547 MRPL35Q9NZE8 188 aaKnown RBP8.28□□□□□ -1.08
PRPF40B-210ENST00000549547 PLAC8Q9NZF1 115 aa8.28□□□□□ -1.08
PRPF40B-210ENST00000549547 SRRM2Q9UQ35 2752 aaKnown RBP8.28□□□□□ -1.08
PRPF40B-210ENST00000549547 A0A087WYN8 130 aa8.27□□□□□ -1.09
PRPF40B-210ENST00000549547 A0A096LNI7 61 aa8.27□□□□□ -1.09
PRPF40B-210ENST00000549547 TINCRA0A1B0GVN0 87 aa8.27□□□□□ -1.09
PRPF40B-210ENST00000549547 DLEU1O43261 78 aa8.27□□□□□ -1.09
PRPF40B-210ENST00000549547 LEPROTL1O95214 131 aa8.27□□□□□ -1.09
PRPF40B-210ENST00000549547 PRSS2P07478 247 aa8.27□□□□□ -1.09
PRPF40B-210ENST00000549547 INAFM2P0DMQ5 153 aa8.27□□□□□ -1.09
PRPF40B-210ENST00000549547 MAJINQ3KP22 176 aa8.27□□□□□ -1.09
PRPF40B-210ENST00000549547 CST9LQ9H4G1 147 aa8.27□□□□□ -1.09
PRPF40B-210ENST00000549547 A0A0J9YXV3 536 aa8.26□□□□□ -1.09
PRPF40B-210ENST00000549547 ATP5LO75964 103 aa8.26□□□□□ -1.09
PRPF40B-210ENST00000549547 KIAA0087Q14695 138 aa8.25□□□□□ -1.09
PRPF40B-210ENST00000549547 STPG4Q8N801 248 aa8.25□□□□□ -1.09
PRPF40B-210ENST00000549547 CDKN2A-AS1Q9UH64 79 aa8.25□□□□□ -1.09
PRPF40B-210ENST00000549547 IGLV5-45A0A087WSX0 123 aa8.24□□□□□ -1.09
PRPF40B-210ENST00000549547 TRBV30A0A0K0K1B3 111 aa8.24□□□□□ -1.09
PRPF40B-210ENST00000549547 C3orf79P0CE67 100 aa8.24□□□□□ -1.09
PRPF40B-210ENST00000549547 PTTG1IPP53801 180 aa8.24□□□□□ -1.09
PRPF40B-210ENST00000549547 RPL18AQ02543 176 aaKnown RBP8.24□□□□□ -1.09
PRPF40B-210ENST00000549547 Q8IZM0 81 aa8.24□□□□□ -1.09
PRPF40B-210ENST00000549547 IFI27L1Q96BM0 104 aa8.24□□□□□ -1.09
PRPF40B-210ENST00000549547 TOMM7Q9P0U1 55 aa8.24□□□□□ -1.09
PRPF40B-210ENST00000549547 HSPB8Q9UJY1 196 aa8.24□□□□□ -1.09
PRPF40B-210ENST00000549547 H3BRM9 83 aa8.23□□□□□ -1.09
PRPF40B-210ENST00000549547 CKS1BP61024 79 aa8.23□□□□□ -1.09
PRPF40B-210ENST00000549547 RPL37AP61513 92 aaKnown RBP8.23□□□□□ -1.09
PRPF40B-210ENST00000549547 GAGE2BQ13066 116 aa8.23□□□□□ -1.09
PRPF40B-210ENST00000549547 C6orf226Q5I0X4 101 aa8.23□□□□□ -1.09
PRPF40B-210ENST00000549547 C7orf33Q8WU49 177 aa8.23□□□□□ -1.09
PRPF40B-210ENST00000549547 TLX1NBP0CAT3 122 aa8.22□□□□□ -1.09
PRPF40B-210ENST00000549547 CXCL5P42830 114 aa8.22□□□□□ -1.09
PRPF40B-210ENST00000549547 UNQ6190/PRO20217Q6UXQ8 127 aa8.22□□□□□ -1.09
PRPF40B-210ENST00000549547 C6orf48Q9UBA6 75 aa8.22□□□□□ -1.09
PRPF40B-210ENST00000549547 SYS1-DBNDD2H3BUS1 97 aa8.21□□□□□ -1.1
PRPF40B-210ENST00000549547 IGLC3P0DOY3 106 aa8.21□□□□□ -1.1
PRPF40B-210ENST00000549547 C10orf25Q5T742 122 aa8.21□□□□□ -1.1
PRPF40B-210ENST00000549547 SVIPQ8NHG7 77 aa8.21□□□□□ -1.1
PRPF40B-210ENST00000549547 PRO1933Q9H354 126 aa8.21□□□□□ -1.1
PRPF40B-210ENST00000549547 SMIM1B2RUZ4 78 aa8.2□□□□□ -1.1
PRPF40B-210ENST00000549547 KRTDAPP60985 99 aa8.2□□□□□ -1.1
PRPF40B-210ENST00000549547 C2orf82Q6UX34 121 aa8.2□□□□□ -1.1
PRPF40B-210ENST00000549547 MAP1LC3CQ9BXW4 147 aa8.2□□□□□ -1.1
PRPF40B-210ENST00000549547 PKHD1L1Q86WI1 4243 aa8.19□□□□□ -1.1
PRPF40B-210ENST00000549547 F8VRH5 84 aa8.19□□□□□ -1.1
PRPF40B-210ENST00000549547 PET117Q6UWS5 81 aa8.19□□□□□ -1.1
PRPF40B-210ENST00000549547 COX7B2Q8TF08 81 aa8.19□□□□□ -1.1
PRPF40B-210ENST00000549547 TRAV12-1A0A0B4J245 112 aa8.18□□□□□ -1.1
PRPF40B-210ENST00000549547 NDUFC2-KCTD14E9PQ53 114 aa8.18□□□□□ -1.1
PRPF40B-210ENST00000549547 LINC01545Q5VT33 79 aa8.18□□□□□ -1.1
PRPF40B-210ENST00000549547 Q6ZRP5 223 aa8.18□□□□□ -1.1
PRPF40B-210ENST00000549547 CHTOPQ9Y3Y2 248 aaKnown RBP8.18□□□□□ -1.1
PRPF40B-210ENST00000549547 SPINK8P0C7L1 97 aa8.17□□□□□ -1.1
PRPF40B-210ENST00000549547 KRTAP10-4P60372 401 aaPredicted RBP8.17□□□□□ -1.1
PRPF40B-210ENST00000549547 ODF1Q14990 250 aa8.17□□□□□ -1.1
PRPF40B-210ENST00000549547 C21orf62-AS1Q17RA5 79 aa8.17□□□□□ -1.1
PRPF40B-210ENST00000549547 COL5A1-AS1Q5SY13 56 aa8.17□□□□□ -1.1
PRPF40B-210ENST00000549547 SNHG12Q9BXW3 62 aa8.17□□□□□ -1.1
PRPF40B-210ENST00000549547 MYCBP2O75592 4640 aa8.17□□□□□ -1.1
PRPF40B-210ENST00000549547 ZNF22P17026 224 aaPredicted RBP8.16□□□□□ -1.1
PRPF40B-210ENST00000549547 GAGE2EQ4V326 116 aa8.16□□□□□ -1.1
PRPF40B-210ENST00000549547 C9orf116Q5BN46 136 aaPredicted RBP8.16□□□□□ -1.1
PRPF40B-210ENST00000549547 GAGE2DQ9UEU5 116 aa8.16□□□□□ -1.1
PRPF40B-210ENST00000549547 C11orf86A6NJI1 115 aa8.15□□□□□ -1.1
PRPF40B-210ENST00000549547 H0Y8G0 127 aa8.15□□□□□ -1.1
PRPF40B-210ENST00000549547 PMCHL2Q9BQD1 86 aa8.15□□□□□ -1.1
PRPF40B-210ENST00000549547 IGLV5-39A0A0G2JS06 123 aa8.14□□□□□ -1.11
PRPF40B-210ENST00000549547 A0A1W2PNN7 141 aa8.14□□□□□ -1.11
PRPF40B-210ENST00000549547 HSBP1L1C9JCN9 74 aa8.14□□□□□ -1.11
PRPF40B-210ENST00000549547 SCGB1D1O95968 90 aa8.14□□□□□ -1.11
PRPF40B-210ENST00000549547 TMEM170BQ5T4T1 132 aa8.14□□□□□ -1.11
PRPF40B-210ENST00000549547 MIEN1Q9BRT3 115 aa8.14□□□□□ -1.11
PRPF40B-210ENST00000549547 FLG2Q5D862 2391 aaPredicted RBP8.13□□□□□ -1.11
PRPF40B-210ENST00000549547 SFTA2Q6UW10 78 aa8.13□□□□□ -1.11
PRPF40B-210ENST00000549547 C20orf202A1L168 122 aa8.12□□□□□ -1.11
PRPF40B-210ENST00000549547 PRR3P79522 188 aaKnown RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms