RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 HSPG2P98160 4391 aa7.92□□□□□ -1.14
VPS33A-207ENST00000542790 PANO1I0J062 215 aa7.92□□□□□ -1.14
VPS33A-207ENST00000542790 NDUFA1O15239 70 aa7.92□□□□□ -1.14
VPS33A-207ENST00000542790 RNF151Q2KHN1 245 aa7.92□□□□□ -1.14
VPS33A-207ENST00000542790 LINC00469Q8N7U9 141 aa7.92□□□□□ -1.14
VPS33A-207ENST00000542790 LINC00474Q9P2X8 69 aa7.92□□□□□ -1.14
VPS33A-207ENST00000542790 PRSS2P07478 247 aa7.91□□□□□ -1.14
VPS33A-207ENST00000542790 KIAA0087Q14695 138 aa7.91□□□□□ -1.14
VPS33A-207ENST00000542790 SPACA4Q8TDM5 124 aa7.91□□□□□ -1.14
VPS33A-207ENST00000542790 MRPL35Q9NZE8 188 aaKnown RBP7.91□□□□□ -1.14
VPS33A-207ENST00000542790 IGLV5-45A0A087WSX0 123 aa7.9□□□□□ -1.14
VPS33A-207ENST00000542790 IGKV2-24A0A0C4DH68 120 aa7.9□□□□□ -1.14
VPS33A-207ENST00000542790 LOC107984640A0A0U1RRK4 108 aa7.9□□□□□ -1.14
VPS33A-207ENST00000542790 SERF1AO75920 110 aa7.9□□□□□ -1.14
VPS33A-207ENST00000542790 CHTF8P0CG12 524 aa7.9□□□□□ -1.14
VPS33A-207ENST00000542790 IGLC3P0DOY3 106 aa7.9□□□□□ -1.14
VPS33A-207ENST00000542790 S100A1P23297 94 aa7.9□□□□□ -1.14
VPS33A-207ENST00000542790 C6orf226Q5I0X4 101 aa7.9□□□□□ -1.14
VPS33A-207ENST00000542790 Q5VSD8 79 aa7.9□□□□□ -1.14
VPS33A-207ENST00000542790 A0A096LNI7 61 aa7.89□□□□□ -1.15
VPS33A-207ENST00000542790 H3BRM9 83 aa7.89□□□□□ -1.15
VPS33A-207ENST00000542790 CKS1BP61024 79 aa7.89□□□□□ -1.15
VPS33A-207ENST00000542790 MAJINQ3KP22 176 aa7.89□□□□□ -1.15
VPS33A-207ENST00000542790 UNQ6190/PRO20217Q6UXQ8 127 aa7.89□□□□□ -1.15
VPS33A-207ENST00000542790 Q8IZM0 81 aa7.89□□□□□ -1.15
VPS33A-207ENST00000542790 FAM19A2Q8N3H0 131 aa7.89□□□□□ -1.15
VPS33A-207ENST00000542790 IFI27L1Q96BM0 104 aa7.89□□□□□ -1.15
VPS33A-207ENST00000542790 KRTAP4-9Q9BYQ8 210 aa7.89□□□□□ -1.15
VPS33A-207ENST00000542790 KRTAP4-5Q9BYR2 181 aa7.89□□□□□ -1.15
VPS33A-207ENST00000542790 TOMM7Q9P0U1 55 aa7.89□□□□□ -1.15
VPS33A-207ENST00000542790 DNAH8Q96JB1 4490 aa7.88□□□□□ -1.15
VPS33A-207ENST00000542790 A0A087WYN8 130 aa7.88□□□□□ -1.15
VPS33A-207ENST00000542790 GAGE2BQ13066 116 aa7.88□□□□□ -1.15
VPS33A-207ENST00000542790 C10orf25Q5T742 122 aa7.88□□□□□ -1.15
VPS33A-207ENST00000542790 TRBV30A0A0K0K1B3 111 aa7.87□□□□□ -1.15
VPS33A-207ENST00000542790 SMIM1B2RUZ4 78 aa7.87□□□□□ -1.15
VPS33A-207ENST00000542790 LEPROTL1O95214 131 aa7.87□□□□□ -1.15
VPS33A-207ENST00000542790 PTTG1IPP53801 180 aa7.87□□□□□ -1.15
VPS33A-207ENST00000542790 C2orf82Q6UX34 121 aa7.87□□□□□ -1.15
VPS33A-207ENST00000542790 PLAC8Q9NZF1 115 aa7.87□□□□□ -1.15
VPS33A-207ENST00000542790 C6orf48Q9UBA6 75 aa7.87□□□□□ -1.15
VPS33A-207ENST00000542790 CHTOPQ9Y3Y2 248 aaKnown RBP7.87□□□□□ -1.15
VPS33A-207ENST00000542790 TRAV12-1A0A0B4J245 112 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 HIST1H2BKO60814 126 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 HIST1H2BJP06899 126 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 HIST1H2BOP23527 126 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 HIST1H2BBP33778 126 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 HIST1H2BDP58876 126 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 HIST1H2BCP62807 126 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 RPL18AQ02543 176 aaKnown RBP7.86□□□□□ -1.15
VPS33A-207ENST00000542790 HIST2H2BEQ16778 126 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.86□□□□□ -1.15
VPS33A-207ENST00000542790 STPG4Q8N801 248 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 HIST1H2BHQ93079 126 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 HIST1H2BNQ99877 126 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 HIST1H2BMQ99879 126 aa7.86□□□□□ -1.15
VPS33A-207ENST00000542790 NUPR1O60356 82 aa7.85□□□□□ -1.15
VPS33A-207ENST00000542790 SPINK8P0C7L1 97 aa7.85□□□□□ -1.15
VPS33A-207ENST00000542790 TLX1NBP0CAT3 122 aa7.85□□□□□ -1.15
VPS33A-207ENST00000542790 CXCL5P42830 114 aa7.85□□□□□ -1.15
VPS33A-207ENST00000542790 COX7B2Q8TF08 81 aa7.85□□□□□ -1.15
VPS33A-207ENST00000542790 HSPB8Q9UJY1 196 aa7.85□□□□□ -1.15
VPS33A-207ENST00000542790 F8VRH5 84 aa7.84□□□□□ -1.15
VPS33A-207ENST00000542790 ATP6V1G1O75348 118 aa7.84□□□□□ -1.15
VPS33A-207ENST00000542790 ZNF22P17026 224 aaPredicted RBP7.84□□□□□ -1.15
VPS33A-207ENST00000542790 TMEM170BQ5T4T1 132 aa7.84□□□□□ -1.15
VPS33A-207ENST00000542790 C11orf86A6NJI1 115 aa7.83□□□□□ -1.16
VPS33A-207ENST00000542790 NDUFC2-KCTD14E9PQ53 114 aa7.83□□□□□ -1.16
VPS33A-207ENST00000542790 IGLV5-39A0A0G2JS06 123 aa7.82□□□□□ -1.16
VPS33A-207ENST00000542790 INAFM2P0DMQ5 153 aa7.82□□□□□ -1.16
VPS33A-207ENST00000542790 FABP4P15090 132 aa7.82□□□□□ -1.16
VPS33A-207ENST00000542790 Q6ZRP5 223 aa7.82□□□□□ -1.16
VPS33A-207ENST00000542790 C7orf33Q8WU49 177 aa7.82□□□□□ -1.16
VPS33A-207ENST00000542790 CDIP1Q9H305 208 aa7.82□□□□□ -1.16
VPS33A-207ENST00000542790 FAT1Q14517 4588 aa7.81□□□□□ -1.16
VPS33A-207ENST00000542790 RPL37AP61513 92 aaKnown RBP7.81□□□□□ -1.16
VPS33A-207ENST00000542790 GAGE2EQ4V326 116 aa7.81□□□□□ -1.16
VPS33A-207ENST00000542790 C9orf116Q5BN46 136 aaPredicted RBP7.81□□□□□ -1.16
VPS33A-207ENST00000542790 GAGE2DQ9UEU5 116 aa7.81□□□□□ -1.16
VPS33A-207ENST00000542790 H0Y8G0 127 aa7.8□□□□□ -1.16
VPS33A-207ENST00000542790 ODF1Q14990 250 aa7.8□□□□□ -1.16
VPS33A-207ENST00000542790 A0A1W2PNN7 141 aa7.79□□□□□ -1.16
VPS33A-207ENST00000542790 MAP1LC3CQ9BXW4 147 aa7.79□□□□□ -1.16
VPS33A-207ENST00000542790 PCLOQ9Y6V0 5065 aa7.79□□□□□ -1.16
VPS33A-207ENST00000542790 TMEM223A0PJW6 202 aa7.78□□□□□ -1.16
VPS33A-207ENST00000542790 PLNP26678 52 aa7.78□□□□□ -1.16
VPS33A-207ENST00000542790 KRTAP10-4P60372 401 aaPredicted RBP7.78□□□□□ -1.16
VPS33A-207ENST00000542790 COA6Q5JTJ3 125 aaKnown RBP7.78□□□□□ -1.16
VPS33A-207ENST00000542790 SFTA2Q6UW10 78 aa7.78□□□□□ -1.16
VPS33A-207ENST00000542790 ABCA13Q86UQ4 5058 aa7.78□□□□□ -1.16
VPS33A-207ENST00000542790 FAM168BA1KXE4 195 aa7.75□□□□□ -1.17
VPS33A-207ENST00000542790 DPM2O94777 84 aa7.75□□□□□ -1.17
VPS33A-207ENST00000542790 C9orf129Q5T035 196 aaKnown RBP7.75□□□□□ -1.17
VPS33A-207ENST00000542790 SYS1-DBNDD2H3BUS1 97 aa7.74□□□□□ -1.17
VPS33A-207ENST00000542790 IGKCP01834 107 aa7.74□□□□□ -1.17
VPS33A-207ENST00000542790 FAM19A5Q7Z5A7 132 aaPredicted RBP7.74□□□□□ -1.17
VPS33A-207ENST00000542790 XAGE1AQ9HD64 81 aa7.74□□□□□ -1.17
VPS33A-207ENST00000542790 PFN2P35080 140 aa7.73□□□□□ -1.17
VPS33A-207ENST00000542790 COX17Q14061 63 aa7.73□□□□□ -1.17
VPS33A-207ENST00000542790 ZNF625Q96I27 306 aaPredicted RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms