RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 ZNF561-AS1K7EIQ3 104 aa11.75□□□□□ -0.53
CLIP1-215ENST00000541108 C15orf56Q8N910 161 aa11.75□□□□□ -0.53
CLIP1-215ENST00000541108 LITAFQ99732 161 aa11.75□□□□□ -0.53
CLIP1-215ENST00000541108 DNAH1Q9P2D7 4330 aa11.75□□□□□ -0.53
CLIP1-215ENST00000541108 NTN5Q8WTR8 489 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-215ENST00000541108 GVQW2A0A096LPI5 108 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-215ENST00000541108 F8WDY8 70 aa11.74□□□□□ -0.53
CLIP1-215ENST00000541108 HINT1P49773 126 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-215ENST00000541108 C2orf82Q6UX34 121 aa11.74□□□□□ -0.53
CLIP1-215ENST00000541108 VPS13DQ5THJ4 4388 aa11.73□□□□□ -0.53
CLIP1-215ENST00000541108 MEIG1Q5JSS6 88 aa11.73□□□□□ -0.53
CLIP1-215ENST00000541108 BVES-AS1Q5T3Y7 98 aa11.73□□□□□ -0.53
CLIP1-215ENST00000541108 CEND1Q8N111 149 aa11.73□□□□□ -0.53
CLIP1-215ENST00000541108 SNHG12Q9BXW3 62 aa11.73□□□□□ -0.53
CLIP1-215ENST00000541108 C2orf48Q96LS8 159 aa11.72□□□□□ -0.53
CLIP1-215ENST00000541108 SPANXDQ9BXN6 97 aa11.72□□□□□ -0.53
CLIP1-215ENST00000541108 SPANXCQ9NY87 97 aa11.72□□□□□ -0.53
CLIP1-215ENST00000541108 ADAMTSL4-AS1Q5T5F5 129 aa11.71□□□□□ -0.53
CLIP1-215ENST00000541108 LINC00476Q8WZB0 136 aa11.71□□□□□ -0.53
CLIP1-215ENST00000541108 COX17Q14061 63 aa11.71□□□□□ -0.54
CLIP1-215ENST00000541108 C6orf223Q8N319 242 aa11.71□□□□□ -0.54
CLIP1-215ENST00000541108 LY6G6CO95867 125 aa11.7□□□□□ -0.54
CLIP1-215ENST00000541108 GCSHP23434 173 aa11.7□□□□□ -0.54
CLIP1-215ENST00000541108 Q6ZR54 194 aa11.7□□□□□ -0.54
CLIP1-215ENST00000541108 ERG28Q9UKR5 140 aa11.7□□□□□ -0.54
CLIP1-215ENST00000541108 USP17L23D6RBM5 183 aa11.69□□□□□ -0.54
CLIP1-215ENST00000541108 PSCAO43653 123 aa11.69□□□□□ -0.54
CLIP1-215ENST00000541108 SMIM13P0DJ93 91 aa11.69□□□□□ -0.54
CLIP1-215ENST00000541108 IFITM1P13164 125 aa11.69□□□□□ -0.54
CLIP1-215ENST00000541108 PTTG1IPP53801 180 aa11.69□□□□□ -0.54
CLIP1-215ENST00000541108 HIGD2BQ4VC39 106 aa11.69□□□□□ -0.54
CLIP1-215ENST00000541108 LINC00526Q96FQ7 95 aa11.69□□□□□ -0.54
CLIP1-215ENST00000541108 UNQ6190/PRO20217Q6UXQ8 127 aa11.68□□□□□ -0.54
CLIP1-215ENST00000541108 BATFQ16520 125 aa11.68□□□□□ -0.54
CLIP1-215ENST00000541108 LBHQ53QV2 105 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-215ENST00000541108 COPS9Q8WXC6 57 aa11.68□□□□□ -0.54
CLIP1-215ENST00000541108 CAMK2N2Q96S95 79 aa11.68□□□□□ -0.54
CLIP1-215ENST00000541108 PPDPFQ9H3Y8 114 aa11.68□□□□□ -0.54
CLIP1-215ENST00000541108 TRBV30A0A0K0K1B3 111 aa11.67□□□□□ -0.54
CLIP1-215ENST00000541108 EREGO14944 169 aa11.67□□□□□ -0.54
CLIP1-215ENST00000541108 LINC00158P58513 81 aa11.67□□□□□ -0.54
CLIP1-215ENST00000541108 C10orf25Q5T742 122 aa11.67□□□□□ -0.54
CLIP1-215ENST00000541108 TMEM238LA0A1B0GVL6 79 aa11.66□□□□□ -0.54
CLIP1-215ENST00000541108 A6NJY4 79 aa11.66□□□□□ -0.54
CLIP1-215ENST00000541108 M0R2N4 97 aa11.66□□□□□ -0.54
CLIP1-215ENST00000541108 FXYD2P54710 66 aa11.66□□□□□ -0.54
CLIP1-215ENST00000541108 Q6ZRN7 208 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-215ENST00000541108 MUSTN1Q8IVN3 82 aa11.66□□□□□ -0.54
CLIP1-215ENST00000541108 A0A0U1RRA0 63 aa11.65□□□□□ -0.54
CLIP1-215ENST00000541108 PFN2P35080 140 aa11.65□□□□□ -0.54
CLIP1-215ENST00000541108 RPL24P83731 157 aaKnown RBP11.65□□□□□ -0.54
CLIP1-215ENST00000541108 A6NDN8 102 aa11.65□□□□□ -0.55
CLIP1-215ENST00000541108 MIR7-3HGQ8N6C7 128 aa11.65□□□□□ -0.55
CLIP1-215ENST00000541108 DAND5Q8N907 189 aa11.65□□□□□ -0.55
CLIP1-215ENST00000541108 LINC00308Q8TCZ7 52 aa11.64□□□□□ -0.55
CLIP1-215ENST00000541108 C6orf48Q9UBA6 75 aa11.64□□□□□ -0.55
CLIP1-215ENST00000541108 SYCNQ0VAF6 134 aa11.63□□□□□ -0.55
CLIP1-215ENST00000541108 C14orf177Q52M58 125 aa11.63□□□□□ -0.55
CLIP1-215ENST00000541108 Q6ZRU5 148 aa11.63□□□□□ -0.55
CLIP1-215ENST00000541108 COL5A1-AS1Q5SY13 56 aa11.62□□□□□ -0.55
CLIP1-215ENST00000541108 RNF151Q2KHN1 245 aa11.62□□□□□ -0.55
CLIP1-215ENST00000541108 C9orf116Q5BN46 136 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-215ENST00000541108 LECT2O14960 151 aa11.61□□□□□ -0.55
CLIP1-215ENST00000541108 LOC107984156A0A0G2JMH3 177 aa11.6□□□□□ -0.55
CLIP1-215ENST00000541108 A4D1N5 150 aa11.6□□□□□ -0.55
CLIP1-215ENST00000541108 LRCOL1A6NCL2 159 aa11.6□□□□□ -0.55
CLIP1-215ENST00000541108 ARL17AQ8IVW1 177 aa11.6□□□□□ -0.55
CLIP1-215ENST00000541108 A0A1B0GWB2 263 aa11.59□□□□□ -0.55
CLIP1-215ENST00000541108 SLPIP03973 132 aa11.59□□□□□ -0.55
CLIP1-215ENST00000541108 NPC2P61916 151 aa11.59□□□□□ -0.55
CLIP1-215ENST00000541108 WFDC2Q14508 124 aa11.59□□□□□ -0.55
CLIP1-215ENST00000541108 CARD19Q96LW7 228 aa11.59□□□□□ -0.55
CLIP1-215ENST00000541108 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-215ENST00000541108 EIF4EBP3O60516 100 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-215ENST00000541108 C1orf134Q5TEV5 83 aa11.59□□□□□ -0.55
CLIP1-215ENST00000541108 SOSTDC1Q6X4U4 206 aa11.59□□□□□ -0.55
CLIP1-215ENST00000541108 NHP2Q9NX24 153 aaKnown RBP11.59□□□□□ -0.55
CLIP1-215ENST00000541108 KMT2AQ03164 3969 aa11.57□□□□□ -0.56
CLIP1-215ENST00000541108 CNBPP62633 177 aaKnown RBP11.57□□□□□ -0.56
CLIP1-215ENST00000541108 NDUFC2-KCTD14E9PQ53 114 aa11.56□□□□□ -0.56
CLIP1-215ENST00000541108 TLX1NBP0CAT3 122 aa11.55□□□□□ -0.56
CLIP1-215ENST00000541108 CFC1BP0CG36 223 aa11.55□□□□□ -0.56
CLIP1-215ENST00000541108 CFC1P0CG37 223 aa11.55□□□□□ -0.56
CLIP1-215ENST00000541108 SND1-IT1Q9HBX3 110 aa11.55□□□□□ -0.56
CLIP1-215ENST00000541108 A0A0B4J2C4 111 aa11.55□□□□□ -0.56
CLIP1-215ENST00000541108 DNAH10Q8IVF4 4471 aa11.54□□□□□ -0.56
CLIP1-215ENST00000541108 ALMS1Q8TCU4 4167 aa11.54□□□□□ -0.56
CLIP1-215ENST00000541108 DNAH6Q9C0G6 4158 aa11.52□□□□□ -0.56
CLIP1-215ENST00000541108 A0A087WTM6 91 aa11.52□□□□□ -0.57
CLIP1-215ENST00000541108 PRO1854Q9UHT4 67 aa11.52□□□□□ -0.57
CLIP1-215ENST00000541108 K7ERJ3 54 aa11.51□□□□□ -0.57
CLIP1-215ENST00000541108 TAX1BP3O14907 124 aa11.51□□□□□ -0.57
CLIP1-215ENST00000541108 NDUFC2O95298 119 aa11.51□□□□□ -0.57
CLIP1-215ENST00000541108 Q8N814 137 aa11.51□□□□□ -0.57
CLIP1-215ENST00000541108 RAB37Q96AX2 223 aa11.51□□□□□ -0.57
CLIP1-215ENST00000541108 Q6ZRP5 223 aa11.5□□□□□ -0.57
CLIP1-215ENST00000541108 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-215ENST00000541108 LCE6AA0A183 80 aa11.48□□□□□ -0.57
CLIP1-215ENST00000541108 LOC107984640A0A0U1RRK4 108 aa11.47□□□□□ -0.57
CLIP1-215ENST00000541108 XAGE1AQ9HD64 81 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms