RNA–Protein interactions for RNA: ENST00000540891.1

CD9-209, Transcript of CD9 molecule, humanhuman

TSL 3

Gene CD9, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-209ENST00000540891 PACRGQ96M98 296 aaPredicted RBP10.56□□□□□ -0.72
CD9-209ENST00000540891 TOMM7Q9P0U1 55 aa10.56□□□□□ -0.72
CD9-209ENST00000540891 LRP1Q07954 4544 aaKnown RBP10.56□□□□□ -0.72
CD9-209ENST00000540891 TRBV30A0A0K0K1B3 111 aa10.55□□□□□ -0.72
CD9-209ENST00000540891 C9orf116Q5BN46 136 aaPredicted RBP10.55□□□□□ -0.72
CD9-209ENST00000540891 C7orf33Q8WU49 177 aa10.55□□□□□ -0.72
CD9-209ENST00000540891 FAT3Q8TDW7 4589 aa10.55□□□□□ -0.72
CD9-209ENST00000540891 HERC1Q15751 4861 aa10.55□□□□□ -0.72
CD9-209ENST00000540891 TRGC2P03986 189 aa10.54□□□□□ -0.72
CD9-209ENST00000540891 PRSS2P07478 247 aa10.54□□□□□ -0.72
CD9-209ENST00000540891 COLCA2A8K830 154 aa10.53□□□□□ -0.72
CD9-209ENST00000540891 IGLC3P0DOY3 106 aa10.53□□□□□ -0.72
CD9-209ENST00000540891 C6orf226Q5I0X4 101 aa10.53□□□□□ -0.72
CD9-209ENST00000540891 CHCHD1Q96BP2 118 aaKnown RBP10.53□□□□□ -0.72
CD9-209ENST00000540891 KRTAP29-1A8MX34 341 aaPredicted RBP10.52□□□□□ -0.73
CD9-209ENST00000540891 CKS1BP61024 79 aa10.52□□□□□ -0.73
CD9-209ENST00000540891 ATP5LO75964 103 aa10.51□□□□□ -0.73
CD9-209ENST00000540891 SPINK8P0C7L1 97 aa10.51□□□□□ -0.73
CD9-209ENST00000540891 NDUFA6P56556 154 aa10.51□□□□□ -0.73
CD9-209ENST00000540891 PRR3P79522 188 aaKnown RBP10.51□□□□□ -0.73
CD9-209ENST00000540891 GAGE2EQ4V326 116 aa10.51□□□□□ -0.73
CD9-209ENST00000540891 GAGE2DQ9UEU5 116 aa10.51□□□□□ -0.73
CD9-209ENST00000540891 FAM168BA1KXE4 195 aa10.5□□□□□ -0.73
CD9-209ENST00000540891 NDUFC2-KCTD14E9PQ53 114 aa10.5□□□□□ -0.73
CD9-209ENST00000540891 KRTAP7-1Q8IUC3 87 aa10.5□□□□□ -0.73
CD9-209ENST00000540891 ZNF22P17026 224 aaPredicted RBP10.49□□□□□ -0.73
CD9-209ENST00000540891 LINC00310P59036 64 aa10.49□□□□□ -0.73
CD9-209ENST00000540891 PHF5AQ7RTV0 110 aaKnown RBP10.49□□□□□ -0.73
CD9-209ENST00000540891 COX7B2Q8TF08 81 aa10.49□□□□□ -0.73
CD9-209ENST00000540891 F8VRH5 84 aa10.48□□□□□ -0.73
CD9-209ENST00000540891 CXCL5P42830 114 aa10.48□□□□□ -0.73
CD9-209ENST00000540891 C9orf129Q5T035 196 aaKnown RBP10.48□□□□□ -0.73
CD9-209ENST00000540891 BAGE3Q86Y29 109 aa10.48□□□□□ -0.73
CD9-209ENST00000540891 DMBT1Q9UGM3 2413 aaPredicted RBP10.47□□□□□ -0.73
CD9-209ENST00000540891 SCO1O75880 301 aa10.47□□□□□ -0.73
CD9-209ENST00000540891 FAM19A2Q8N3H0 131 aa10.47□□□□□ -0.73
CD9-209ENST00000540891 IGLV5-39A0A0G2JS06 123 aa10.46□□□□□ -0.73
CD9-209ENST00000540891 C11orf86A6NJI1 115 aa10.46□□□□□ -0.73
CD9-209ENST00000540891 H3BRM9 83 aa10.46□□□□□ -0.73
CD9-209ENST00000540891 J3QL48 77 aa10.45□□□□□ -0.74
CD9-209ENST00000540891 HSBP1O75506 76 aa10.45□□□□□ -0.74
CD9-209ENST00000540891 FAM19A5Q7Z5A7 132 aaPredicted RBP10.45□□□□□ -0.74
CD9-209ENST00000540891 IFI27L1Q96BM0 104 aa10.45□□□□□ -0.74
CD9-209ENST00000540891 SERF1AO75920 110 aa10.44□□□□□ -0.74
CD9-209ENST00000540891 OXTP01178 125 aa10.44□□□□□ -0.74
CD9-209ENST00000540891 KRTAP11-1Q8IUC1 163 aa10.44□□□□□ -0.74
CD9-209ENST00000540891 CHTOPQ9Y3Y2 248 aaKnown RBP10.44□□□□□ -0.74
CD9-209ENST00000540891 TRAV12-1A0A0B4J245 112 aa10.43□□□□□ -0.74
CD9-209ENST00000540891 NUPR1O60356 82 aa10.43□□□□□ -0.74
CD9-209ENST00000540891 XAGE1AQ9HD64 81 aa10.42□□□□□ -0.74
CD9-209ENST00000540891 PSORS1C2Q9UIG4 136 aa10.42□□□□□ -0.74
CD9-209ENST00000540891 SRSF9Q13242 221 aaKnown RBP eCLIP10.41□□□□□ -0.74
CD9-209ENST00000540891 TMEM170BQ5T4T1 132 aa10.41□□□□□ -0.74
CD9-209ENST00000540891 SERTAD4-AS1Q5TG53 156 aa10.41□□□□□ -0.74
CD9-209ENST00000540891 M0QXV9 152 aa10.4□□□□□ -0.74
CD9-209ENST00000540891 LEPROTL1O95214 131 aa10.38□□□□□ -0.75
CD9-209ENST00000540891 TMEM223A0PJW6 202 aa10.37□□□□□ -0.75
CD9-209ENST00000540891 MT1HL1P0DM35 61 aa10.37□□□□□ -0.75
CD9-209ENST00000540891 SPINK6Q6UWN8 80 aa10.37□□□□□ -0.75
CD9-209ENST00000540891 ODF1Q14990 250 aa10.36□□□□□ -0.75
CD9-209ENST00000540891 C1orf137Q5JT78 98 aa10.36□□□□□ -0.75
CD9-209ENST00000540891 HIST1H2BKO60814 126 aa10.35□□□□□ -0.75
CD9-209ENST00000540891 HIST1H2BJP06899 126 aa10.35□□□□□ -0.75
CD9-209ENST00000540891 HIST1H2BOP23527 126 aa10.35□□□□□ -0.75
CD9-209ENST00000540891 HIST1H2BBP33778 126 aa10.35□□□□□ -0.75
CD9-209ENST00000540891 HIST1H2BDP58876 126 aa10.35□□□□□ -0.75
CD9-209ENST00000540891 HIST1H2BCP62807 126 aa10.35□□□□□ -0.75
CD9-209ENST00000540891 HIST2H2BEQ16778 126 aa10.35□□□□□ -0.75
CD9-209ENST00000540891 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.35□□□□□ -0.75
CD9-209ENST00000540891 HIST1H2BHQ93079 126 aa10.35□□□□□ -0.75
CD9-209ENST00000540891 HIST1H2BNQ99877 126 aa10.35□□□□□ -0.75
CD9-209ENST00000540891 HIST1H2BMQ99879 126 aa10.35□□□□□ -0.75
CD9-209ENST00000540891 C22orf24Q9Y442 160 aa10.35□□□□□ -0.75
CD9-209ENST00000540891 H0Y8G0 127 aa10.34□□□□□ -0.75
CD9-209ENST00000540891 ZNF625Q96I27 306 aaPredicted RBP10.34□□□□□ -0.75
CD9-209ENST00000540891 FABP4P15090 132 aa10.33□□□□□ -0.76
CD9-209ENST00000540891 PFN2P35080 140 aa10.33□□□□□ -0.76
CD9-209ENST00000540891 UBE2BP63146 152 aa10.33□□□□□ -0.76
CD9-209ENST00000540891 ERG28Q9UKR5 140 aa10.33□□□□□ -0.76
CD9-209ENST00000540891 IGLV7-43P04211 117 aa10.32□□□□□ -0.76
CD9-209ENST00000540891 HSPB8Q9UJY1 196 aa10.32□□□□□ -0.76
CD9-209ENST00000540891 PLA2G2DQ9UNK4 145 aa10.32□□□□□ -0.76
CD9-209ENST00000540891 TP73-AS1Q9UF72 201 aa10.31□□□□□ -0.76
CD9-209ENST00000540891 TNXBP22105 4242 aa10.31□□□□□ -0.76
CD9-209ENST00000540891 LINC01600Q96MT4 127 aa10.3□□□□□ -0.76
CD9-209ENST00000540891 IGLV5-37A0A075B6J1 123 aa10.29□□□□□ -0.76
CD9-209ENST00000540891 COX17Q14061 63 aa10.29□□□□□ -0.76
CD9-209ENST00000540891 SFTA2Q6UW10 78 aa10.29□□□□□ -0.76
CD9-209ENST00000540891 MRPL55Q7Z7F7 128 aaKnown RBP10.29□□□□□ -0.76
CD9-209ENST00000540891 SND1-IT1Q9HBX3 110 aa10.29□□□□□ -0.76
CD9-209ENST00000540891 LBHQ53QV2 105 aaPredicted RBP10.28□□□□□ -0.76
CD9-209ENST00000540891 PMCHL2Q9BQD1 86 aa10.28□□□□□ -0.76
CD9-209ENST00000540891 REG3GQ6UW15 175 aa10.27□□□□□ -0.77
CD9-209ENST00000540891 LINC00167Q96N53 147 aa10.27□□□□□ -0.77
CD9-209ENST00000540891 PLNP26678 52 aa10.26□□□□□ -0.77
CD9-209ENST00000540891 Q8NDZ9 215 aa10.26□□□□□ -0.77
CD9-209ENST00000540891 DPM2O94777 84 aa10.25□□□□□ -0.77
CD9-209ENST00000540891 VPREB1P12018 145 aa10.25□□□□□ -0.77
CD9-209ENST00000540891 TSPEAR-AS2P59090 65 aa10.25□□□□□ -0.77
CD9-209ENST00000540891 MAP1LC3CQ9BXW4 147 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms