RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 MSMBP08118 114 aa1.89□□□□□ -2.11
USP28-210ENST00000542033 CCL3P10147 92 aa1.89□□□□□ -2.11
USP28-210ENST00000542033 ROMO1P60602 79 aa1.89□□□□□ -2.11
USP28-210ENST00000542033 RPL39P5Q59GN2 51 aa1.89□□□□□ -2.11
USP28-210ENST00000542033 MIR7-3HGQ8N6C7 128 aa1.89□□□□□ -2.11
USP28-210ENST00000542033 ZFAND2AQ8N6M9 145 aa1.89□□□□□ -2.11
USP28-210ENST00000542033 TMEM105Q8N8V8 129 aa1.89□□□□□ -2.11
USP28-210ENST00000542033 ZCCHC13Q8WW36 166 aaKnown RBP1.89□□□□□ -2.11
USP28-210ENST00000542033 ZNF625Q96I27 306 aaPredicted RBP1.89□□□□□ -2.11
USP28-210ENST00000542033 PRR15LQ9BU68 103 aa1.89□□□□□ -2.11
USP28-210ENST00000542033 LENEPQ9Y5L5 61 aa1.89□□□□□ -2.11
USP28-210ENST00000542033 SPAG17Q6Q759 2223 aa1.89□□□□□ -2.11
USP28-210ENST00000542033 DIDO1Q9BTC0 2240 aaKnown RBP1.89□□□□□ -2.11
USP28-210ENST00000542033 NACAE9PAV3 2078 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 TRAV21A0A0B4J279 112 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 IGHV1-18A0A0C4DH31 117 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 LRCOL1A6NCL2 159 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 H3BPC8 53 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 H3BRN7 92 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 CNBPP62633 177 aaKnown RBP1.88□□□□□ -2.11
USP28-210ENST00000542033 WT1-ASQ06250 92 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 Q6ZS52 159 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 CNEP1R1Q8N9A8 125 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 LCE3DQ9BYE3 92 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 LINC01558Q9Y6Z2 57 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 DSCAMO60469 2012 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 ALPK2Q86TB3 2170 aa1.88□□□□□ -2.11
USP28-210ENST00000542033 SVILO95425 2214 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 A0A087WSZ3 146 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 IGHV3-73A0A0B4J1V6 119 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 SPTY2D1-AS1A0A0U1RR47 76 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 NDUFA1O15239 70 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 CRPP02741 224 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 CGB3P0DN86 165 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 CGB7P0DN87 165 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 KRTAP10-1P60331 282 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 LCE1CQ5T751 118 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 LCE1BQ5T7P3 118 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 INTS1Q8N201 2190 aaKnown RBP1.87□□□□□ -2.11
USP28-210ENST00000542033 ST20-AS1Q8NBB2 130 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 MUC7Q8TAX7 377 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 LINC00308Q8TCZ7 52 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 LINC00208Q96KT6 92 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 PLAC8Q9NZF1 115 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 KLK9Q9UKQ9 250 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 DSCAML1Q8TD84 2053 aa1.87□□□□□ -2.11
USP28-210ENST00000542033 COL4A5P29400 1685 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 TRBV10-1A0A0K0K1A3 114 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 B4DSR2 109 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 K7ERS5 55 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 MGPP08493 103 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 C1orf134Q5TEV5 83 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 HCP5Q6MZN7 132 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 PP632Q6XCG6 107 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 Q6ZQT0 140 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 Q8NDZ9 215 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 WFDC9Q8NEX5 89 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 PATE1Q8WXA2 126 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 HIGD2AQ9BW72 106 aa1.86□□□□□ -2.11
USP28-210ENST00000542033 PCNTO95613 3336 aa1.85□□□□□ -2.11
USP28-210ENST00000542033 IGHV3OR16-8A0A075B7F1 116 aa1.85□□□□□ -2.11
USP28-210ENST00000542033 IGKV2-40A0A087WW87 121 aaPredicted RBP1.85□□□□□ -2.11
USP28-210ENST00000542033 IGHV3-21A0A0B4J1V1 117 aa1.85□□□□□ -2.11
USP28-210ENST00000542033 I3L2K1 104 aa1.85□□□□□ -2.11
USP28-210ENST00000542033 NCR3O14931 201 aa1.85□□□□□ -2.11
USP28-210ENST00000542033 IGKV2D-40P01614 121 aaPredicted RBP1.85□□□□□ -2.11
USP28-210ENST00000542033 POLR2KP53803 58 aaKnown RBP1.85□□□□□ -2.11
USP28-210ENST00000542033 HAMPP81172 84 aa1.85□□□□□ -2.11
USP28-210ENST00000542033 KPRPQ5T749 579 aaPredicted RBP1.85□□□□□ -2.11
USP28-210ENST00000542033 COX7B2Q8TF08 81 aa1.85□□□□□ -2.11
USP28-210ENST00000542033 MED12Q93074 2177 aa1.85□□□□□ -2.11
USP28-210ENST00000542033 USF3Q68DE3 2245 aa1.85□□□□□ -2.11
USP28-210ENST00000542033 UNC13CQ8NB66 2214 aa1.85□□□□□ -2.11
USP28-210ENST00000542033 CACNA1DQ01668 2161 aa1.84□□□□□ -2.11
USP28-210ENST00000542033 IGKV2-29A2NJV5 120 aaPredicted RBP1.84□□□□□ -2.11
USP28-210ENST00000542033 IGLV7-43P04211 117 aa1.84□□□□□ -2.11
USP28-210ENST00000542033 PRB4P10163 310 aaPredicted RBP1.84□□□□□ -2.11
USP28-210ENST00000542033 SPAG11BQ08648 103 aa1.84□□□□□ -2.11
USP28-210ENST00000542033 SPAG11AQ6PDA7 123 aa1.84□□□□□ -2.11
USP28-210ENST00000542033 LEAP2Q969E1 77 aa1.84□□□□□ -2.11
USP28-210ENST00000542033 WFDC10AQ9H1F0 79 aa1.84□□□□□ -2.11
USP28-210ENST00000542033 RP1P56715 2156 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 ARFGEF3Q5TH69 2177 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 IGLV10-54A0A075B6I4 117 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 IGHV3-64A0A075B6Q5 118 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 ETDCA0A1B0GVM5 59 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 A0A1W2PNM2 257 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 LECT2O14960 151 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 IGKV1-17P01599 117 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 IGHV3-53P01767 116 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 MIR22HGQ0VDD5 57 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.83□□□□□ -2.12
USP28-210ENST00000542033 Q8NAQ8 132 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 FDCSPQ8NFU4 85 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 Q8TAT8 98 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 RPL39LQ96EH5 51 aaKnown RBP1.83□□□□□ -2.12
USP28-210ENST00000542033 KCNQ1DNQ9H478 68 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 A0A0C4DFX4 3053 aa1.83□□□□□ -2.12
USP28-210ENST00000542033 COL27A1Q8IZC6 1860 aaPredicted RBP1.82□□□□□ -2.12
USP28-210ENST00000542033 TRGV2A0A075B6R0 118 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms